Wall clock time and date at job start Mon Mar 30 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.36991 * 2 1 4 4 C 1.54385 * 110.32282 * 122.17913 * 2 1 3 5 5 N 1.48559 * 104.59475 * 95.04414 * 4 2 1 6 6 C 1.46905 * 111.00078 * 159.04329 * 5 4 2 7 7 C 1.52995 * 109.47028 * 169.99943 * 6 5 4 8 8 O 1.42902 * 109.47416 * 65.00160 * 7 6 5 9 9 C 1.42893 * 114.00121 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47115 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99957 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99925 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00301 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99592 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47258 * 269.99654 * 14 12 10 16 16 H 1.48496 * 109.47200 * 30.00336 * 14 12 10 17 17 H 1.48500 * 109.46944 * 150.00075 * 14 12 10 18 18 C 1.48558 * 104.22300 * 39.48597 * 5 4 2 19 19 C 1.54262 * 110.32757 * 237.81323 * 2 1 3 20 20 H 1.08993 * 110.32055 * 0.10591 * 19 2 1 21 21 C 1.50699 * 110.31980 * 122.20875 * 19 2 1 22 22 O 1.20823 * 119.99704 * 87.26215 * 21 19 2 23 23 O 1.34224 * 119.99905 * 267.25382 * 21 19 2 24 24 H 1.08992 * 109.47497 * 299.27528 * 1 2 3 25 25 H 1.09000 * 109.47257 * 59.27934 * 1 2 3 26 26 H 1.09007 * 109.47077 * 179.27336 * 1 2 3 27 27 H 1.09004 * 109.47183 * 179.58332 * 3 2 1 28 28 H 1.08998 * 109.46994 * 299.58153 * 3 2 1 29 29 H 1.08998 * 109.47052 * 59.58348 * 3 2 1 30 30 H 1.09003 * 110.41023 * 336.26842 * 4 2 1 31 31 H 1.08999 * 110.51447 * 213.87713 * 4 2 1 32 32 H 1.09000 * 109.46963 * 50.00044 * 6 5 4 33 33 H 1.09001 * 109.46996 * 290.00417 * 6 5 4 34 34 H 1.08999 * 109.47328 * 304.99541 * 7 6 5 35 35 H 1.09008 * 109.46636 * 184.99871 * 7 6 5 36 36 H 1.09001 * 109.47045 * 60.00356 * 9 8 7 37 37 H 1.09001 * 109.47627 * 299.99738 * 9 8 7 38 38 H 0.97005 * 119.99994 * 359.97438 * 13 12 10 39 39 H 1.08998 * 110.40952 * 79.29507 * 18 5 4 40 40 H 1.09004 * 110.41150 * 201.74044 * 18 5 4 41 41 H 0.96705 * 116.99732 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7710 1.2254 5 7 2.3147 -2.1467 0.7226 6 6 3.2648 -2.8595 1.5871 7 6 3.3063 -4.3365 1.1903 8 8 3.8328 -4.4598 -0.1325 9 6 3.9149 -5.8069 -0.6021 10 6 4.4798 -5.8183 -1.9992 11 1 4.7488 -4.8896 -2.4805 12 6 4.6523 -7.0142 -2.6633 13 7 4.3233 -8.1449 -2.0779 14 14 5.3519 -7.0281 -4.3953 15 1 4.2431 -6.9277 -5.3780 16 1 6.2715 -5.8749 -4.5670 17 1 6.0974 -8.2930 -4.6179 18 6 2.8807 -1.9422 -0.6356 19 6 2.0658 -0.7705 -1.2242 20 1 1.2389 -1.1471 -1.8261 21 6 2.9540 0.1194 -2.0550 22 8 4.1316 0.2059 -1.7992 23 8 2.4367 0.8158 -3.0793 24 1 -0.3634 0.5025 0.8963 25 1 -0.3634 0.5250 -0.8834 26 1 -0.3633 -1.0276 -0.0130 27 1 3.1524 1.4172 0.0075 28 1 1.7134 1.9515 -0.8937 29 1 1.7012 1.9560 0.8862 30 1 1.3212 -0.7859 2.0209 31 1 2.9936 -0.3234 1.5824 32 1 2.9475 -2.7712 2.6261 33 1 4.2576 -2.4243 1.4722 34 1 2.2978 -4.7491 1.2199 35 1 3.9428 -4.8821 1.8870 36 1 2.9192 -6.2504 -0.6097 37 1 4.5642 -6.3827 0.0574 38 1 3.9597 -8.1376 -1.1786 39 1 3.9360 -1.6772 -0.5717 40 1 2.7490 -2.8389 -1.2413 41 1 3.0457 1.3728 -3.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709776509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:27 Heat of formation + Delta-G solvation = -147.283437 kcal Electronic energy + Delta-G solvation = -22012.474235 eV Core-core repulsion = 18698.927815 eV Total energy + Delta-G solvation = -3313.546420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97704 -38.84017 -36.89492 -36.08296 -34.40691 -32.87256 -30.65632 -29.00791 -27.57232 -26.36788 -25.27793 -23.67875 -22.47374 -21.33518 -20.68946 -19.07590 -18.08038 -16.94569 -16.67495 -16.28335 -15.67579 -15.53696 -14.70840 -14.50508 -14.19215 -13.74161 -13.56474 -13.38084 -13.27833 -13.19620 -12.64609 -12.34920 -12.20755 -11.90970 -11.72197 -11.55135 -11.42653 -11.17912 -11.12847 -10.95914 -10.74082 -10.70727 -10.60106 -10.38103 -10.13477 -10.08300 -8.81832 -8.61179 -8.33711 -8.20885 -6.44792 -4.13247 2.19500 2.96749 3.43201 3.47578 3.63986 4.16065 4.28640 4.42743 4.45524 4.70296 4.83750 5.04756 5.13946 5.24435 5.33213 5.33937 5.42662 5.48913 5.52546 5.54290 5.63103 5.73396 5.84893 5.90805 5.93186 5.94862 6.03211 6.13526 6.19326 6.27619 6.45400 6.52273 6.79769 6.95397 7.13361 7.18254 7.88875 7.91240 8.20172 8.65832 8.82906 9.57314 10.95544 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.005129 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.537068 B = 5457.381691 C = 6437.222771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C -0.157 4.157 4 C 0.037 3.963 5 N -0.501 5.501 6 C 0.050 3.950 7 C 0.064 3.936 8 O -0.385 6.385 9 C 0.187 3.813 10 C -0.594 4.594 11 H 0.059 0.941 12 C 0.017 3.983 13 N -0.912 5.912 14 Si 1.079 2.921 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.283 1.283 18 C 0.053 3.947 19 C -0.086 4.086 20 H 0.112 0.888 21 C 0.493 3.507 22 O -0.512 6.512 23 O -0.517 6.517 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.040 0.960 36 H -0.005 1.005 37 H -0.007 1.007 38 H 0.267 0.733 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 18.737 5.062 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 C -0.215 4.215 4 C -0.091 4.091 5 N -0.225 5.225 6 C -0.078 4.078 7 C -0.014 4.014 8 O -0.304 6.304 9 C 0.112 3.888 10 C -0.632 4.632 11 H 0.078 0.922 12 C -0.186 4.186 13 N -0.548 5.548 14 Si 0.907 3.093 15 H -0.212 1.212 16 H -0.213 1.213 17 H -0.208 1.208 18 C -0.074 4.074 19 C -0.106 4.106 20 H 0.130 0.870 21 C 0.335 3.665 22 O -0.399 6.399 23 O -0.329 6.329 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -7.300 17.324 4.003 19.220 hybrid contribution 0.678 1.566 1.218 2.097 sum -6.621 18.890 5.222 20.686 Atomic orbital electron populations 1.21850 0.92569 1.02937 1.01759 1.21192 0.96764 0.94433 0.92803 1.22151 1.01609 0.95143 1.02582 1.23275 0.99959 0.89308 0.96530 1.65427 1.41172 1.13570 1.02294 1.22302 0.94621 0.94557 0.96353 1.22283 0.97738 0.94386 0.86981 1.87882 1.84292 1.30220 1.28009 1.20254 0.94627 0.78734 0.95149 1.21912 1.46118 0.95973 0.99237 0.92245 1.25894 0.95634 0.91549 1.05504 1.70767 1.40456 1.27775 1.15815 0.83402 0.76450 0.75662 0.73832 1.21241 1.21280 1.20848 1.23227 0.96920 0.96718 0.90584 1.22058 0.98496 0.94765 0.95298 0.87006 1.23257 0.87535 0.77793 0.77920 1.90717 1.17999 1.62776 1.68419 1.84568 1.47087 1.57685 1.43566 0.92314 0.92363 0.91224 0.91900 0.91931 0.91635 0.89779 0.93606 0.90041 0.93712 0.93521 0.94183 0.98687 0.98939 0.92266 0.91583 0.87050 0.73561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.23 37.15 0.31 -0.94 16 2 C -0.05 -0.57 1.03 -153.13 -0.16 -0.73 16 3 C -0.16 -1.58 7.27 37.16 0.27 -1.31 16 4 C 0.04 0.45 5.55 -2.18 -0.01 0.44 16 5 N -0.50 -7.58 5.34 -229.97 -1.23 -8.81 16 6 C 0.05 0.77 5.39 -3.82 -0.02 0.75 16 7 C 0.06 1.20 6.26 37.15 0.23 1.43 16 8 O -0.38 -9.19 7.81 -35.23 -0.28 -9.46 16 9 C 0.19 5.12 5.00 36.01 0.18 5.30 16 10 C -0.59 -17.75 9.43 -34.44 -0.32 -18.07 16 11 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 12 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 13 N -0.91 -28.18 13.65 55.43 0.76 -27.42 16 14 Si 1.08 25.86 29.90 -169.99 -5.08 20.78 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.05 0.90 4.84 -2.18 -0.01 0.89 16 19 C -0.09 -1.17 3.21 -90.39 -0.29 -1.46 16 20 H 0.11 1.43 7.71 -51.93 -0.40 1.03 16 21 C 0.49 6.83 5.27 36.01 0.19 7.02 16 22 O -0.51 -8.66 15.67 -18.75 -0.29 -8.96 16 23 O -0.52 -5.53 13.11 -39.24 -0.51 -6.05 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.74 6.89 -51.93 -0.36 0.39 16 28 H 0.06 0.60 7.39 -51.93 -0.38 0.21 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 31 H 0.05 0.56 7.71 -51.93 -0.40 0.16 16 32 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.04 0.72 7.77 -51.93 -0.40 0.32 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.00 -0.13 8.01 -51.93 -0.42 -0.54 16 37 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 38 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 39 H 0.07 1.27 6.48 -51.93 -0.34 0.93 16 40 H 0.11 2.25 6.83 -51.93 -0.35 1.89 16 41 H 0.41 2.64 9.10 45.56 0.41 3.06 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -34.07 329.47 -7.33 -41.40 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.92 Total: -0.16 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 0.27 Total: -6.29 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.47 Total: -36.23 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -1.08 Total: -24.47 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.07 -7.33 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709776509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.884 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds