Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47415 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.46897 * 110.99645 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46955 * 180.02562 * 14 13 12 16 16 H 1.09005 * 110.45956 * 305.70400 * 15 14 13 17 17 C 1.54512 * 110.51186 * 68.30819 * 15 14 13 18 18 C 1.54474 * 104.06505 * 118.64389 * 17 15 14 19 19 O 1.44430 * 104.80375 * 23.98279 * 18 17 15 20 20 C 1.44647 * 105.36571 * 319.56165 * 19 18 17 21 21 H 1.08997 * 110.34448 * 281.59686 * 20 19 18 22 22 C 1.50701 * 110.50614 * 159.18437 * 20 19 18 23 23 O 1.20818 * 119.99913 * 359.67423 * 22 20 19 24 24 O 1.34230 * 119.99977 * 179.67085 * 22 20 19 25 25 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 27 27 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 28 28 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 29 29 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 30 30 H 1.09002 * 109.47302 * 300.00137 * 11 10 9 31 31 H 1.08998 * 109.46899 * 59.99999 * 11 10 9 32 32 H 1.09002 * 109.46997 * 300.00324 * 12 11 10 33 33 H 1.09000 * 109.46625 * 59.99899 * 12 11 10 34 34 H 1.00903 * 110.99732 * 56.04951 * 13 12 11 35 35 H 1.08998 * 109.47537 * 300.00401 * 14 13 12 36 36 H 1.09000 * 109.47395 * 60.00860 * 14 13 12 37 37 H 1.09004 * 110.51218 * 237.29345 * 17 15 14 38 38 H 1.09001 * 110.50722 * 0.02562 * 17 15 14 39 39 H 1.08997 * 110.37364 * 142.80822 * 18 17 15 40 40 H 1.08999 * 110.37413 * 265.04080 * 18 17 15 41 41 H 0.96693 * 116.99943 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 6 2.4746 -6.1500 0.0011 13 7 1.7401 -7.4222 0.0022 14 6 2.6647 -8.5637 0.0008 15 6 1.8646 -9.8679 0.0014 16 1 1.1583 -9.8813 0.8316 17 6 1.1240 -10.0493 -1.3424 18 6 1.7128 -11.3544 -1.9224 19 8 2.2016 -12.0810 -0.7739 20 6 2.8131 -11.0848 0.0781 21 1 3.8014 -10.8198 -0.2977 22 6 2.9071 -11.5882 1.4954 23 8 2.4916 -12.6877 1.7748 24 8 3.4526 -10.8150 2.4475 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5563 0.8920 27 1 0.6242 -2.5575 -0.8880 28 1 2.8714 -3.6046 -0.8890 29 1 2.8727 -3.6039 0.8909 30 1 0.8541 -5.0447 0.8922 31 1 0.8534 -5.0449 -0.8877 32 1 3.1006 -6.0921 -0.8894 33 1 3.1020 -6.0922 0.8906 34 1 1.1028 -7.4724 -0.7784 35 1 3.2913 -8.5227 -0.8901 36 1 3.2939 -8.5228 0.8899 37 1 0.0518 -10.1547 -1.1765 38 1 1.3282 -9.2101 -2.0074 39 1 0.9377 -11.9269 -2.4318 40 1 2.5302 -11.1302 -2.6078 41 1 3.4912 -11.1811 3.3416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716202151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = -188.382121 kcal Electronic energy + Delta-G solvation = -20374.742202 eV Core-core repulsion = 17059.413609 eV Total energy + Delta-G solvation = -3315.328593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79699 -40.12434 -38.04951 -37.19797 -36.36483 -34.62482 -32.88548 -31.21822 -29.75315 -26.97061 -25.45458 -24.41333 -23.20895 -22.40207 -22.02412 -21.36160 -19.26942 -18.87888 -18.41692 -17.56159 -16.97776 -16.57758 -16.24880 -15.95342 -15.70085 -15.64134 -15.52450 -14.86521 -14.71271 -14.49642 -14.00467 -13.84721 -13.67870 -13.10661 -12.74916 -12.66953 -12.59859 -12.50115 -12.32496 -12.17918 -11.94895 -11.93260 -11.75808 -11.62288 -11.44624 -11.41206 -10.98555 -10.61226 -10.54198 -9.39738 -8.69220 -6.39590 1.00416 1.52295 1.61948 1.62602 1.79701 2.57062 2.90452 3.01201 3.15758 3.50114 3.70901 3.83630 3.99904 4.07736 4.10053 4.13043 4.22256 4.30273 4.47111 4.47615 4.57879 4.71248 4.73856 4.79570 4.84577 4.88851 5.00534 5.05886 5.10805 5.13922 5.23506 5.45070 5.50196 5.58694 5.59933 6.01157 6.03245 6.19815 6.44036 6.58663 6.87277 7.43184 8.71750 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038551 B = 0.002478 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.137496 B =11296.738653 C =11693.246730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.621 4.621 8 H 0.051 0.949 9 C 0.006 3.994 10 C -0.091 4.091 11 C -0.107 4.107 12 C 0.072 3.928 13 N -0.697 5.697 14 C 0.070 3.930 15 C -0.098 4.098 16 H 0.082 0.918 17 C -0.149 4.149 18 C 0.041 3.959 19 O -0.377 6.377 20 C 0.088 3.912 21 H 0.134 0.866 22 C 0.490 3.510 23 O -0.541 6.541 24 O -0.500 6.500 25 H 0.255 0.745 26 H -0.015 1.015 27 H -0.013 1.013 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.345 0.655 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -23.700 -2.186 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.942 3.058 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.658 4.658 8 H 0.069 0.931 9 C -0.031 4.031 10 C -0.129 4.129 11 C -0.145 4.145 12 C -0.057 4.057 13 N -0.329 5.329 14 C -0.059 4.059 15 C -0.118 4.118 16 H 0.101 0.899 17 C -0.187 4.187 18 C -0.035 4.035 19 O -0.296 6.296 20 C 0.029 3.971 21 H 0.151 0.849 22 C 0.332 3.668 23 O -0.431 6.431 24 O -0.315 6.315 25 H 0.064 0.936 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 7.355 -22.461 -1.766 23.701 hybrid contribution 0.043 -1.752 -0.146 1.759 sum 7.398 -24.213 -1.912 25.391 Atomic orbital electron populations 1.70892 1.08010 1.29867 1.49029 1.27519 0.96649 1.07079 0.92748 0.82896 0.74180 0.70863 0.77887 1.19626 1.19276 1.20832 1.22590 0.94769 0.93644 1.54841 0.93056 1.19208 0.95257 0.94794 0.93877 1.21288 0.97711 0.93377 1.00557 1.21480 0.98171 0.93341 1.01505 1.21819 0.95133 0.87808 1.00905 1.60393 1.20286 1.01409 1.50831 1.21953 0.93817 0.87939 1.02174 1.22371 0.96760 0.92543 1.00101 0.89924 1.23060 1.01429 0.98904 0.95280 1.23754 0.99690 0.92332 0.87713 1.89258 1.77027 1.30312 1.33029 1.22539 1.00863 0.88263 0.85476 0.84913 1.23153 0.72903 0.82107 0.88616 1.90735 1.46015 1.23179 1.83188 1.84456 1.74098 1.49368 1.23557 0.93551 0.99662 0.99447 0.92969 0.93177 0.92773 0.92631 0.94333 0.91038 0.83585 0.93066 0.90003 0.89760 0.88501 0.87187 0.89689 0.70427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.41 13.65 21.45 0.29 -59.12 16 2 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 3 Si 1.12 50.59 29.90 68.60 2.05 52.64 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.62 -36.07 9.11 25.60 0.23 -35.84 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.01 0.30 4.28 29.85 0.13 0.43 16 10 C -0.09 -3.66 5.15 30.59 0.16 -3.51 16 11 C -0.11 -3.39 5.47 30.59 0.17 -3.22 16 12 C 0.07 1.72 5.68 86.30 0.49 2.21 16 13 N -0.70 -13.73 6.50 -513.89 -3.34 -17.07 16 14 C 0.07 1.04 4.86 86.30 0.42 1.46 16 15 C -0.10 -1.42 2.89 -9.77 -0.03 -1.44 16 16 H 0.08 1.47 7.86 -2.38 -0.02 1.46 16 17 C -0.15 -1.69 6.25 31.61 0.20 -1.49 16 18 C 0.04 0.47 7.64 72.48 0.55 1.02 16 19 O -0.38 -7.27 10.93 -130.66 -1.43 -8.70 16 20 C 0.09 1.37 3.39 30.35 0.10 1.47 16 21 H 0.13 1.41 7.87 -2.39 -0.02 1.39 16 22 C 0.49 9.29 7.57 71.24 0.54 9.83 16 23 O -0.54 -14.69 17.32 28.21 0.49 -14.20 16 24 O -0.50 -6.48 13.42 -51.42 -0.69 -7.17 16 25 H 0.26 16.31 7.22 -92.71 -0.67 15.65 16 26 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 27 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.35 6.10 7.59 -89.69 -0.68 5.42 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 0.86 7.11 -2.39 -0.02 0.84 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.43 2.15 9.10 -74.06 -0.67 1.47 16 Total: -1.00 -76.30 340.87 0.56 -75.74 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -0.23 Total: 9.01 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.42 Total: -31.15 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -3.05 Total: -76.18 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.63 Total: -30.07 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -76.30 0.56 -75.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716202151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.641 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds