Wall clock time and date at job start Mon Mar 30 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47262 * 270.00081 * 3 2 1 5 5 H 1.48494 * 109.47316 * 30.00343 * 3 2 1 6 6 H 1.48507 * 109.47167 * 150.00399 * 3 2 1 7 7 C 1.37874 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00562 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99775 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47319 * 184.89924 * 9 7 2 11 11 C 1.42903 * 114.00262 * 184.88539 * 10 9 7 12 12 C 1.53000 * 109.47190 * 184.88937 * 11 10 9 13 13 N 1.46900 * 109.47381 * 64.54364 * 12 11 10 14 14 C 1.46901 * 110.99429 * 71.36427 * 13 12 11 15 15 C 1.53006 * 109.46965 * 190.00034 * 14 13 12 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 14 13 17 17 O 1.20827 * 120.00071 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00206 * 180.02562 * 16 15 14 19 19 C 1.46892 * 111.00262 * 195.31820 * 13 12 11 20 20 C 1.53007 * 109.47036 * 68.81394 * 19 13 12 21 21 C 1.52998 * 117.49651 * 243.18633 * 20 19 13 22 22 C 1.52997 * 117.49737 * 174.56120 * 20 19 13 23 23 H 0.96998 * 119.99850 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47167 * 64.90233 * 9 7 2 25 25 H 1.09000 * 109.47457 * 304.90285 * 9 7 2 26 26 H 1.09005 * 109.46948 * 64.88969 * 11 10 9 27 27 H 1.09001 * 109.46982 * 304.88982 * 11 10 9 28 28 H 1.09004 * 109.46854 * 304.54788 * 12 11 10 29 29 H 1.08997 * 109.47095 * 184.54542 * 12 11 10 30 30 H 1.09001 * 109.47597 * 309.99882 * 14 13 12 31 31 H 1.08996 * 109.46986 * 70.00585 * 14 13 12 32 32 H 1.09001 * 109.46839 * 300.00312 * 15 14 13 33 33 H 1.09005 * 109.46687 * 60.00427 * 15 14 13 34 34 H 0.96703 * 117.00231 * 180.02562 * 18 16 15 35 35 H 1.09005 * 109.47050 * 188.81307 * 19 13 12 36 36 H 1.09000 * 109.47457 * 308.81717 * 19 13 12 37 37 H 1.09000 * 115.54552 * 28.89297 * 20 19 13 38 38 H 1.08989 * 117.50296 * 359.97438 * 21 20 19 39 39 H 1.08998 * 117.49588 * 145.02261 * 21 20 19 40 40 H 1.09004 * 117.49886 * 214.97792 * 22 20 19 41 41 H 1.09000 * 117.50088 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1754 -3.5828 0.1139 11 6 1.5723 -4.8744 0.0129 12 6 2.6279 -5.9517 0.2698 13 7 3.1100 -5.8448 1.6533 14 6 2.0820 -6.2875 2.6047 15 6 2.5173 -5.9323 4.0279 16 6 1.4630 -6.3870 5.0039 17 8 0.4660 -6.9390 4.6026 18 8 1.6315 -6.1788 6.3192 19 6 4.3567 -6.5998 1.8362 20 6 5.4866 -5.9128 1.0666 21 6 6.1392 -6.6931 -0.0763 22 6 6.8994 -6.4758 1.2337 23 1 -0.4850 0.8400 0.0004 24 1 0.6916 -2.5956 -0.9310 25 1 0.5605 -2.5200 0.8425 26 1 1.1565 -5.0041 -0.9864 27 1 0.7760 -4.9623 0.7520 28 1 3.4626 -5.8138 -0.4175 29 1 2.1875 -6.9365 0.1137 30 1 1.1390 -5.7900 2.3784 31 1 1.9522 -7.3667 2.5232 32 1 3.4603 -6.4298 4.2542 33 1 2.6471 -4.8530 4.1093 34 1 0.9283 -6.4884 6.9063 35 1 4.6081 -6.6349 2.8963 36 1 4.2256 -7.6144 1.4601 37 1 5.3856 -4.8341 0.9467 38 1 5.7640 -7.6959 -0.2796 39 1 6.4677 -6.1278 -0.9484 40 1 7.7280 -5.7676 1.2233 41 1 7.0239 -7.3360 1.8916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717142730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:08 Heat of formation + Delta-G solvation = -115.050908 kcal Electronic energy + Delta-G solvation = -21101.930018 eV Core-core repulsion = 17789.781305 eV Total energy + Delta-G solvation = -3312.148713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35764 -38.66199 -36.77730 -36.30281 -35.64520 -32.70347 -31.66558 -29.33132 -26.99475 -26.13744 -23.67543 -22.36433 -22.22516 -21.32010 -20.77078 -19.92870 -18.18594 -16.84112 -16.45541 -16.28683 -15.92475 -15.56337 -14.92758 -14.83051 -14.60248 -14.19117 -13.80292 -13.58375 -13.20556 -12.92832 -12.81646 -12.23547 -11.79600 -11.69478 -11.62953 -11.54684 -11.33789 -11.21003 -11.02027 -10.81735 -10.69303 -10.64682 -10.40888 -10.17397 -9.94669 -9.79668 -9.03779 -8.71999 -8.15223 -8.05635 -6.05031 -4.05969 2.13206 2.88596 3.33603 3.38570 3.44233 3.78375 4.04050 4.39982 4.67594 4.80262 4.90152 4.91312 5.00397 5.07572 5.28429 5.31594 5.35690 5.40312 5.54338 5.60281 5.60851 5.73232 5.74677 5.85966 5.92469 5.95909 6.07311 6.10648 6.19379 6.33331 6.39415 6.45897 7.15842 7.21452 7.22820 7.52015 7.79586 7.86462 8.23811 8.69538 9.08950 9.58725 11.06594 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.005066 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.224301 B = 5525.502282 C = 6917.138989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.063 3.937 13 N -0.521 5.521 14 C 0.065 3.935 15 C -0.113 4.113 16 C 0.482 3.518 17 O -0.519 6.519 18 O -0.518 6.518 19 C 0.083 3.917 20 C -0.141 4.141 21 C -0.185 4.185 22 C -0.181 4.181 23 H 0.263 0.737 24 H -0.002 1.002 25 H 0.006 0.994 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.408 0.592 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -16.032 7.239 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.012 4.012 12 C -0.064 4.064 13 N -0.245 5.245 14 C -0.063 4.063 15 C -0.150 4.150 16 C 0.324 3.676 17 O -0.407 6.407 18 O -0.330 6.330 19 C -0.045 4.045 20 C -0.159 4.159 21 C -0.222 4.222 22 C -0.219 4.219 23 H 0.072 0.928 24 H 0.015 0.985 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.267 0.733 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.342 -15.397 6.980 18.851 hybrid contribution -0.676 -0.170 0.181 0.720 sum 7.666 -15.567 7.160 18.771 Atomic orbital electron populations 1.69970 1.06098 1.27003 1.50886 1.24945 0.94935 0.99367 0.95314 0.86369 0.79714 0.82441 0.78150 1.20560 1.21164 1.19622 1.21056 0.94014 0.89380 1.50274 0.91589 1.20163 0.88982 0.83958 0.94911 1.87925 1.35746 1.12283 1.93879 1.22263 0.94304 0.86312 0.98345 1.22154 0.99166 0.96028 0.89095 1.61766 1.03176 1.55438 1.04105 1.21884 0.96261 0.98466 0.89652 1.21381 0.96257 1.05676 0.91727 1.23562 0.87124 0.75006 0.81860 1.90727 1.30557 1.40092 1.79318 1.84550 1.52250 1.77065 1.19130 1.21740 0.89179 0.93758 0.99804 1.22357 0.92100 1.00836 1.00614 1.23037 1.05037 1.01311 0.92849 1.22926 0.95378 1.03232 1.00357 0.92770 0.98456 0.97586 0.94386 0.94605 0.89487 0.94274 0.89185 0.94343 0.87796 0.86009 0.73336 0.90513 0.95083 0.85987 0.89333 0.88834 0.88838 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -15.13 9.43 -34.44 -0.32 -15.45 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.41 5.69 36.01 0.20 5.61 16 10 O -0.38 -9.16 10.27 -35.23 -0.36 -9.52 16 11 C 0.07 1.24 6.08 37.16 0.23 1.47 16 12 C 0.06 0.94 5.22 -3.82 -0.02 0.92 16 13 N -0.52 -7.42 4.39 -234.62 -1.03 -8.45 16 14 C 0.07 0.87 4.10 -3.82 -0.02 0.86 16 15 C -0.11 -1.29 5.77 -27.88 -0.16 -1.45 16 16 C 0.48 5.80 8.33 36.00 0.30 6.10 16 17 O -0.52 -7.83 16.74 -18.75 -0.31 -8.14 16 18 O -0.52 -4.91 13.42 -39.25 -0.53 -5.43 16 19 C 0.08 0.96 5.11 -3.82 -0.02 0.94 16 20 C -0.14 -1.69 4.80 -90.62 -0.43 -2.12 16 21 C -0.19 -1.95 10.06 -26.73 -0.27 -2.22 16 22 C -0.18 -1.79 10.25 -26.73 -0.27 -2.06 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 24 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.68 6.42 -51.93 -0.33 0.34 16 28 H 0.09 1.31 6.94 -51.93 -0.36 0.95 16 29 H 0.04 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.09 1.40 6.26 -51.93 -0.33 1.08 16 31 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.10 0.95 6.32 -51.93 -0.33 0.62 16 33 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.41 2.14 9.10 45.56 0.41 2.55 16 35 H 0.08 0.78 6.01 -51.93 -0.31 0.47 16 36 H 0.03 0.33 7.82 -51.93 -0.41 -0.07 16 37 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.09 0.85 8.03 -51.94 -0.42 0.44 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -33.97 343.56 -8.06 -42.03 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.83 Total: -0.23 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.89 Total: -5.89 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.29 Total: -35.02 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.20 Total: -23.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.97 -8.06 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717142730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.026 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds