Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46807 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.33441 * 305.69805 * 15 14 13 17 17 C 1.54490 * 110.36935 * 183.45028 * 15 14 13 18 18 C 1.54506 * 104.05900 * 217.18738 * 17 15 14 19 19 H 1.09007 * 110.50854 * 118.64967 * 18 17 15 20 20 C 1.50699 * 110.51362 * 241.21549 * 18 17 15 21 21 O 1.20832 * 119.99560 * 0.02562 * 20 18 17 22 22 O 1.34230 * 120.00379 * 180.02562 * 20 18 17 23 23 C 1.54476 * 104.06741 * 0.02562 * 18 17 15 24 24 O 1.44418 * 110.37460 * 67.95073 * 15 14 13 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 34 34 H 1.00899 * 111.00283 * 56.04461 * 13 12 11 35 35 H 1.09006 * 109.46661 * 299.99622 * 14 13 12 36 36 H 1.08995 * 109.47087 * 60.00099 * 14 13 12 37 37 H 1.08994 * 110.50819 * 335.83037 * 17 15 14 38 38 H 1.08993 * 110.50892 * 98.54153 * 17 15 14 39 39 H 0.96702 * 116.99834 * 180.02562 * 22 20 18 40 40 H 1.09000 * 110.37111 * 142.80710 * 23 18 17 41 41 H 1.09003 * 110.37244 * 265.03407 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 2.6647 -8.5638 0.0018 15 6 1.8646 -9.8679 0.0025 16 1 1.1585 -9.8786 0.8327 17 6 2.8157 -11.0822 0.0896 18 6 2.1539 -12.1432 -0.8179 19 1 2.8157 -12.4062 -1.6432 20 6 1.7937 -13.3699 -0.0202 21 8 2.0339 -13.4130 1.1632 22 8 1.2061 -14.4147 -0.6243 23 6 0.8818 -11.4443 -1.3466 24 8 1.1680 -10.0310 -1.2521 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.1014 -6.0927 -0.8882 33 1 3.1013 -6.0918 0.8917 34 1 1.1040 -7.4724 -0.7797 35 1 3.2926 -8.5227 -0.8883 36 1 3.2926 -8.5228 0.8918 37 1 3.8045 -10.8206 -0.2869 38 1 2.8801 -11.4439 1.1158 39 1 0.9936 -15.1790 -0.0712 40 1 0.6967 -11.7264 -2.3830 41 1 0.0229 -11.6990 -0.7256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714020559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = -162.141810 kcal Electronic energy + Delta-G solvation = -19991.589594 eV Core-core repulsion = 16677.398866 eV Total energy + Delta-G solvation = -3314.190728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21043 -39.44095 -36.71953 -36.56458 -34.18689 -32.86880 -32.32250 -30.54513 -28.03143 -25.36860 -24.72534 -23.62941 -21.75559 -21.36328 -20.68205 -19.92901 -18.76704 -17.72681 -16.71222 -16.54620 -16.11653 -15.66153 -15.50376 -15.13801 -14.53472 -14.28288 -14.15287 -13.96915 -13.29475 -13.02083 -12.53545 -12.32731 -12.24110 -12.12664 -11.93008 -11.82754 -11.49217 -11.35284 -11.12970 -10.96239 -10.94806 -10.51774 -10.44572 -10.37923 -10.17792 -9.57997 -9.21342 -8.96140 -8.36718 -8.28860 -5.94198 -3.96289 1.61034 2.39290 3.35138 3.41056 3.44709 3.48420 3.78182 4.02719 4.28999 4.41389 4.50679 4.73504 4.78504 4.87646 5.00924 5.14997 5.20305 5.37825 5.41111 5.42395 5.46560 5.51767 5.65369 5.72949 5.94638 5.96104 6.20639 6.28651 6.39355 6.56852 6.87978 7.00627 7.07487 7.27449 7.31409 7.47641 7.75339 7.91710 8.07314 8.50035 9.11298 9.67265 11.17154 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.068613 B = 0.002131 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.985452 B =13137.024063 C =13292.723262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.691 5.691 14 C 0.066 3.934 15 C 0.075 3.925 16 H 0.084 0.916 17 C -0.145 4.145 18 C -0.119 4.119 19 H 0.123 0.877 20 C 0.488 3.512 21 O -0.508 6.508 22 O -0.514 6.514 23 C 0.063 3.937 24 O -0.362 6.362 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.347 0.653 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -29.772 -2.531 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.322 5.322 14 C -0.064 4.064 15 C 0.018 3.982 16 H 0.102 0.898 17 C -0.183 4.183 18 C -0.138 4.138 19 H 0.141 0.859 20 C 0.329 3.671 21 O -0.395 6.395 22 O -0.326 6.326 23 C -0.014 4.014 24 O -0.280 6.280 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.165 0.835 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.272 0.728 40 H 0.124 0.876 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.924 -29.152 -1.909 29.476 hybrid contribution 0.703 0.189 -0.434 0.848 sum 4.627 -28.962 -2.343 29.423 Atomic orbital electron populations 1.69973 1.06030 1.26481 1.51074 1.25045 0.94860 0.99235 0.95489 0.86604 0.79841 0.83571 0.78030 1.20732 1.21252 1.19923 1.21295 0.93009 0.91231 1.50231 0.92782 1.19095 0.94051 0.91339 0.97178 1.21588 0.99078 0.93984 1.00050 1.21633 0.97881 0.93782 1.02051 1.22078 0.96263 0.88516 1.00080 1.60511 1.19683 1.01477 1.50536 1.21997 0.94191 0.88861 1.01350 1.23185 0.93312 0.94327 0.87416 0.89828 1.23103 1.00002 0.93352 1.01893 1.22431 1.00918 0.91001 0.99499 0.85928 1.23142 0.73355 0.84009 0.86547 1.90736 1.50569 1.81157 1.17071 1.84530 1.72947 1.27884 1.47208 1.23260 0.94053 0.81383 1.02717 1.89217 1.77106 1.22620 1.39100 0.93073 0.96721 0.96583 0.93462 0.93685 0.92689 0.91652 0.95529 0.91297 0.83475 0.94408 0.89639 0.89223 0.87797 0.72796 0.87561 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 11 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 12 C 0.06 0.86 5.69 -3.82 -0.02 0.84 16 13 N -0.69 -9.05 6.50 -113.78 -0.74 -9.79 16 14 C 0.07 0.69 5.31 -3.82 -0.02 0.67 16 15 C 0.08 0.71 3.51 -25.95 -0.09 0.62 16 16 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.15 -1.08 6.22 -25.16 -0.16 -1.23 16 18 C -0.12 -0.75 3.62 -90.21 -0.33 -1.08 16 19 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 20 C 0.49 3.50 7.52 36.01 0.27 3.77 16 21 O -0.51 -5.26 16.04 -18.76 -0.30 -5.56 16 22 O -0.51 -2.46 13.42 -39.26 -0.53 -2.98 16 23 C 0.06 0.44 7.18 37.93 0.27 0.72 16 24 O -0.36 -3.64 11.03 -35.23 -0.39 -4.03 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.35 4.59 8.44 -39.29 -0.33 4.26 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.56 7.87 -51.93 -0.41 0.15 16 38 H 0.10 0.87 6.50 -51.93 -0.34 0.53 16 39 H 0.41 0.37 9.10 45.56 0.41 0.78 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.45 7.86 -51.93 -0.41 0.04 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -34.01 342.02 -8.10 -42.12 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.11 Total: -1.25 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.91 Total: -13.87 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.00 Total: -36.65 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.22 Total: -12.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.01 -8.10 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714020559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.026 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds