Wall clock time and date at job start Mon Mar 30 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.36991 * 2 1 4 4 C 1.54385 * 110.32282 * 122.17913 * 2 1 3 5 5 N 1.48559 * 104.59475 * 95.04414 * 4 2 1 6 6 C 1.46905 * 111.00078 * 159.04329 * 5 4 2 7 7 C 1.52995 * 109.47028 * 169.99943 * 6 5 4 8 8 O 1.42902 * 109.47416 * 65.00160 * 7 6 5 9 9 C 1.42893 * 114.00121 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47115 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99957 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99925 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00301 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99592 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47258 * 269.99654 * 14 12 10 16 16 H 1.48496 * 109.47200 * 30.00336 * 14 12 10 17 17 H 1.48500 * 109.46944 * 150.00075 * 14 12 10 18 18 C 1.48558 * 104.22300 * 39.48597 * 5 4 2 19 19 C 1.54262 * 110.32757 * 237.81323 * 2 1 3 20 20 H 1.08993 * 110.32055 * 0.10591 * 19 2 1 21 21 C 1.50699 * 110.31980 * 122.20875 * 19 2 1 22 22 O 1.20823 * 119.99704 * 87.26215 * 21 19 2 23 23 O 1.34224 * 119.99905 * 267.25382 * 21 19 2 24 24 H 1.08992 * 109.47497 * 299.27528 * 1 2 3 25 25 H 1.09000 * 109.47257 * 59.27934 * 1 2 3 26 26 H 1.09007 * 109.47077 * 179.27336 * 1 2 3 27 27 H 1.09004 * 109.47183 * 179.58332 * 3 2 1 28 28 H 1.08998 * 109.46994 * 299.58153 * 3 2 1 29 29 H 1.08998 * 109.47052 * 59.58348 * 3 2 1 30 30 H 1.09003 * 110.41023 * 336.26842 * 4 2 1 31 31 H 1.08999 * 110.51447 * 213.87713 * 4 2 1 32 32 H 1.09000 * 109.46963 * 50.00044 * 6 5 4 33 33 H 1.09001 * 109.46996 * 290.00417 * 6 5 4 34 34 H 1.08999 * 109.47328 * 304.99541 * 7 6 5 35 35 H 1.09008 * 109.46636 * 184.99871 * 7 6 5 36 36 H 1.09001 * 109.47045 * 60.00356 * 9 8 7 37 37 H 1.09001 * 109.47627 * 299.99738 * 9 8 7 38 38 H 0.97005 * 119.99994 * 359.97438 * 13 12 10 39 39 H 1.08998 * 110.40952 * 79.29507 * 18 5 4 40 40 H 1.09004 * 110.41150 * 201.74044 * 18 5 4 41 41 H 0.96705 * 116.99732 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7710 1.2254 5 7 2.3147 -2.1467 0.7226 6 6 3.2648 -2.8595 1.5871 7 6 3.3063 -4.3365 1.1903 8 8 3.8328 -4.4598 -0.1325 9 6 3.9149 -5.8069 -0.6021 10 6 4.4798 -5.8183 -1.9992 11 1 4.7488 -4.8896 -2.4805 12 6 4.6523 -7.0142 -2.6633 13 7 4.3233 -8.1449 -2.0779 14 14 5.3519 -7.0281 -4.3953 15 1 4.2431 -6.9277 -5.3780 16 1 6.2715 -5.8749 -4.5670 17 1 6.0974 -8.2930 -4.6179 18 6 2.8807 -1.9422 -0.6356 19 6 2.0658 -0.7705 -1.2242 20 1 1.2389 -1.1471 -1.8261 21 6 2.9540 0.1194 -2.0550 22 8 4.1316 0.2059 -1.7992 23 8 2.4367 0.8158 -3.0793 24 1 -0.3634 0.5025 0.8963 25 1 -0.3634 0.5250 -0.8834 26 1 -0.3633 -1.0276 -0.0130 27 1 3.1524 1.4172 0.0075 28 1 1.7134 1.9515 -0.8937 29 1 1.7012 1.9560 0.8862 30 1 1.3212 -0.7859 2.0209 31 1 2.9936 -0.3234 1.5824 32 1 2.9475 -2.7712 2.6261 33 1 4.2576 -2.4243 1.4722 34 1 2.2978 -4.7491 1.2199 35 1 3.9428 -4.8821 1.8870 36 1 2.9192 -6.2504 -0.6097 37 1 4.5642 -6.3827 0.0574 38 1 3.9597 -8.1376 -1.1786 39 1 3.9360 -1.6772 -0.5717 40 1 2.7490 -2.8389 -1.2413 41 1 3.0457 1.3728 -3.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709776509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:26 Heat of formation + Delta-G solvation = -172.622988 kcal Electronic energy + Delta-G solvation = -22013.573041 eV Core-core repulsion = 18698.927815 eV Total energy + Delta-G solvation = -3314.645226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05935 -39.98178 -38.63984 -37.13653 -35.77700 -34.94942 -31.83374 -30.43402 -28.48954 -28.28098 -26.34721 -25.05635 -24.62091 -22.56323 -21.87971 -20.06955 -19.16853 -19.14115 -17.88117 -17.52595 -17.36268 -16.79475 -15.99948 -15.83461 -15.63927 -15.51252 -14.92798 -14.73930 -14.36885 -14.32346 -14.04089 -13.76244 -13.57104 -13.12683 -13.07270 -12.79316 -12.74010 -12.58435 -12.50864 -12.27662 -12.11846 -11.95870 -11.87444 -11.73244 -11.53265 -11.44522 -10.86111 -10.83968 -10.32678 -9.57008 -8.84487 -6.54944 1.10093 1.49384 1.59025 1.78944 1.97590 2.46834 3.00476 3.02284 3.06992 3.31977 3.38421 3.80820 4.02653 4.11406 4.21456 4.24923 4.26786 4.40800 4.44377 4.50608 4.59186 4.62101 4.65869 4.72178 4.80130 4.86603 4.92588 4.98789 5.02789 5.03471 5.14417 5.22018 5.43550 5.53352 5.66469 5.73818 5.91051 5.95648 6.32711 6.66661 6.93421 7.25384 8.56737 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.005129 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.537068 B = 5457.381691 C = 6437.222771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.046 4.046 3 C -0.152 4.152 4 C 0.038 3.962 5 N -0.507 5.507 6 C 0.057 3.943 7 C 0.055 3.945 8 O -0.396 6.396 9 C 0.199 3.801 10 C -0.619 4.619 11 H 0.048 0.952 12 C -0.027 4.027 13 N -0.928 5.928 14 Si 1.127 2.873 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.059 3.941 19 C -0.087 4.087 20 H 0.119 0.881 21 C 0.499 3.501 22 O -0.549 6.549 23 O -0.506 6.506 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.044 0.956 32 H 0.122 0.878 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.050 0.950 36 H -0.018 1.018 37 H -0.020 1.020 38 H 0.256 0.744 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 20.553 5.129 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.047 4.047 3 C -0.209 4.209 4 C -0.090 4.090 5 N -0.231 5.231 6 C -0.071 4.071 7 C -0.023 4.023 8 O -0.316 6.316 9 C 0.123 3.877 10 C -0.657 4.657 11 H 0.066 0.934 12 C -0.225 4.225 13 N -0.564 5.564 14 Si 0.946 3.054 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.070 4.070 19 C -0.107 4.107 20 H 0.137 0.863 21 C 0.342 3.658 22 O -0.440 6.440 23 O -0.319 6.319 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.000 1.000 37 H -0.003 1.003 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -8.507 19.174 4.086 21.371 hybrid contribution 1.003 1.052 1.259 1.923 sum -7.505 20.226 5.345 22.226 Atomic orbital electron populations 1.21823 0.90646 1.02741 1.03361 1.21259 0.98118 0.94548 0.90740 1.22100 1.00146 0.94524 1.04124 1.23420 1.00723 0.87250 0.97569 1.65389 1.40400 1.15803 1.01474 1.22309 0.94541 0.91967 0.98316 1.22631 0.97653 0.97319 0.84650 1.87879 1.84804 1.27920 1.31001 1.19902 0.93231 0.80283 0.94257 1.22230 1.46886 0.95926 1.00646 0.93369 1.27520 0.94869 0.90836 1.09229 1.70891 1.41482 1.28480 1.15554 0.82833 0.76739 0.76461 0.69376 1.19089 1.19946 1.19832 1.22902 0.96014 0.96336 0.91701 1.22061 0.97933 0.94108 0.96622 0.86317 1.23243 0.86841 0.77553 0.78117 1.90709 1.19501 1.64138 1.69608 1.84512 1.47318 1.57451 1.42638 0.90099 0.91445 0.92283 0.94087 0.91214 0.89248 0.87097 0.93719 0.86008 0.94836 0.93355 0.93206 1.00047 1.00278 0.93461 0.94557 0.91190 0.71235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.23 71.98 0.59 -1.39 16 2 C -0.05 -0.92 1.03 -51.29 -0.05 -0.98 16 3 C -0.15 -2.67 7.27 71.98 0.52 -2.15 16 4 C 0.04 0.82 5.55 86.45 0.48 1.30 16 5 N -0.51 -15.07 5.34 -881.48 -4.70 -19.77 16 6 C 0.06 1.71 5.39 86.30 0.47 2.17 16 7 C 0.05 2.07 6.26 71.98 0.45 2.52 16 8 O -0.40 -19.75 7.81 -148.98 -1.16 -20.92 16 9 C 0.20 11.32 5.00 71.24 0.36 11.68 16 10 C -0.62 -38.12 9.43 25.60 0.24 -37.88 16 11 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 12 C -0.03 -1.60 5.46 84.66 0.46 -1.14 16 13 N -0.93 -58.13 13.65 21.45 0.29 -57.84 16 14 Si 1.13 51.74 29.90 68.60 2.05 53.79 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 C 0.06 2.07 4.84 86.45 0.42 2.49 16 19 C -0.09 -2.34 3.21 -10.64 -0.03 -2.38 16 20 H 0.12 2.99 7.71 -2.39 -0.02 2.97 16 21 C 0.50 13.67 5.27 71.24 0.38 14.04 16 22 O -0.55 -18.97 15.67 21.97 0.34 -18.62 16 23 O -0.51 -10.01 13.11 -51.36 -0.67 -10.68 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.04 0.92 6.89 -2.39 -0.02 0.90 16 28 H 0.07 1.13 7.39 -2.39 -0.02 1.11 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.87 7.86 -2.39 -0.02 1.85 16 31 H 0.04 1.00 7.71 -2.39 -0.02 0.99 16 32 H 0.12 2.69 8.08 -2.39 -0.02 2.67 16 33 H 0.03 1.09 7.77 -2.39 -0.02 1.07 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 37 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 38 H 0.26 16.20 7.22 -92.70 -0.67 15.53 16 39 H 0.04 1.48 6.48 -2.39 -0.02 1.46 16 40 H 0.07 3.01 6.83 -2.38 -0.02 3.00 16 41 H 0.43 4.78 9.10 -74.05 -0.67 4.10 16 Total: -1.00 -75.99 329.47 0.86 -75.12 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.44 Total: 10.64 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.28 Total: -11.72 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -4.41 Total: -77.61 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -1.49 Total: -50.22 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -75.99 0.86 -75.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709776509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.502 kcal (2) G-P(sol) polarization free energy of solvation -75.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds