Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47415 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.46897 * 110.99645 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46955 * 180.02562 * 14 13 12 16 16 H 1.09005 * 110.45956 * 305.70400 * 15 14 13 17 17 C 1.54512 * 110.51186 * 68.30819 * 15 14 13 18 18 C 1.54474 * 104.06505 * 118.64389 * 17 15 14 19 19 O 1.44430 * 104.80375 * 23.98279 * 18 17 15 20 20 C 1.44647 * 105.36571 * 319.56165 * 19 18 17 21 21 H 1.08997 * 110.34448 * 281.59686 * 20 19 18 22 22 C 1.50701 * 110.50614 * 159.18437 * 20 19 18 23 23 O 1.20818 * 119.99913 * 359.67423 * 22 20 19 24 24 O 1.34230 * 119.99977 * 179.67085 * 22 20 19 25 25 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 27 27 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 28 28 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 29 29 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 30 30 H 1.09002 * 109.47302 * 300.00137 * 11 10 9 31 31 H 1.08998 * 109.46899 * 59.99999 * 11 10 9 32 32 H 1.09002 * 109.46997 * 300.00324 * 12 11 10 33 33 H 1.09000 * 109.46625 * 59.99899 * 12 11 10 34 34 H 1.00903 * 110.99732 * 56.04951 * 13 12 11 35 35 H 1.08998 * 109.47537 * 300.00401 * 14 13 12 36 36 H 1.09000 * 109.47395 * 60.00860 * 14 13 12 37 37 H 1.09004 * 110.51218 * 237.29345 * 17 15 14 38 38 H 1.09001 * 110.50722 * 0.02562 * 17 15 14 39 39 H 1.08997 * 110.37364 * 142.80822 * 18 17 15 40 40 H 1.08999 * 110.37413 * 265.04080 * 18 17 15 41 41 H 0.96693 * 116.99943 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 6 2.4746 -6.1500 0.0011 13 7 1.7401 -7.4222 0.0022 14 6 2.6647 -8.5637 0.0008 15 6 1.8646 -9.8679 0.0014 16 1 1.1583 -9.8813 0.8316 17 6 1.1240 -10.0493 -1.3424 18 6 1.7128 -11.3544 -1.9224 19 8 2.2016 -12.0810 -0.7739 20 6 2.8131 -11.0848 0.0781 21 1 3.8014 -10.8198 -0.2977 22 6 2.9071 -11.5882 1.4954 23 8 2.4916 -12.6877 1.7748 24 8 3.4526 -10.8150 2.4475 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5563 0.8920 27 1 0.6242 -2.5575 -0.8880 28 1 2.8714 -3.6046 -0.8890 29 1 2.8727 -3.6039 0.8909 30 1 0.8541 -5.0447 0.8922 31 1 0.8534 -5.0449 -0.8877 32 1 3.1006 -6.0921 -0.8894 33 1 3.1020 -6.0922 0.8906 34 1 1.1028 -7.4724 -0.7784 35 1 3.2913 -8.5227 -0.8901 36 1 3.2939 -8.5228 0.8899 37 1 0.0518 -10.1547 -1.1765 38 1 1.3282 -9.2101 -2.0074 39 1 0.9377 -11.9269 -2.4318 40 1 2.5302 -11.1302 -2.6078 41 1 3.4912 -11.1811 3.3416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716202151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = -163.067815 kcal Electronic energy + Delta-G solvation = -20373.644492 eV Core-core repulsion = 17059.413609 eV Total energy + Delta-G solvation = -3314.230882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10296 -39.44871 -37.04232 -36.42580 -34.77558 -33.12149 -31.58331 -30.61931 -28.26204 -25.78305 -24.06728 -23.53624 -21.96927 -21.46400 -20.93831 -20.21470 -18.57239 -17.72621 -16.92480 -16.57711 -16.09690 -15.95665 -15.39896 -15.12826 -14.73124 -14.44341 -13.82224 -13.72372 -13.64153 -13.25557 -12.95885 -12.65898 -12.27976 -12.03715 -11.89818 -11.87535 -11.43615 -11.16246 -11.09987 -10.93531 -10.85248 -10.60486 -10.59823 -10.38177 -10.11669 -9.78391 -9.63598 -8.55932 -8.49334 -8.30025 -6.34026 -4.02624 1.74597 2.21171 3.43808 3.47821 3.53528 3.63591 3.74515 4.13275 4.29767 4.48471 4.56397 4.59579 4.62473 4.78371 4.88961 5.06135 5.21227 5.27883 5.29304 5.38222 5.43524 5.46667 5.62533 5.66614 5.77967 6.01582 6.05250 6.10739 6.13593 6.36703 6.66941 6.79307 6.86567 7.05527 7.24885 7.45063 7.48601 7.58424 8.25687 8.49584 8.91654 9.69925 11.06822 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038551 B = 0.002478 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.137496 B =11296.738653 C =11693.246730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.048 0.952 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.060 3.940 13 N -0.689 5.689 14 C 0.066 3.934 15 C -0.106 4.106 16 H 0.099 0.901 17 C -0.152 4.152 18 C 0.044 3.956 19 O -0.347 6.347 20 C 0.089 3.911 21 H 0.110 0.890 22 C 0.486 3.514 23 O -0.497 6.497 24 O -0.508 6.508 25 H 0.269 0.731 26 H 0.007 0.993 27 H 0.005 0.995 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.339 0.661 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -23.697 -1.458 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.140 4.140 11 C -0.155 4.155 12 C -0.068 4.068 13 N -0.320 5.320 14 C -0.064 4.064 15 C -0.125 4.125 16 H 0.117 0.883 17 C -0.190 4.190 18 C -0.032 4.032 19 O -0.266 6.266 20 C 0.029 3.971 21 H 0.128 0.872 22 C 0.327 3.673 23 O -0.383 6.383 24 O -0.321 6.321 25 H 0.079 0.921 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 5.709 -22.440 -1.046 23.178 hybrid contribution 0.570 -1.735 -0.404 1.870 sum 6.278 -24.174 -1.450 25.018 Atomic orbital electron populations 1.70751 1.06894 1.30620 1.46924 1.25867 0.96591 1.02768 0.93877 0.83516 0.74670 0.75135 0.76704 1.21499 1.21511 1.20986 1.22118 0.94286 0.92185 1.55432 0.93388 1.19221 0.94670 0.93194 0.95854 1.21456 0.98809 0.93387 1.00352 1.21657 0.97943 0.93949 1.01940 1.22068 0.96181 0.88214 1.00376 1.60488 1.19755 1.01641 1.50162 1.21968 0.94118 0.88832 1.01484 1.22498 0.97124 0.93013 0.99852 0.88281 1.23063 1.01678 0.98375 0.95903 1.23557 0.98772 0.92568 0.88346 1.89278 1.76583 1.28898 1.31825 1.22382 0.99773 0.88627 0.86276 0.87236 1.22804 0.74001 0.82741 0.87759 1.90753 1.43880 1.21267 1.82403 1.84484 1.75024 1.49922 1.22621 0.92076 0.97502 0.97675 0.93496 0.93213 0.91635 0.92820 0.95402 0.91006 0.84304 0.94820 0.89722 0.89585 0.89787 0.88060 0.91502 0.72390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.60 29.90 -169.99 -5.08 20.52 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.60 -17.46 9.11 -34.44 -0.31 -17.78 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.20 4.28 -27.89 -0.12 0.08 16 10 C -0.10 -2.08 5.15 -26.73 -0.14 -2.22 16 11 C -0.12 -1.91 5.47 -26.73 -0.15 -2.06 16 12 C 0.06 0.79 5.68 -3.82 -0.02 0.76 16 13 N -0.69 -7.57 6.50 -113.78 -0.74 -8.31 16 14 C 0.07 0.57 4.86 -3.82 -0.02 0.55 16 15 C -0.11 -0.85 2.89 -89.05 -0.26 -1.11 16 16 H 0.10 0.93 7.86 -51.93 -0.41 0.52 16 17 C -0.15 -1.02 6.25 -25.16 -0.16 -1.18 16 18 C 0.04 0.30 7.64 37.93 0.29 0.59 16 19 O -0.35 -3.54 10.93 -54.39 -0.59 -4.14 16 20 C 0.09 0.76 3.39 -27.10 -0.09 0.67 16 21 H 0.11 0.72 7.87 -51.93 -0.41 0.32 16 22 C 0.49 4.79 7.57 36.01 0.27 5.06 16 23 O -0.50 -6.68 17.32 -25.25 -0.44 -7.12 16 24 O -0.51 -3.62 13.42 -39.26 -0.53 -4.15 16 25 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 26 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 27 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.34 3.40 7.59 -39.29 -0.30 3.10 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.50 7.11 -51.93 -0.37 0.13 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.42 1.28 9.10 45.56 0.41 1.69 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -35.17 340.87 -8.34 -43.50 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.05 Total: -1.33 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.80 Total: -16.36 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.02 Total: -36.06 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.56 Total: -15.41 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.17 -8.34 -43.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716202151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.564 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds