Wall clock time and date at job start Mon Mar 30 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99634 * 2 1 4 4 H 1.48501 * 109.47003 * 269.99896 * 3 2 1 5 5 H 1.48495 * 109.47079 * 30.00200 * 3 2 1 6 6 H 1.48501 * 109.46818 * 150.00380 * 3 2 1 7 7 C 1.37875 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99731 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00252 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47388 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46994 * 65.00397 * 12 11 10 14 14 C 1.46894 * 111.00270 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47104 * 34.99612 * 14 13 12 16 16 C 1.52997 * 109.47515 * 154.99879 * 14 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 14 19 19 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 20 20 C 1.50693 * 109.47531 * 180.02562 * 18 17 16 21 21 O 1.20828 * 119.99953 * 0.02562 * 20 18 17 22 22 O 1.34226 * 120.00533 * 179.97438 * 20 18 17 23 23 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 24 24 C 1.52999 * 109.46927 * 275.00239 * 14 13 12 25 25 H 0.97001 * 120.00136 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47265 * 59.99881 * 9 7 2 27 27 H 1.08995 * 109.47273 * 299.99811 * 9 7 2 28 28 H 1.09001 * 109.46868 * 60.00429 * 11 10 9 29 29 H 1.09001 * 109.47385 * 300.00659 * 11 10 9 30 30 H 1.09000 * 109.47032 * 305.00654 * 12 11 10 31 31 H 1.08998 * 109.47074 * 185.00185 * 12 11 10 32 32 H 1.00901 * 111.00119 * 56.04572 * 13 12 11 33 33 H 1.09002 * 109.47153 * 59.99762 * 16 14 13 34 34 H 1.09001 * 109.46832 * 299.99953 * 16 14 13 35 35 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 36 36 H 1.09004 * 109.46724 * 180.02562 * 17 16 14 37 37 H 0.96696 * 117.00085 * 180.02562 * 22 20 18 38 38 H 1.09002 * 109.47153 * 60.00231 * 23 18 17 39 39 H 1.09001 * 109.47289 * 180.02562 * 23 18 17 40 40 H 1.09000 * 109.47486 * 59.99528 * 24 14 13 41 41 H 1.09002 * 109.46716 * 299.99610 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5852 -0.0017 11 6 1.5652 -4.8753 -0.0013 12 6 2.6482 -5.9561 -0.0020 13 7 3.4091 -5.8877 1.2528 14 6 4.4606 -6.9128 1.2874 15 1 4.8620 -7.0556 0.2841 16 6 5.5818 -6.4620 2.2259 17 6 6.6772 -7.5296 2.2614 18 6 6.0883 -8.8481 2.7670 19 1 5.6869 -8.7057 3.7703 20 6 7.1674 -9.8994 2.8025 21 8 8.2922 -9.6224 2.4592 22 8 6.8792 -11.1433 3.2166 23 6 4.9672 -9.2989 1.8285 24 6 3.8712 -8.2310 1.7932 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 0.9442 -4.9823 -0.8906 29 1 0.9460 -4.9825 0.8893 30 1 3.3212 -5.7955 -0.8442 31 1 2.1822 -6.9374 -0.0912 32 1 2.7978 -5.9693 2.0513 33 1 5.1804 -6.3192 3.2292 34 1 6.0016 -5.5229 1.8654 35 1 7.0785 -7.6719 1.2581 36 1 7.4758 -7.2086 2.9303 37 1 7.6043 -11.7830 3.2224 38 1 5.3685 -9.4413 0.8251 39 1 4.5473 -10.2380 2.1889 40 1 3.0725 -8.5522 1.1246 41 1 3.4699 -8.0882 2.7965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709961917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:11 Heat of formation + Delta-G solvation = -188.833683 kcal Electronic energy + Delta-G solvation = -20619.172256 eV Core-core repulsion = 17303.824081 eV Total energy + Delta-G solvation = -3315.348174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56684 -39.67094 -38.50460 -37.13498 -35.95769 -34.80963 -31.90923 -31.61861 -29.52953 -28.02536 -24.74061 -24.40634 -23.60250 -22.84575 -21.89144 -20.72983 -18.99307 -18.61034 -17.74041 -17.51937 -17.09569 -16.79400 -16.45790 -16.11309 -15.43219 -15.27544 -15.00546 -14.83897 -14.43504 -14.15073 -13.96002 -13.62419 -13.40209 -13.14334 -13.01036 -12.78869 -12.66528 -12.56060 -12.36627 -12.19790 -12.16475 -12.06032 -11.74286 -11.49028 -11.32558 -11.23042 -11.12505 -10.83939 -10.15988 -9.13204 -8.30378 -6.42039 1.19181 1.40743 1.43610 1.55990 2.12756 2.36644 3.03211 3.18629 3.29641 3.61964 3.69425 3.96093 4.10031 4.21193 4.31272 4.34460 4.41087 4.44343 4.52741 4.57131 4.61006 4.67120 4.79637 4.87502 4.89509 5.00544 5.05556 5.11392 5.18172 5.22091 5.22483 5.41583 5.43790 5.57673 5.62222 5.99870 6.22191 6.55869 6.62637 6.89658 6.99495 7.30350 8.81952 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035397 B = 0.002830 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.831661 B = 9890.272054 C =10497.949558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.397 6.397 11 C 0.053 3.947 12 C 0.077 3.923 13 N -0.695 5.695 14 C 0.087 3.913 15 H 0.070 0.930 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.077 4.077 19 H 0.127 0.873 20 C 0.488 3.512 21 O -0.553 6.553 22 O -0.510 6.510 23 C -0.098 4.098 24 C -0.140 4.140 25 H 0.270 0.730 26 H -0.017 1.017 27 H -0.016 1.016 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.344 0.656 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.426 0.574 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.629 -23.412 6.474 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.317 6.317 11 C -0.024 4.024 12 C -0.052 4.052 13 N -0.326 5.326 14 C -0.023 4.023 15 H 0.088 0.912 16 C -0.140 4.140 17 C -0.135 4.135 18 C -0.096 4.096 19 H 0.145 0.855 20 C 0.332 3.668 21 O -0.444 6.444 22 O -0.324 6.324 23 C -0.136 4.136 24 C -0.179 4.179 25 H 0.079 0.921 26 H 0.001 0.999 27 H 0.002 0.998 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.287 0.713 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.064 -22.422 6.143 25.333 hybrid contribution -0.186 -0.308 0.009 0.360 sum 9.878 -22.731 6.152 25.536 Atomic orbital electron populations 1.70066 1.07707 1.28580 1.50739 1.25955 0.95975 1.03354 0.94004 0.85198 0.78383 0.77095 0.78824 1.19304 1.19816 1.18978 1.21389 0.94015 0.91001 1.51907 0.92279 1.19785 0.88662 0.85016 0.93187 1.87912 1.34710 1.13967 1.95066 1.22625 0.95683 0.84625 0.99460 1.21878 0.94681 0.95478 0.93163 1.60335 1.16938 1.51095 1.04188 1.21647 0.92138 0.89027 0.99448 0.91205 1.21434 0.94734 0.97629 1.00170 1.21361 0.97670 0.92585 1.01879 1.21154 0.93226 0.90961 1.04244 0.85476 1.23784 0.88848 0.82829 0.71343 1.90724 1.25422 1.81761 1.46504 1.84506 1.47475 1.21724 1.78670 1.21421 0.93988 0.99401 0.98796 1.22237 0.98134 0.94765 1.02727 0.92078 0.99929 0.99803 0.93636 0.94104 0.91463 0.91187 0.83696 0.91012 0.92477 0.92074 0.91296 0.71260 0.91690 0.89094 0.90825 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.98 45.25 29.54 68.60 2.03 47.28 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -33.36 9.43 25.60 0.24 -33.12 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.00 5.69 71.23 0.41 12.41 16 10 O -0.40 -19.83 10.27 -148.98 -1.53 -21.36 16 11 C 0.05 1.95 6.22 71.98 0.45 2.39 16 12 C 0.08 2.13 5.87 86.30 0.51 2.63 16 13 N -0.69 -18.56 6.20 -491.58 -3.05 -21.61 16 14 C 0.09 1.76 2.47 44.92 0.11 1.87 16 15 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 16 C -0.10 -2.06 5.53 30.59 0.17 -1.89 16 17 C -0.10 -1.74 4.49 30.60 0.14 -1.60 16 18 C -0.08 -1.07 2.63 -11.54 -0.03 -1.10 16 19 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 20 C 0.49 7.94 7.63 71.23 0.54 8.48 16 21 O -0.55 -13.13 16.74 21.96 0.37 -12.76 16 22 O -0.51 -5.41 13.33 -51.38 -0.68 -6.09 16 23 C -0.10 -1.19 5.14 30.61 0.16 -1.03 16 24 C -0.14 -1.94 5.18 30.61 0.16 -1.78 16 25 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 31 H 0.07 1.44 7.44 -2.39 -0.02 1.42 16 32 H 0.34 8.47 8.47 -89.69 -0.76 7.71 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.43 1.21 9.10 -74.06 -0.67 0.54 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 40 H 0.07 0.97 7.45 -2.39 -0.02 0.95 16 41 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 Total: -1.00 -74.50 338.43 0.31 -74.19 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -0.41 Total: 8.80 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 3.31 Total: -11.95 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -2.76 Total: -78.10 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.85 Total: -40.22 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -74.50 0.31 -74.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.645 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds