Wall clock time and date at job start Mon Mar 30 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47107 * 240.00198 * 3 2 1 5 5 H 1.48500 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47345 * 120.00416 * 3 2 1 7 7 C 1.37873 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47261 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.46957 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00093 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47436 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.86973 * 59.55787 * 15 14 13 17 17 C 1.54099 * 109.88116 * 180.71820 * 15 14 13 18 18 C 1.54984 * 104.25432 * 121.59324 * 17 15 14 19 19 H 1.09003 * 110.84226 * 262.54019 * 18 17 15 20 20 C 1.50704 * 111.05029 * 138.88613 * 18 17 15 21 21 O 1.20820 * 119.99922 * 5.85480 * 20 18 17 22 22 O 1.34227 * 119.99679 * 185.85801 * 20 18 17 23 23 C 1.54997 * 102.01247 * 20.66679 * 18 17 15 24 24 O 1.43743 * 109.88386 * 298.55068 * 15 14 13 25 25 H 0.97002 * 119.99716 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47161 * 59.99932 * 9 7 2 27 27 H 1.08999 * 109.47004 * 299.99394 * 9 7 2 28 28 H 1.09002 * 109.47699 * 59.99943 * 10 9 7 29 29 H 1.09001 * 109.47115 * 299.99527 * 10 9 7 30 30 H 1.08999 * 109.46861 * 59.99919 * 11 10 9 31 31 H 1.08992 * 109.46898 * 300.00151 * 11 10 9 32 32 H 1.08999 * 109.46933 * 60.00349 * 12 11 10 33 33 H 1.09001 * 109.47473 * 299.99944 * 12 11 10 34 34 H 1.00900 * 111.00185 * 56.04701 * 13 12 11 35 35 H 1.09009 * 109.46843 * 60.00404 * 14 13 12 36 36 H 1.08994 * 109.47169 * 300.00495 * 14 13 12 37 37 H 1.09006 * 110.48596 * 240.13309 * 17 15 14 38 38 H 1.08995 * 110.48837 * 2.64693 * 17 15 14 39 39 H 0.96701 * 116.99637 * 179.97438 * 22 20 18 40 40 H 1.09002 * 110.61957 * 204.59612 * 23 18 17 41 41 H 1.09000 * 110.61969 * 81.75502 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 6 2.4747 -6.1500 -0.0024 13 7 1.7402 -7.4221 -0.0023 14 6 2.6647 -8.5638 -0.0033 15 6 1.8647 -9.8679 -0.0025 16 1 1.2273 -9.9121 -0.8857 17 6 2.8258 -11.0723 0.0146 18 6 2.4364 -11.8531 1.2956 19 1 3.0999 -11.5980 2.1220 20 6 2.4390 -13.3392 1.0454 21 8 2.8236 -13.7727 -0.0147 22 8 2.0138 -14.1812 2.0004 23 6 0.9985 -11.3394 1.5618 24 8 1.0596 -9.9469 1.1857 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8880 28 1 2.8714 -3.6047 0.8890 29 1 2.8726 -3.6039 -0.8910 30 1 0.8542 -5.0447 -0.8922 31 1 0.8534 -5.0449 0.8876 32 1 3.1012 -6.0925 0.8877 33 1 3.1014 -6.0919 -0.8923 34 1 1.1036 -7.4722 -0.7835 35 1 3.2932 -8.5230 0.8864 36 1 3.2921 -8.5225 -0.8936 37 1 2.6749 -11.6934 -0.8683 38 1 3.8605 -10.7339 0.0696 39 1 2.0336 -15.1256 1.7935 40 1 0.7437 -11.4413 2.6168 41 1 0.2790 -11.8734 0.9411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714020564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:36 Heat of formation + Delta-G solvation = -185.215259 kcal Electronic energy + Delta-G solvation = -19980.962127 eV Core-core repulsion = 16665.770860 eV Total energy + Delta-G solvation = -3315.191268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71750 -40.09195 -37.78693 -37.19474 -35.90406 -34.14555 -33.42932 -31.70201 -29.53721 -26.70329 -25.29308 -24.93262 -22.84439 -22.51339 -21.65651 -21.31549 -19.23220 -18.43191 -18.24134 -17.66079 -16.80236 -16.57211 -16.49912 -16.14904 -15.98735 -15.38826 -15.27886 -14.65139 -14.50714 -14.26381 -13.76260 -13.65766 -13.39343 -13.18894 -12.85359 -12.80482 -12.65364 -12.48003 -12.45029 -12.16735 -12.12711 -12.05015 -11.82744 -11.57633 -11.35232 -11.29484 -10.97184 -10.68033 -10.53865 -9.28944 -8.18514 -6.30251 1.07696 1.40141 1.43896 1.51841 1.94820 2.41932 2.88646 3.13801 3.20465 3.23893 3.69135 3.88956 4.02050 4.12037 4.16750 4.20659 4.30897 4.45549 4.55491 4.59725 4.65920 4.71285 4.74959 4.84285 4.86970 4.89316 4.95290 5.07970 5.26885 5.29374 5.37969 5.54072 5.56548 5.79619 5.86522 5.88794 6.14243 6.26936 6.49995 6.87231 6.91333 7.38863 8.93159 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.068624 B = 0.002130 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.921063 B =13140.953606 C =13307.764798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.072 3.928 13 N -0.695 5.695 14 C 0.060 3.940 15 C 0.080 3.920 16 H 0.072 0.928 17 C -0.135 4.135 18 C -0.116 4.116 19 H 0.143 0.857 20 C 0.499 3.501 21 O -0.545 6.545 22 O -0.507 6.507 23 C 0.058 3.942 24 O -0.370 6.370 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.342 0.658 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.430 0.570 40 H 0.119 0.881 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -29.692 2.335 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.056 4.056 13 N -0.327 5.327 14 C -0.069 4.069 15 C 0.022 3.978 16 H 0.090 0.910 17 C -0.173 4.173 18 C -0.136 4.136 19 H 0.160 0.840 20 C 0.343 3.657 21 O -0.436 6.436 22 O -0.321 6.321 23 C -0.019 4.019 24 O -0.289 6.289 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.006 0.994 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.292 0.708 40 H 0.137 0.863 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.909 -29.127 2.935 29.865 hybrid contribution 0.416 0.220 -1.209 1.297 sum 6.325 -28.907 1.726 29.641 Atomic orbital electron populations 1.70107 1.07871 1.27819 1.51690 1.26055 0.95841 1.03570 0.94773 0.85464 0.78230 0.77884 0.79230 1.19076 1.20821 1.19097 1.21723 0.93591 0.92501 1.50512 0.92104 1.19028 0.94550 0.93374 0.94562 1.21399 0.97957 0.93630 1.00491 1.21458 0.98093 0.93474 1.01338 1.21838 0.95178 0.88060 1.00570 1.60362 1.20230 1.01471 1.50602 1.22228 0.94071 0.88724 1.01876 1.22827 0.91680 0.94320 0.88925 0.90972 1.22976 1.01643 0.95353 0.97292 1.22649 1.01909 0.86877 1.02126 0.83971 1.23080 0.71873 0.90200 0.80588 1.90732 1.45540 1.79454 1.27871 1.84502 1.77872 1.24507 1.45223 1.23578 0.92940 0.82223 1.03146 1.89108 1.71406 1.24413 1.43937 0.92788 0.99235 0.99379 0.93077 0.92972 0.92905 0.92949 0.91182 0.94622 0.83961 0.90309 0.92509 0.89269 0.87985 0.70757 0.86278 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 2 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.21 4.97 29.85 0.15 1.35 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.91 16 11 C -0.11 -3.69 5.47 30.59 0.17 -3.52 16 12 C 0.07 1.98 5.69 86.30 0.49 2.47 16 13 N -0.70 -17.04 6.41 -513.90 -3.29 -20.33 16 14 C 0.06 1.12 5.16 86.30 0.45 1.56 16 15 C 0.08 1.35 3.63 30.96 0.11 1.46 16 16 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 17 C -0.13 -1.75 6.04 31.64 0.19 -1.56 16 18 C -0.12 -1.34 3.63 -10.18 -0.04 -1.37 16 19 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 20 C 0.50 6.42 7.64 71.24 0.54 6.96 16 21 O -0.55 -10.62 16.28 21.98 0.36 -10.26 16 22 O -0.51 -3.95 13.41 -51.39 -0.69 -4.64 16 23 C 0.06 0.78 7.15 72.67 0.52 1.29 16 24 O -0.37 -7.58 11.09 -148.98 -1.65 -9.23 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.34 7.93 8.73 -89.69 -0.78 7.14 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.31 6.95 -2.38 -0.02 1.29 16 38 H 0.10 1.09 7.70 -2.39 -0.02 1.07 16 39 H 0.43 -0.07 9.10 -74.06 -0.67 -0.74 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 0.83 8.04 -2.39 -0.02 0.81 16 Total: -1.00 -74.00 342.85 0.03 -73.97 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -0.44 Total: 8.41 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.44 Total: -26.86 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -3.01 Total: -78.49 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.98 Total: -24.12 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.00 0.03 -73.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714020564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.245 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds