Wall clock time and date at job start Mon Mar 30 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46807 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.33441 * 305.69805 * 15 14 13 17 17 C 1.54490 * 110.36935 * 183.45028 * 15 14 13 18 18 C 1.54506 * 104.05900 * 217.18738 * 17 15 14 19 19 H 1.09007 * 110.50854 * 118.64967 * 18 17 15 20 20 C 1.50699 * 110.51362 * 241.21549 * 18 17 15 21 21 O 1.20832 * 119.99560 * 0.02562 * 20 18 17 22 22 O 1.34230 * 120.00379 * 180.02562 * 20 18 17 23 23 C 1.54476 * 104.06741 * 0.02562 * 18 17 15 24 24 O 1.44418 * 110.37460 * 67.95073 * 15 14 13 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 34 34 H 1.00899 * 111.00283 * 56.04461 * 13 12 11 35 35 H 1.09006 * 109.46661 * 299.99622 * 14 13 12 36 36 H 1.08995 * 109.47087 * 60.00099 * 14 13 12 37 37 H 1.08994 * 110.50819 * 335.83037 * 17 15 14 38 38 H 1.08993 * 110.50892 * 98.54153 * 17 15 14 39 39 H 0.96702 * 116.99834 * 180.02562 * 22 20 18 40 40 H 1.09000 * 110.37111 * 142.80710 * 23 18 17 41 41 H 1.09003 * 110.37244 * 265.03407 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7402 -7.4222 0.0018 14 6 2.6647 -8.5638 0.0018 15 6 1.8646 -9.8679 0.0025 16 1 1.1585 -9.8786 0.8327 17 6 2.8157 -11.0822 0.0896 18 6 2.1539 -12.1432 -0.8179 19 1 2.8157 -12.4062 -1.6432 20 6 1.7937 -13.3699 -0.0202 21 8 2.0339 -13.4130 1.1632 22 8 1.2061 -14.4147 -0.6243 23 6 0.8818 -11.4443 -1.3466 24 8 1.1680 -10.0310 -1.2521 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.1014 -6.0927 -0.8882 33 1 3.1013 -6.0918 0.8917 34 1 1.1040 -7.4724 -0.7797 35 1 3.2926 -8.5227 -0.8883 36 1 3.2926 -8.5228 0.8918 37 1 3.8045 -10.8206 -0.2869 38 1 2.8801 -11.4439 1.1158 39 1 0.9936 -15.1790 -0.0712 40 1 0.6967 -11.7264 -2.3830 41 1 0.0229 -11.6990 -0.7256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714020559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:33 Heat of formation + Delta-G solvation = -187.013256 kcal Electronic energy + Delta-G solvation = -19992.668101 eV Core-core repulsion = 16677.398866 eV Total energy + Delta-G solvation = -3315.269235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77673 -40.07712 -37.79820 -37.20139 -35.91003 -34.14909 -33.47180 -31.70721 -29.54103 -26.74193 -25.32025 -24.97492 -22.84251 -22.52290 -21.63936 -21.26393 -19.29144 -18.43933 -18.29225 -17.34856 -17.28414 -16.52901 -16.49111 -16.19690 -16.07352 -15.52412 -15.16631 -14.62809 -14.49328 -14.25172 -13.66206 -13.64640 -13.52819 -13.13801 -12.91458 -12.82067 -12.66271 -12.49643 -12.41206 -12.20065 -12.10180 -12.05362 -11.85942 -11.55845 -11.36372 -11.29253 -10.96239 -10.86609 -10.54739 -9.38006 -8.19065 -6.30685 1.07470 1.39926 1.41967 1.53168 1.95918 2.41557 2.86757 3.10518 3.13380 3.28249 3.68213 3.92272 4.03573 4.10976 4.16416 4.20335 4.29626 4.42004 4.54766 4.57323 4.67757 4.71655 4.76791 4.80203 4.86467 4.90061 4.95334 5.02878 5.25266 5.28917 5.36921 5.54777 5.56110 5.73505 5.78949 5.87726 6.07910 6.26492 6.43385 6.86979 6.90598 7.38489 8.92870 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.068613 B = 0.002131 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.985452 B =13137.024063 C =13292.723262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.071 3.929 13 N -0.700 5.700 14 C 0.066 3.934 15 C 0.077 3.923 16 H 0.069 0.931 17 C -0.140 4.140 18 C -0.115 4.115 19 H 0.148 0.852 20 C 0.494 3.506 21 O -0.545 6.545 22 O -0.507 6.507 23 C 0.060 3.940 24 O -0.382 6.382 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.345 0.655 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.430 0.570 40 H 0.126 0.874 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -30.572 -3.236 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.331 5.331 14 C -0.063 4.063 15 C 0.020 3.980 16 H 0.087 0.913 17 C -0.178 4.178 18 C -0.134 4.134 19 H 0.165 0.835 20 C 0.337 3.663 21 O -0.436 6.436 22 O -0.321 6.321 23 C -0.017 4.017 24 O -0.301 6.301 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.292 0.708 40 H 0.144 0.856 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.503 -29.996 -2.625 30.609 hybrid contribution 0.126 0.364 -0.237 0.452 sum 5.629 -29.632 -2.862 30.298 Atomic orbital electron populations 1.70113 1.07875 1.27758 1.51776 1.26059 0.95842 1.03584 0.94787 0.85403 0.78629 0.78209 0.78527 1.19684 1.20720 1.18652 1.21749 0.93599 0.92480 1.50379 0.92094 1.19033 0.94556 0.93386 0.94577 1.21395 0.97962 0.93565 1.00546 1.21466 0.98098 0.93501 1.01355 1.21858 0.95246 0.87962 1.00724 1.60472 1.20294 1.01675 1.50633 1.22067 0.93977 0.88199 1.02018 1.23088 0.93352 0.94648 0.86953 0.91291 1.23029 1.00327 0.92724 1.01744 1.22450 1.00877 0.90326 0.99725 0.83475 1.23255 0.72584 0.84492 0.85934 1.90731 1.52289 1.81942 1.18633 1.84493 1.72127 1.28127 1.47321 1.23418 0.94240 0.80057 1.03973 1.89195 1.77335 1.24479 1.39095 0.92790 0.99289 0.99301 0.92937 0.93018 0.93075 0.92742 0.94786 0.90703 0.83681 0.93735 0.88816 0.87711 0.88858 0.70797 0.85561 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.54 13.29 21.45 0.28 -58.25 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.19 4.97 29.84 0.15 1.34 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 11 C -0.11 -3.74 5.47 30.59 0.17 -3.58 16 12 C 0.07 1.98 5.69 86.30 0.49 2.47 16 13 N -0.70 -17.69 6.50 -513.88 -3.34 -21.03 16 14 C 0.07 1.30 5.31 86.30 0.46 1.75 16 15 C 0.08 1.38 3.51 31.10 0.11 1.49 16 16 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.14 -1.87 6.22 31.61 0.20 -1.68 16 18 C -0.11 -1.22 3.62 -10.53 -0.04 -1.26 16 19 H 0.15 0.87 8.14 -2.38 -0.02 0.85 16 20 C 0.49 6.38 7.52 71.24 0.54 6.92 16 21 O -0.55 -10.99 16.04 21.94 0.35 -10.63 16 22 O -0.51 -3.84 13.42 -51.41 -0.69 -4.53 16 23 C 0.06 0.74 7.18 72.48 0.52 1.26 16 24 O -0.38 -7.24 11.03 -148.98 -1.64 -8.89 16 25 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.35 8.93 8.44 -89.69 -0.76 8.17 16 35 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 1.07 7.87 -2.39 -0.02 1.05 16 38 H 0.09 1.50 6.50 -2.39 -0.02 1.48 16 39 H 0.43 -0.02 9.10 -74.06 -0.67 -0.70 16 40 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 0.79 7.86 -2.39 -0.02 0.77 16 Total: -1.00 -73.47 342.02 0.02 -73.45 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -0.41 Total: 9.48 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.44 Total: -26.82 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.06 Total: -79.28 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.98 Total: -24.05 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.47 0.02 -73.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714020559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.559 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds