Wall clock time and date at job start Mon Mar 30 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47107 * 240.00198 * 3 2 1 5 5 H 1.48500 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47345 * 120.00416 * 3 2 1 7 7 C 1.37873 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47261 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.46957 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00093 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47436 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.86973 * 59.55787 * 15 14 13 17 17 C 1.54099 * 109.88116 * 180.71820 * 15 14 13 18 18 C 1.54984 * 104.25432 * 121.59324 * 17 15 14 19 19 H 1.09003 * 110.84226 * 262.54019 * 18 17 15 20 20 C 1.50704 * 111.05029 * 138.88613 * 18 17 15 21 21 O 1.20820 * 119.99922 * 5.85480 * 20 18 17 22 22 O 1.34227 * 119.99679 * 185.85801 * 20 18 17 23 23 C 1.54997 * 102.01247 * 20.66679 * 18 17 15 24 24 O 1.43743 * 109.88386 * 298.55068 * 15 14 13 25 25 H 0.97002 * 119.99716 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47161 * 59.99932 * 9 7 2 27 27 H 1.08999 * 109.47004 * 299.99394 * 9 7 2 28 28 H 1.09002 * 109.47699 * 59.99943 * 10 9 7 29 29 H 1.09001 * 109.47115 * 299.99527 * 10 9 7 30 30 H 1.08999 * 109.46861 * 59.99919 * 11 10 9 31 31 H 1.08992 * 109.46898 * 300.00151 * 11 10 9 32 32 H 1.08999 * 109.46933 * 60.00349 * 12 11 10 33 33 H 1.09001 * 109.47473 * 299.99944 * 12 11 10 34 34 H 1.00900 * 111.00185 * 56.04701 * 13 12 11 35 35 H 1.09009 * 109.46843 * 60.00404 * 14 13 12 36 36 H 1.08994 * 109.47169 * 300.00495 * 14 13 12 37 37 H 1.09006 * 110.48596 * 240.13309 * 17 15 14 38 38 H 1.08995 * 110.48837 * 2.64693 * 17 15 14 39 39 H 0.96701 * 116.99637 * 179.97438 * 22 20 18 40 40 H 1.09002 * 110.61957 * 204.59612 * 23 18 17 41 41 H 1.09000 * 110.61969 * 81.75502 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 6 2.4747 -6.1500 -0.0024 13 7 1.7402 -7.4221 -0.0023 14 6 2.6647 -8.5638 -0.0033 15 6 1.8647 -9.8679 -0.0025 16 1 1.2273 -9.9121 -0.8857 17 6 2.8258 -11.0723 0.0146 18 6 2.4364 -11.8531 1.2956 19 1 3.0999 -11.5980 2.1220 20 6 2.4390 -13.3392 1.0454 21 8 2.8236 -13.7727 -0.0147 22 8 2.0138 -14.1812 2.0004 23 6 0.9985 -11.3394 1.5618 24 8 1.0596 -9.9469 1.1857 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8880 28 1 2.8714 -3.6047 0.8890 29 1 2.8726 -3.6039 -0.8910 30 1 0.8542 -5.0447 -0.8922 31 1 0.8534 -5.0449 0.8876 32 1 3.1012 -6.0925 0.8877 33 1 3.1014 -6.0919 -0.8923 34 1 1.1036 -7.4722 -0.7835 35 1 3.2932 -8.5230 0.8864 36 1 3.2921 -8.5225 -0.8936 37 1 2.6749 -11.6934 -0.8683 38 1 3.8605 -10.7339 0.0696 39 1 2.0336 -15.1256 1.7935 40 1 0.7437 -11.4413 2.6168 41 1 0.2790 -11.8734 0.9411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714020564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:36 Heat of formation + Delta-G solvation = -160.036525 kcal Electronic energy + Delta-G solvation = -19979.870296 eV Core-core repulsion = 16665.770860 eV Total energy + Delta-G solvation = -3314.099436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14887 -39.45227 -36.70943 -36.57522 -34.19176 -32.81577 -32.31973 -30.55571 -28.03014 -25.30089 -24.72778 -23.57732 -21.83421 -21.35408 -20.73449 -19.92831 -18.70840 -17.68119 -16.98469 -16.20095 -15.92911 -15.84872 -15.32267 -15.13495 -14.54417 -14.29295 -14.17281 -13.96211 -13.48535 -12.88755 -12.55675 -12.28521 -12.25904 -12.12043 -11.90156 -11.84739 -11.55276 -11.30996 -11.13645 -10.97497 -10.93592 -10.50125 -10.47576 -10.38060 -10.00202 -9.57828 -9.21194 -8.96918 -8.32203 -8.28289 -5.94032 -3.96244 1.61772 2.39520 3.36554 3.40645 3.43243 3.50019 3.78758 4.06330 4.29964 4.44490 4.50629 4.64056 4.75306 4.85537 5.06674 5.13718 5.24304 5.35445 5.41093 5.41347 5.44357 5.50860 5.59963 5.77928 5.93875 5.95649 6.20477 6.28743 6.53017 6.57963 6.88140 7.01206 7.08698 7.27819 7.32089 7.45703 7.75056 7.91785 8.07369 8.50009 9.11109 9.67240 11.17252 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.068624 B = 0.002130 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.921063 B =13140.953606 C =13307.764798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.683 5.683 14 C 0.059 3.941 15 C 0.079 3.921 16 H 0.072 0.928 17 C -0.140 4.140 18 C -0.120 4.120 19 H 0.127 0.873 20 C 0.491 3.509 21 O -0.511 6.511 22 O -0.513 6.513 23 C 0.060 3.940 24 O -0.341 6.341 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.339 0.661 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -29.037 2.095 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.314 5.314 14 C -0.070 4.070 15 C 0.021 3.979 16 H 0.090 0.910 17 C -0.178 4.178 18 C -0.140 4.140 19 H 0.145 0.855 20 C 0.333 3.667 21 O -0.399 6.399 22 O -0.325 6.325 23 C -0.018 4.018 24 O -0.259 6.259 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.272 0.728 40 H 0.125 0.875 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.364 -28.430 2.680 28.888 hybrid contribution 0.970 0.084 -1.173 1.524 sum 5.334 -28.346 1.507 28.883 Atomic orbital electron populations 1.69963 1.06027 1.26593 1.50966 1.25041 0.94862 0.99218 0.95475 0.86666 0.79571 0.83229 0.78554 1.20322 1.21319 1.20270 1.21258 0.92966 0.91249 1.50386 0.92843 1.19089 0.94041 0.91316 0.97173 1.21591 0.99078 0.94015 1.00020 1.21629 0.97872 0.93751 1.02062 1.22082 0.96220 0.88559 1.00006 1.60420 1.19491 1.01347 1.50106 1.22165 0.94269 0.89386 1.01222 1.22829 0.91520 0.94255 0.89294 0.90969 1.23052 1.01487 0.96163 0.97145 1.22657 1.02127 0.87195 1.01985 0.85540 1.23067 0.72753 0.89856 0.81027 1.90736 1.43789 1.78859 1.26499 1.84539 1.78682 1.23136 1.46115 1.23459 0.92366 0.83567 1.02373 1.89144 1.70939 1.22471 1.43349 0.93013 0.96740 0.96573 0.93456 0.93737 0.92785 0.91548 0.91280 0.95701 0.84331 0.90260 0.94035 0.88646 0.89112 0.72836 0.87493 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.17 16 12 C 0.06 0.86 5.69 -3.83 -0.02 0.84 16 13 N -0.68 -8.78 6.41 -113.78 -0.73 -9.51 16 14 C 0.06 0.60 5.16 -3.83 -0.02 0.58 16 15 C 0.08 0.71 3.63 -26.16 -0.09 0.62 16 16 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 17 C -0.14 -1.02 6.04 -25.11 -0.15 -1.17 16 18 C -0.12 -0.80 3.63 -89.67 -0.33 -1.12 16 19 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 20 C 0.49 3.53 7.64 36.01 0.28 3.81 16 21 O -0.51 -5.22 16.28 -18.75 -0.31 -5.53 16 22 O -0.51 -2.51 13.41 -39.25 -0.53 -3.03 16 23 C 0.06 0.44 7.15 38.21 0.27 0.71 16 24 O -0.34 -3.67 11.09 -35.23 -0.39 -4.06 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.34 4.09 8.73 -39.29 -0.34 3.74 16 35 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.75 6.95 -51.93 -0.36 0.39 16 38 H 0.09 0.57 7.70 -51.93 -0.40 0.18 16 39 H 0.41 0.37 9.10 45.56 0.41 0.78 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -34.41 342.85 -8.11 -42.53 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.14 Total: -1.93 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.90 Total: -13.85 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.01 Total: -36.33 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.22 Total: -12.62 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.41 -8.11 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714020564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.510 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds