Wall clock time and date at job start Mon Mar 30 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00226 * 2 1 4 4 H 1.48496 * 109.47149 * 269.99900 * 3 2 1 5 5 H 1.48503 * 109.46984 * 30.00078 * 3 2 1 6 6 H 1.48496 * 109.47118 * 149.99706 * 3 2 1 7 7 C 1.37874 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99976 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46827 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46827 * 180.02562 * 11 10 9 13 13 N 1.46909 * 109.46725 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99755 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47036 * 179.97438 * 14 13 12 16 16 H 1.09001 * 110.45622 * 52.39415 * 15 14 13 17 17 C 1.54507 * 110.62907 * 289.70656 * 15 14 13 18 18 C 1.54477 * 104.06510 * 241.29811 * 17 15 14 19 19 O 1.44688 * 104.83958 * 23.98057 * 18 17 15 20 20 C 1.44428 * 105.13885 * 319.51776 * 19 18 17 21 21 H 1.09002 * 110.37130 * 281.60836 * 20 19 18 22 22 C 1.50699 * 110.37357 * 159.38249 * 20 19 18 23 23 O 1.20823 * 120.00244 * 357.95032 * 22 20 19 24 24 O 1.34230 * 119.99837 * 177.95084 * 22 20 19 25 25 H 0.97001 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47571 * 59.99825 * 9 7 2 27 27 H 1.09004 * 109.47198 * 299.99996 * 9 7 2 28 28 H 1.08995 * 109.46902 * 59.99938 * 10 9 7 29 29 H 1.08995 * 109.47080 * 299.99345 * 10 9 7 30 30 H 1.09001 * 109.47326 * 59.99558 * 11 10 9 31 31 H 1.09004 * 109.47301 * 299.99833 * 11 10 9 32 32 H 1.08995 * 109.46902 * 59.99954 * 12 11 10 33 33 H 1.08995 * 109.47080 * 299.99362 * 12 11 10 34 34 H 1.00897 * 111.00072 * 303.95168 * 13 12 11 35 35 H 1.09002 * 109.47517 * 59.99554 * 14 13 12 36 36 H 1.09007 * 109.46997 * 300.00195 * 14 13 12 37 37 H 1.09000 * 110.50930 * 359.94750 * 17 15 14 38 38 H 1.09006 * 110.50971 * 122.65287 * 17 15 14 39 39 H 1.08996 * 110.37125 * 142.80919 * 18 17 15 40 40 H 1.08999 * 110.37544 * 265.03608 * 18 17 15 41 41 H 0.96703 * 116.99996 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 6 6.0613 -4.0793 0.0002 13 7 7.5304 -4.0793 -0.0005 14 6 8.0568 -5.4508 -0.0006 15 6 9.5862 -5.4100 -0.0020 16 1 9.9511 -4.7766 0.8066 17 6 10.1162 -4.9084 -1.3639 18 6 10.9533 -6.0910 -1.8996 19 8 10.4143 -7.2576 -1.2349 20 6 10.1658 -6.8364 0.1240 21 1 11.0959 -6.8192 0.6921 22 6 9.1668 -7.7523 0.7829 23 8 8.6728 -8.6590 0.1553 24 8 8.8257 -7.5609 2.0669 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8910 27 1 3.8752 -0.6805 -0.8889 28 1 3.6583 -3.1503 -0.8892 29 1 3.6578 -3.1507 0.8907 30 1 5.9148 -2.1229 0.8909 31 1 5.9147 -2.1229 -0.8891 32 1 5.6979 -4.5926 -0.8900 33 1 5.6981 -4.5935 0.8899 34 1 7.8916 -3.5530 -0.7818 35 1 7.7068 -5.9742 -0.8904 36 1 7.7076 -5.9740 0.8896 37 1 9.2885 -4.6896 -2.0386 38 1 10.7431 -4.0270 -1.2286 39 1 10.8348 -6.1813 -2.9794 40 1 12.0045 -5.9585 -1.6437 41 1 8.1812 -8.1741 2.4461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716202159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:19 Heat of formation + Delta-G solvation = -179.403151 kcal Electronic energy + Delta-G solvation = -20652.478642 eV Core-core repulsion = 17337.539406 eV Total energy + Delta-G solvation = -3314.939236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91291 -40.02104 -38.02258 -37.17270 -36.11984 -34.50860 -33.08298 -31.24014 -30.34074 -27.25740 -25.37508 -24.46341 -22.85071 -22.51942 -21.83412 -21.23063 -19.05589 -18.85053 -18.15094 -17.89121 -17.22274 -16.56796 -16.38259 -16.16397 -15.89696 -15.62903 -15.39478 -14.78391 -14.66065 -14.29552 -14.09609 -13.80148 -13.60756 -13.25477 -12.94554 -12.79111 -12.60762 -12.45038 -12.29806 -12.17548 -11.98343 -11.86093 -11.74083 -11.51594 -11.37845 -11.32005 -11.18487 -10.88348 -10.76318 -9.50106 -8.29670 -6.34292 1.04300 1.36523 1.39081 1.51729 1.66795 2.37209 2.85813 3.05750 3.08069 3.48372 3.72212 3.84658 4.03196 4.10980 4.13346 4.17505 4.22803 4.34827 4.45237 4.48760 4.59022 4.63818 4.72756 4.82887 4.85105 4.90629 5.00143 5.09401 5.13389 5.18355 5.24897 5.47829 5.56542 5.64835 5.65851 5.68419 5.91838 6.28977 6.39946 6.74331 6.87844 7.30694 8.87551 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.002829 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.109847 B = 9896.601242 C =10382.699853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.027 0.973 9 C -0.011 4.011 10 C -0.097 4.097 11 C -0.104 4.104 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.058 3.942 15 C -0.099 4.099 16 H 0.127 0.873 17 C -0.148 4.148 18 C 0.039 3.961 19 O -0.382 6.382 20 C 0.086 3.914 21 H 0.143 0.857 22 C 0.487 3.513 23 O -0.543 6.543 24 O -0.502 6.502 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.348 0.652 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.904 -10.981 0.686 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.049 4.049 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.064 4.064 13 N -0.311 5.311 14 C -0.071 4.071 15 C -0.118 4.118 16 H 0.145 0.855 17 C -0.185 4.185 18 C -0.036 4.036 19 O -0.302 6.302 20 C 0.026 3.974 21 H 0.160 0.840 22 C 0.330 3.670 23 O -0.432 6.432 24 O -0.317 6.317 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.167 0.833 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 28.912 -11.010 0.944 30.952 hybrid contribution -1.382 -0.205 -0.705 1.565 sum 27.530 -11.214 0.239 29.727 Atomic orbital electron populations 1.70089 1.08469 1.28230 1.52809 1.26126 0.95694 1.03894 0.94029 0.85559 0.79515 0.77689 0.79284 1.19031 1.20986 1.16672 1.21589 0.92560 0.92985 1.50376 0.95471 1.19534 0.93473 0.95301 0.96560 1.21307 0.94920 0.97006 1.00300 1.21474 0.94123 0.95935 1.02632 1.21887 0.87377 0.97034 1.00132 1.60474 1.07164 1.13125 1.50356 1.22132 0.94580 0.90399 0.99998 1.22533 0.94355 0.93765 1.01188 0.85455 1.23090 1.00854 0.99927 0.94675 1.23814 0.98391 0.82760 0.98680 1.89288 1.84630 1.35253 1.21003 1.22686 0.97462 0.91150 0.86059 0.83958 1.23276 0.80657 0.82762 0.80347 1.90748 1.53573 1.33512 1.65407 1.84481 1.61495 1.59587 1.26112 0.92498 0.96068 0.96239 0.93839 0.93599 0.91212 0.91589 0.95836 0.91514 0.83283 0.96666 0.91086 0.91080 0.86758 0.87915 0.88913 0.70689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 -0.08 5.47 84.65 0.46 0.39 16 3 Si 0.96 44.68 27.47 68.60 1.88 46.56 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.54 -31.90 9.66 25.60 0.25 -31.65 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.10 -3.80 5.15 30.60 0.16 -3.64 16 11 C -0.10 -3.06 5.47 30.60 0.17 -2.89 16 12 C 0.06 1.66 5.69 86.30 0.49 2.15 16 13 N -0.68 -13.88 6.50 -513.87 -3.34 -17.22 16 14 C 0.06 1.12 4.18 86.30 0.36 1.48 16 15 C -0.10 -1.28 3.25 -9.78 -0.03 -1.31 16 16 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 17 C -0.15 -1.42 6.26 31.61 0.20 -1.22 16 18 C 0.04 0.41 7.63 72.48 0.55 0.96 16 19 O -0.38 -7.30 10.93 -130.57 -1.43 -8.73 16 20 C 0.09 1.26 3.73 30.35 0.11 1.37 16 21 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 22 C 0.49 9.41 5.84 71.24 0.42 9.83 16 23 O -0.54 -15.31 17.31 28.22 0.49 -14.82 16 24 O -0.50 -6.69 12.40 -51.42 -0.64 -7.33 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.35 6.11 7.76 -89.70 -0.70 5.42 16 35 H 0.02 0.35 8.12 -2.39 -0.02 0.33 16 36 H 0.07 1.46 5.98 -2.38 -0.01 1.45 16 37 H 0.07 0.83 7.23 -2.39 -0.02 0.81 16 38 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.43 2.70 9.10 -74.06 -0.67 2.02 16 Total: -1.00 -77.99 334.54 0.12 -77.86 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -0.40 Total: 9.56 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.26 Total: -24.94 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.04 Total: -78.17 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.58 Total: -30.87 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -77.99 0.12 -77.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716202159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.539 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds