Wall clock time and date at job start Mon Mar 30 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 110.28967 * 2 1 4 4 C 1.54378 * 110.32259 * 122.12914 * 2 1 3 5 5 N 1.48564 * 104.59700 * 142.74637 * 4 2 1 6 6 C 1.46894 * 111.00014 * 200.95966 * 5 4 2 7 7 C 1.53003 * 109.46999 * 170.00041 * 6 5 4 8 8 O 1.42899 * 109.46702 * 65.00138 * 7 6 5 9 9 C 1.42902 * 113.99768 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47345 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00088 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00393 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00123 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47056 * 89.99558 * 14 12 10 16 16 H 1.48500 * 109.47520 * 209.99874 * 14 12 10 17 17 H 1.48506 * 109.47067 * 330.00183 * 14 12 10 18 18 C 1.48563 * 104.22158 * 320.51823 * 5 4 2 19 19 C 1.54265 * 110.32379 * 237.76214 * 2 1 3 20 20 H 1.09005 * 110.32021 * 122.10581 * 19 2 1 21 21 C 1.50697 * 110.32443 * 0.02562 * 19 2 1 22 22 O 1.20826 * 119.99719 * 272.34564 * 21 19 2 23 23 O 1.34230 * 120.00215 * 92.34561 * 21 19 2 24 24 H 1.08995 * 109.46890 * 303.07152 * 1 2 3 25 25 H 1.09001 * 109.46603 * 63.06990 * 1 2 3 26 26 H 1.08998 * 109.47035 * 183.06514 * 1 2 3 27 27 H 1.09004 * 109.47230 * 180.66934 * 3 2 1 28 28 H 1.09001 * 109.47630 * 300.67477 * 3 2 1 29 29 H 1.09007 * 109.46769 * 60.67262 * 3 2 1 30 30 H 1.09005 * 110.41487 * 23.97059 * 4 2 1 31 31 H 1.08995 * 110.51472 * 261.57897 * 4 2 1 32 32 H 1.09003 * 109.47173 * 290.00006 * 6 5 4 33 33 H 1.08996 * 109.47558 * 50.00225 * 6 5 4 34 34 H 1.08999 * 109.47306 * 184.99930 * 7 6 5 35 35 H 1.08992 * 109.47273 * 304.99900 * 7 6 5 36 36 H 1.09004 * 109.47233 * 300.00114 * 9 8 7 37 37 H 1.09006 * 109.47582 * 59.99678 * 9 8 7 38 38 H 0.96997 * 120.00717 * 180.02562 * 13 12 10 39 39 H 1.08992 * 110.40972 * 158.25774 * 18 5 4 40 40 H 1.08996 * 110.41137 * 280.70501 * 18 5 4 41 41 H 0.96706 * 116.99974 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0662 -0.7699 1.2260 5 7 3.2693 -1.4823 0.7239 6 6 3.6067 -2.6203 1.5893 7 6 4.6849 -3.4714 0.9154 8 8 5.8900 -2.7118 0.8028 9 6 6.9665 -3.4181 0.1830 10 6 8.1799 -2.5269 0.1163 11 1 8.1335 -1.5214 0.5077 12 6 9.3489 -2.9947 -0.4453 13 7 9.4054 -4.2189 -0.9224 14 14 10.8527 -1.8896 -0.5286 15 1 11.6652 -2.0658 0.7019 16 1 11.6679 -2.2515 -1.7160 17 1 10.4206 -0.4731 -0.6378 18 6 2.8807 -1.9429 -0.6340 19 6 2.0658 -0.7717 -1.2236 20 1 2.7068 -0.1280 -1.8261 21 6 0.9225 -1.2948 -2.0543 22 8 0.4358 -2.3716 -1.8022 23 8 0.4447 -0.5645 -3.0742 24 1 -0.3633 0.5608 0.8611 25 1 -0.3632 0.4655 -0.9163 26 1 -0.3633 -1.0262 0.0549 27 1 3.1504 1.4195 -0.0120 28 1 1.6949 1.9577 -0.8838 29 1 1.7144 1.9503 0.8960 30 1 1.3229 -1.4834 1.5818 31 1 2.3390 -0.0776 2.0224 32 1 3.9793 -2.2520 2.5452 33 1 2.7165 -3.2268 1.7557 34 1 4.8718 -4.3624 1.5147 35 1 4.3470 -3.7661 -0.0780 36 1 7.2008 -4.3084 0.7668 37 1 6.6757 -3.7114 -0.8258 38 1 10.2279 -4.5482 -1.3171 39 1 3.7670 -2.1320 -1.2394 40 1 2.2648 -2.8398 -0.5694 41 1 -0.2892 -0.9419 -3.5784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709776508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:23 Heat of formation + Delta-G solvation = -166.469746 kcal Electronic energy + Delta-G solvation = -21696.929872 eV Core-core repulsion = 18382.551471 eV Total energy + Delta-G solvation = -3314.378401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06251 -39.97709 -38.47391 -37.11965 -35.68737 -34.75642 -31.74317 -30.56398 -28.84213 -28.29756 -26.26695 -25.19171 -24.43867 -22.64874 -21.67715 -19.97900 -19.13107 -18.58622 -17.81270 -17.58999 -17.15575 -16.76125 -16.39723 -15.97459 -15.77267 -15.44697 -14.87225 -14.48749 -14.35559 -14.25397 -13.97496 -13.56768 -13.39955 -13.23594 -13.00478 -12.83332 -12.71639 -12.67860 -12.44723 -12.33149 -12.19995 -12.06936 -11.85193 -11.74058 -11.48545 -11.43133 -11.25505 -10.85071 -10.20169 -9.42927 -8.30677 -6.42831 1.10281 1.40970 1.44029 1.56317 1.97917 2.36247 3.01090 3.03196 3.19346 3.30446 3.42548 3.82785 4.06753 4.10670 4.17086 4.21229 4.26302 4.41559 4.46842 4.56953 4.64964 4.67935 4.70233 4.76855 4.82139 4.86691 4.97964 5.00342 5.03398 5.14426 5.18105 5.22782 5.45276 5.54327 5.56723 5.79755 5.96408 6.00664 6.56281 6.85011 6.95012 7.29330 8.81856 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.003998 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.602304 B = 7001.424144 C = 7064.246934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.046 4.046 3 C -0.131 4.131 4 C 0.039 3.961 5 N -0.510 5.510 6 C 0.059 3.941 7 C 0.054 3.946 8 O -0.392 6.392 9 C 0.209 3.791 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.006 3.994 13 N -0.933 5.933 14 Si 0.983 3.017 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.044 3.956 19 C -0.085 4.085 20 H 0.118 0.882 21 C 0.503 3.497 22 O -0.546 6.546 23 O -0.506 6.506 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.034 0.966 36 H -0.017 1.017 37 H -0.019 1.019 38 H 0.270 0.730 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.494 9.926 0.349 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.189 4.189 4 C -0.089 4.089 5 N -0.234 5.234 6 C -0.069 4.069 7 C -0.023 4.023 8 O -0.311 6.311 9 C 0.134 3.866 10 C -0.582 4.582 11 H 0.080 0.920 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.806 3.194 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.188 1.188 18 C -0.084 4.084 19 C -0.105 4.105 20 H 0.136 0.864 21 C 0.347 3.653 22 O -0.436 6.436 23 O -0.320 6.320 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.001 0.999 37 H -0.001 1.001 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -19.701 10.202 0.615 22.194 hybrid contribution -0.263 -1.408 -0.689 1.590 sum -19.964 8.793 -0.074 21.814 Atomic orbital electron populations 1.22095 0.92684 1.02017 1.03954 1.21231 0.96113 0.96396 0.90914 1.21837 1.01194 0.92590 1.03233 1.23414 0.90430 0.97590 0.97444 1.65416 1.33396 1.23200 1.01404 1.22265 0.96052 0.91553 0.97054 1.22610 0.86440 0.94414 0.98877 1.87907 1.20568 1.41344 1.81305 1.19804 0.84924 0.91812 0.90110 1.21372 0.96087 1.00456 1.40263 0.91979 1.25965 1.02232 0.96973 0.94037 1.70074 1.29050 1.17754 1.40350 0.85181 0.77370 0.78642 0.78205 1.19238 1.19968 1.18776 1.22984 0.97747 0.95756 0.91887 1.21955 0.93431 0.98642 0.96471 0.86409 1.23087 0.82702 0.81565 0.77975 1.90697 1.59794 1.23733 1.69414 1.84526 1.52943 1.51621 1.42899 0.89569 0.91217 0.93455 0.92777 0.91255 0.90488 0.93017 0.88334 0.89187 0.91365 0.93352 0.94751 0.99900 1.00146 0.92099 0.91446 0.92762 0.71081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 7.28 71.98 0.52 -1.89 16 2 C -0.05 -0.89 1.03 -51.29 -0.05 -0.95 16 3 C -0.13 -2.23 8.24 71.98 0.59 -1.63 16 4 C 0.04 0.86 5.58 86.45 0.48 1.34 16 5 N -0.51 -15.35 5.44 -881.51 -4.79 -20.14 16 6 C 0.06 1.79 5.44 86.31 0.47 2.26 16 7 C 0.05 2.10 5.81 71.98 0.42 2.52 16 8 O -0.39 -19.80 10.27 -148.98 -1.53 -21.33 16 9 C 0.21 12.11 5.69 71.24 0.41 12.52 16 10 C -0.54 -33.17 9.43 25.60 0.24 -32.93 16 11 H 0.06 3.75 7.81 -2.91 -0.02 3.73 16 12 C 0.01 0.36 5.46 84.65 0.46 0.82 16 13 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 14 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.04 1.34 4.59 86.45 0.40 1.74 16 19 C -0.09 -2.02 3.21 -10.64 -0.03 -2.06 16 20 H 0.12 2.71 7.71 -2.38 -0.02 2.70 16 21 C 0.50 11.40 5.25 71.23 0.37 11.78 16 22 O -0.55 -15.47 15.75 21.96 0.35 -15.13 16 23 O -0.51 -8.10 13.03 -51.42 -0.67 -8.77 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.02 7.19 -2.39 -0.02 1.01 16 26 H 0.05 0.92 7.03 -2.39 -0.02 0.90 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 1.09 7.49 -2.38 -0.02 1.07 16 31 H 0.10 1.98 7.86 -2.39 -0.02 1.96 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 1.74 7.88 -2.39 -0.02 1.72 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 1.35 6.56 -2.39 -0.02 1.33 16 36 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 37 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.07 2.38 7.56 -2.39 -0.02 2.36 16 40 H 0.05 1.69 6.73 -2.39 -0.02 1.68 16 41 H 0.43 3.07 9.10 -74.05 -0.67 2.40 16 Total: -1.00 -73.38 332.04 0.29 -73.09 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.34 Total: 8.53 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.28 Total: -6.48 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -4.51 Total: -76.96 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.85 Total: -45.23 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.38 0.29 -73.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709776508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.378 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds