Wall clock time and date at job start Mon Mar 30 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99634 * 2 1 4 4 H 1.48501 * 109.47003 * 269.99896 * 3 2 1 5 5 H 1.48495 * 109.47079 * 30.00200 * 3 2 1 6 6 H 1.48501 * 109.46818 * 150.00380 * 3 2 1 7 7 C 1.37875 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99731 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00252 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47388 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46994 * 65.00397 * 12 11 10 14 14 C 1.46894 * 111.00270 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47104 * 34.99612 * 14 13 12 16 16 C 1.52997 * 109.47515 * 154.99879 * 14 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 14 19 19 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 20 20 C 1.50693 * 109.47531 * 180.02562 * 18 17 16 21 21 O 1.20828 * 119.99953 * 0.02562 * 20 18 17 22 22 O 1.34226 * 120.00533 * 179.97438 * 20 18 17 23 23 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 24 24 C 1.52999 * 109.46927 * 275.00239 * 14 13 12 25 25 H 0.97001 * 120.00136 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47265 * 59.99881 * 9 7 2 27 27 H 1.08995 * 109.47273 * 299.99811 * 9 7 2 28 28 H 1.09001 * 109.46868 * 60.00429 * 11 10 9 29 29 H 1.09001 * 109.47385 * 300.00659 * 11 10 9 30 30 H 1.09000 * 109.47032 * 305.00654 * 12 11 10 31 31 H 1.08998 * 109.47074 * 185.00185 * 12 11 10 32 32 H 1.00901 * 111.00119 * 56.04572 * 13 12 11 33 33 H 1.09002 * 109.47153 * 59.99762 * 16 14 13 34 34 H 1.09001 * 109.46832 * 299.99953 * 16 14 13 35 35 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 36 36 H 1.09004 * 109.46724 * 180.02562 * 17 16 14 37 37 H 0.96696 * 117.00085 * 180.02562 * 22 20 18 38 38 H 1.09002 * 109.47153 * 60.00231 * 23 18 17 39 39 H 1.09001 * 109.47289 * 180.02562 * 23 18 17 40 40 H 1.09000 * 109.47486 * 59.99528 * 24 14 13 41 41 H 1.09002 * 109.46716 * 299.99610 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5852 -0.0017 11 6 1.5652 -4.8753 -0.0013 12 6 2.6482 -5.9561 -0.0020 13 7 3.4091 -5.8877 1.2528 14 6 4.4606 -6.9128 1.2874 15 1 4.8620 -7.0556 0.2841 16 6 5.5818 -6.4620 2.2259 17 6 6.6772 -7.5296 2.2614 18 6 6.0883 -8.8481 2.7670 19 1 5.6869 -8.7057 3.7703 20 6 7.1674 -9.8994 2.8025 21 8 8.2922 -9.6224 2.4592 22 8 6.8792 -11.1433 3.2166 23 6 4.9672 -9.2989 1.8285 24 6 3.8712 -8.2310 1.7932 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 0.9442 -4.9823 -0.8906 29 1 0.9460 -4.9825 0.8893 30 1 3.3212 -5.7955 -0.8442 31 1 2.1822 -6.9374 -0.0912 32 1 2.7978 -5.9693 2.0513 33 1 5.1804 -6.3192 3.2292 34 1 6.0016 -5.5229 1.8654 35 1 7.0785 -7.6719 1.2581 36 1 7.4758 -7.2086 2.9303 37 1 7.6043 -11.7830 3.2224 38 1 5.3685 -9.4413 0.8251 39 1 4.5473 -10.2380 2.1889 40 1 3.0725 -8.5522 1.1246 41 1 3.4699 -8.0882 2.7965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709961917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:11 Heat of formation + Delta-G solvation = -163.625137 kcal Electronic energy + Delta-G solvation = -20618.079131 eV Core-core repulsion = 17303.824081 eV Total energy + Delta-G solvation = -3314.255050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87318 -38.82122 -36.85486 -36.44195 -34.79949 -32.65134 -31.07976 -30.61970 -27.83796 -26.42998 -23.85994 -22.91017 -22.26235 -21.57219 -21.13484 -19.97994 -18.33201 -17.05904 -16.50878 -16.23075 -15.71690 -15.61922 -15.11042 -14.51198 -14.41842 -14.07291 -13.97051 -13.73163 -13.36140 -13.05738 -12.78556 -12.47503 -12.22961 -11.95703 -11.89611 -11.51420 -11.42893 -11.33613 -11.16435 -10.80325 -10.76188 -10.72483 -10.60888 -10.49713 -10.27987 -9.92387 -9.04072 -8.76008 -8.15065 -8.08180 -6.06065 -4.06871 1.86927 2.69540 3.34065 3.38787 3.45046 4.14150 4.32200 4.35797 4.39717 4.64613 4.82135 4.90458 5.00253 5.07078 5.12056 5.22476 5.29632 5.30470 5.48034 5.55614 5.61756 5.63245 5.71086 5.78052 5.85617 5.96160 6.03905 6.11460 6.14873 6.22707 6.28439 6.34071 7.14934 7.23326 7.48655 7.55025 7.58541 7.86093 8.22162 8.67073 9.08101 9.57910 11.05642 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035397 B = 0.002830 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.831661 B = 9890.272054 C =10497.949558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.085 3.915 15 H 0.077 0.923 16 C -0.106 4.106 17 C -0.103 4.103 18 C -0.079 4.079 19 H 0.110 0.890 20 C 0.481 3.519 21 O -0.514 6.514 22 O -0.518 6.518 23 C -0.105 4.105 24 C -0.149 4.149 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.340 0.660 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -22.507 5.865 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.014 4.014 12 C -0.064 4.064 13 N -0.300 5.300 14 C -0.025 4.025 15 H 0.096 0.904 16 C -0.144 4.144 17 C -0.142 4.142 18 C -0.098 4.098 19 H 0.128 0.872 20 C 0.324 3.676 21 O -0.402 6.402 22 O -0.330 6.330 23 C -0.143 4.143 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.266 0.734 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.843 -21.462 5.527 24.250 hybrid contribution -0.088 -0.474 0.181 0.515 sum 9.756 -21.936 5.708 24.676 Atomic orbital electron populations 1.69966 1.06107 1.27040 1.50948 1.24953 0.94965 0.99421 0.95285 0.86345 0.79719 0.82302 0.78185 1.20530 1.21155 1.19575 1.21071 0.94115 0.89355 1.50266 0.91494 1.20178 0.88861 0.83953 0.95090 1.87957 1.34629 1.12339 1.95012 1.22234 0.93909 0.86415 0.98817 1.22009 0.95797 0.95520 0.93048 1.60397 1.16291 1.49001 1.04338 1.21650 0.92953 0.88322 0.99584 0.90445 1.21514 0.94542 0.98338 1.00054 1.21487 0.98222 0.91934 1.02513 1.21165 0.93378 0.92066 1.03193 0.87244 1.23700 0.89441 0.82180 0.72326 1.90729 1.23872 1.81020 1.44589 1.84553 1.46617 1.22259 1.79521 1.21463 0.94632 0.99126 0.99062 1.22351 0.97960 0.96314 1.02220 0.92756 0.98049 0.97909 0.94281 0.94843 0.90447 0.94903 0.84195 0.91622 0.90010 0.90928 0.90822 0.73360 0.91328 0.90701 0.91441 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.40 5.69 36.00 0.20 5.60 16 10 O -0.38 -9.29 10.27 -35.23 -0.36 -9.65 16 11 C 0.06 1.18 6.22 37.16 0.23 1.41 16 12 C 0.07 0.94 5.87 -3.82 -0.02 0.92 16 13 N -0.67 -9.23 6.20 -106.73 -0.66 -9.89 16 14 C 0.09 0.91 2.47 -67.72 -0.17 0.74 16 15 H 0.08 0.87 7.80 -51.93 -0.40 0.46 16 16 C -0.11 -1.10 5.53 -26.73 -0.15 -1.24 16 17 C -0.10 -0.95 4.49 -26.73 -0.12 -1.07 16 18 C -0.08 -0.62 2.63 -91.78 -0.24 -0.86 16 19 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 20 C 0.48 4.31 7.63 36.00 0.27 4.58 16 21 O -0.51 -6.26 16.74 -18.75 -0.31 -6.58 16 22 O -0.52 -3.39 13.33 -39.25 -0.52 -3.91 16 23 C -0.10 -0.77 5.14 -26.70 -0.14 -0.91 16 24 C -0.15 -1.23 5.18 -26.70 -0.14 -1.36 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 31 H 0.03 0.38 7.44 -51.93 -0.39 0.00 16 32 H 0.34 4.37 8.47 -39.29 -0.33 4.04 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.41 1.05 9.10 45.56 0.41 1.47 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.07 0.55 7.45 -51.93 -0.39 0.17 16 41 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -34.35 338.43 -7.86 -42.21 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.13 Total: -1.53 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.69 Total: -6.32 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.08 Total: -36.46 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.20 Total: -20.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.35 -7.86 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.418 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds