Wall clock time and date at job start Mon Mar 30 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00226 * 2 1 4 4 H 1.48496 * 109.47149 * 269.99900 * 3 2 1 5 5 H 1.48503 * 109.46984 * 30.00078 * 3 2 1 6 6 H 1.48496 * 109.47118 * 149.99706 * 3 2 1 7 7 C 1.37874 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99976 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46827 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46827 * 180.02562 * 11 10 9 13 13 N 1.46909 * 109.46725 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99755 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47036 * 179.97438 * 14 13 12 16 16 H 1.09001 * 110.45622 * 52.39415 * 15 14 13 17 17 C 1.54507 * 110.62907 * 289.70656 * 15 14 13 18 18 C 1.54477 * 104.06510 * 241.29811 * 17 15 14 19 19 O 1.44688 * 104.83958 * 23.98057 * 18 17 15 20 20 C 1.44428 * 105.13885 * 319.51776 * 19 18 17 21 21 H 1.09002 * 110.37130 * 281.60836 * 20 19 18 22 22 C 1.50699 * 110.37357 * 159.38249 * 20 19 18 23 23 O 1.20823 * 120.00244 * 357.95032 * 22 20 19 24 24 O 1.34230 * 119.99837 * 177.95084 * 22 20 19 25 25 H 0.97001 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47571 * 59.99825 * 9 7 2 27 27 H 1.09004 * 109.47198 * 299.99996 * 9 7 2 28 28 H 1.08995 * 109.46902 * 59.99938 * 10 9 7 29 29 H 1.08995 * 109.47080 * 299.99345 * 10 9 7 30 30 H 1.09001 * 109.47326 * 59.99558 * 11 10 9 31 31 H 1.09004 * 109.47301 * 299.99833 * 11 10 9 32 32 H 1.08995 * 109.46902 * 59.99954 * 12 11 10 33 33 H 1.08995 * 109.47080 * 299.99362 * 12 11 10 34 34 H 1.00897 * 111.00072 * 303.95168 * 13 12 11 35 35 H 1.09002 * 109.47517 * 59.99554 * 14 13 12 36 36 H 1.09007 * 109.46997 * 300.00195 * 14 13 12 37 37 H 1.09000 * 110.50930 * 359.94750 * 17 15 14 38 38 H 1.09006 * 110.50971 * 122.65287 * 17 15 14 39 39 H 1.08996 * 110.37125 * 142.80919 * 18 17 15 40 40 H 1.08999 * 110.37544 * 265.03608 * 18 17 15 41 41 H 0.96703 * 116.99996 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 6 6.0613 -4.0793 0.0002 13 7 7.5304 -4.0793 -0.0005 14 6 8.0568 -5.4508 -0.0006 15 6 9.5862 -5.4100 -0.0020 16 1 9.9511 -4.7766 0.8066 17 6 10.1162 -4.9084 -1.3639 18 6 10.9533 -6.0910 -1.8996 19 8 10.4143 -7.2576 -1.2349 20 6 10.1658 -6.8364 0.1240 21 1 11.0959 -6.8192 0.6921 22 6 9.1668 -7.7523 0.7829 23 8 8.6728 -8.6590 0.1553 24 8 8.8257 -7.5609 2.0669 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8910 27 1 3.8752 -0.6805 -0.8889 28 1 3.6583 -3.1503 -0.8892 29 1 3.6578 -3.1507 0.8907 30 1 5.9148 -2.1229 0.8909 31 1 5.9147 -2.1229 -0.8891 32 1 5.6979 -4.5926 -0.8900 33 1 5.6981 -4.5935 0.8899 34 1 7.8916 -3.5530 -0.7818 35 1 7.7068 -5.9742 -0.8904 36 1 7.7076 -5.9740 0.8896 37 1 9.2885 -4.6896 -2.0386 38 1 10.7431 -4.0270 -1.2286 39 1 10.8348 -6.1813 -2.9794 40 1 12.0045 -5.9585 -1.6437 41 1 8.1812 -8.1741 2.4461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716202159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:20 Heat of formation + Delta-G solvation = -153.036077 kcal Electronic energy + Delta-G solvation = -20651.335280 eV Core-core repulsion = 17337.539406 eV Total energy + Delta-G solvation = -3313.795874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22779 -39.36270 -36.99218 -36.39891 -34.65155 -32.90305 -31.71596 -30.65973 -28.83991 -26.04982 -24.24832 -23.54090 -22.07274 -21.34057 -20.66173 -19.98963 -18.31449 -17.48556 -17.25324 -16.63351 -16.33110 -15.82183 -15.51254 -15.06430 -14.71585 -14.41077 -14.19542 -13.64710 -13.56302 -13.33920 -12.73923 -12.51315 -12.26426 -12.01092 -11.91338 -11.80743 -11.72041 -11.37450 -11.18269 -11.10424 -10.81617 -10.76850 -10.57760 -10.33557 -9.87530 -9.67576 -9.48121 -9.13993 -8.55655 -8.51273 -6.02015 -3.99698 1.78387 2.24114 3.32178 3.39390 3.43934 3.51838 3.77257 4.09493 4.30861 4.47480 4.48281 4.59184 4.65097 4.78647 4.99894 5.00732 5.22778 5.24463 5.31727 5.34175 5.35770 5.46886 5.56786 5.64254 5.78816 6.01693 6.08359 6.09180 6.15750 6.35944 6.65387 6.75472 6.84041 7.02008 7.25111 7.35102 7.48238 7.50953 7.83022 8.57232 9.03309 9.60865 11.11675 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.002829 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.109847 B = 9896.601242 C =10382.699853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.058 3.942 13 N -0.686 5.686 14 C 0.056 3.944 15 C -0.106 4.106 16 H 0.111 0.889 17 C -0.152 4.152 18 C 0.043 3.957 19 O -0.348 6.348 20 C 0.088 3.912 21 H 0.112 0.888 22 C 0.486 3.514 23 O -0.494 6.494 24 O -0.510 6.510 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.009 0.991 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.339 0.661 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.676 -12.578 0.406 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.155 4.155 12 C -0.070 4.070 13 N -0.317 5.317 14 C -0.074 4.074 15 C -0.125 4.125 16 H 0.129 0.871 17 C -0.190 4.190 18 C -0.033 4.033 19 O -0.266 6.266 20 C 0.029 3.971 21 H 0.129 0.871 22 C 0.326 3.674 23 O -0.380 6.380 24 O -0.324 6.324 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 25.662 -12.599 0.645 28.596 hybrid contribution -0.287 0.383 -0.649 0.806 sum 25.376 -12.216 -0.004 28.163 Atomic orbital electron populations 1.69926 1.06328 1.26833 1.51421 1.25057 0.94745 0.99241 0.94635 0.86748 0.80383 0.83540 0.78442 1.20371 1.21433 1.18953 1.21195 0.89710 0.94412 1.50507 0.91142 1.19567 0.96952 0.92436 0.96141 1.21421 0.91745 0.99842 1.00986 1.21669 0.97577 0.94338 1.01949 1.22080 0.85777 0.98687 1.00502 1.60525 1.08813 1.12431 1.49907 1.22149 0.92492 0.91427 1.01296 1.22551 0.96614 0.93728 0.99626 0.87117 1.23077 1.00828 0.99132 0.95967 1.23597 0.97203 0.83882 0.98612 1.89313 1.84112 1.33276 1.19927 1.22421 0.96725 0.91664 0.86336 0.87097 1.22771 0.81142 0.83362 0.80093 1.90769 1.51664 1.31333 1.64240 1.84506 1.61258 1.59326 1.27262 0.92796 0.96620 0.97224 0.93062 0.92774 0.91546 0.92744 0.95319 0.91039 0.84332 0.94668 0.90313 0.90128 0.89232 0.88183 0.91356 0.72404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.12 -1.85 5.47 -26.73 -0.15 -2.00 16 12 C 0.06 0.79 5.69 -3.82 -0.02 0.76 16 13 N -0.69 -7.76 6.50 -113.77 -0.74 -8.50 16 14 C 0.06 0.57 4.18 -3.83 -0.02 0.56 16 15 C -0.11 -0.81 3.25 -89.05 -0.29 -1.10 16 16 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.15 -0.94 6.26 -25.17 -0.16 -1.10 16 18 C 0.04 0.28 7.63 37.93 0.29 0.57 16 19 O -0.35 -3.52 10.93 -54.49 -0.60 -4.11 16 20 C 0.09 0.73 3.73 -27.11 -0.10 0.63 16 21 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 22 C 0.49 4.86 5.84 36.01 0.21 5.07 16 23 O -0.49 -6.82 17.31 -25.28 -0.44 -7.26 16 24 O -0.51 -3.72 12.40 -39.26 -0.49 -4.20 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 27 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.34 3.44 7.76 -39.29 -0.30 3.14 16 35 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.08 0.85 5.98 -51.93 -0.31 0.54 16 37 H 0.08 0.55 7.23 -51.93 -0.38 0.18 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.42 1.47 9.10 45.56 0.41 1.89 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -35.22 334.54 -8.03 -43.25 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.00 Total: -1.03 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.91 Total: -12.91 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.03 Total: -36.13 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.52 Total: -15.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.22 -8.03 -43.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716202159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.785 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds