Wall clock time and date at job start Mon Mar 30 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47262 * 270.00081 * 3 2 1 5 5 H 1.48494 * 109.47316 * 30.00343 * 3 2 1 6 6 H 1.48507 * 109.47167 * 150.00399 * 3 2 1 7 7 C 1.37874 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00562 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99775 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47319 * 184.89924 * 9 7 2 11 11 C 1.42903 * 114.00262 * 184.88539 * 10 9 7 12 12 C 1.53000 * 109.47190 * 184.88937 * 11 10 9 13 13 N 1.46900 * 109.47381 * 64.54364 * 12 11 10 14 14 C 1.46901 * 110.99429 * 71.36427 * 13 12 11 15 15 C 1.53006 * 109.46965 * 190.00034 * 14 13 12 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 14 13 17 17 O 1.20827 * 120.00071 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00206 * 180.02562 * 16 15 14 19 19 C 1.46892 * 111.00262 * 195.31820 * 13 12 11 20 20 C 1.53007 * 109.47036 * 68.81394 * 19 13 12 21 21 C 1.52998 * 117.49651 * 243.18633 * 20 19 13 22 22 C 1.52997 * 117.49737 * 174.56120 * 20 19 13 23 23 H 0.96998 * 119.99850 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47167 * 64.90233 * 9 7 2 25 25 H 1.09000 * 109.47457 * 304.90285 * 9 7 2 26 26 H 1.09005 * 109.46948 * 64.88969 * 11 10 9 27 27 H 1.09001 * 109.46982 * 304.88982 * 11 10 9 28 28 H 1.09004 * 109.46854 * 304.54788 * 12 11 10 29 29 H 1.08997 * 109.47095 * 184.54542 * 12 11 10 30 30 H 1.09001 * 109.47597 * 309.99882 * 14 13 12 31 31 H 1.08996 * 109.46986 * 70.00585 * 14 13 12 32 32 H 1.09001 * 109.46839 * 300.00312 * 15 14 13 33 33 H 1.09005 * 109.46687 * 60.00427 * 15 14 13 34 34 H 0.96703 * 117.00231 * 180.02562 * 18 16 15 35 35 H 1.09005 * 109.47050 * 188.81307 * 19 13 12 36 36 H 1.09000 * 109.47457 * 308.81717 * 19 13 12 37 37 H 1.09000 * 115.54552 * 28.89297 * 20 19 13 38 38 H 1.08989 * 117.50296 * 359.97438 * 21 20 19 39 39 H 1.08998 * 117.49588 * 145.02261 * 21 20 19 40 40 H 1.09004 * 117.49886 * 214.97792 * 22 20 19 41 41 H 1.09000 * 117.50088 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1754 -3.5828 0.1139 11 6 1.5723 -4.8744 0.0129 12 6 2.6279 -5.9517 0.2698 13 7 3.1100 -5.8448 1.6533 14 6 2.0820 -6.2875 2.6047 15 6 2.5173 -5.9323 4.0279 16 6 1.4630 -6.3870 5.0039 17 8 0.4660 -6.9390 4.6026 18 8 1.6315 -6.1788 6.3192 19 6 4.3567 -6.5998 1.8362 20 6 5.4866 -5.9128 1.0666 21 6 6.1392 -6.6931 -0.0763 22 6 6.8994 -6.4758 1.2337 23 1 -0.4850 0.8400 0.0004 24 1 0.6916 -2.5956 -0.9310 25 1 0.5605 -2.5200 0.8425 26 1 1.1565 -5.0041 -0.9864 27 1 0.7760 -4.9623 0.7520 28 1 3.4626 -5.8138 -0.4175 29 1 2.1875 -6.9365 0.1137 30 1 1.1390 -5.7900 2.3784 31 1 1.9522 -7.3667 2.5232 32 1 3.4603 -6.4298 4.2542 33 1 2.6471 -4.8530 4.1093 34 1 0.9283 -6.4884 6.9063 35 1 4.6081 -6.6349 2.8963 36 1 4.2256 -7.6144 1.4601 37 1 5.3856 -4.8341 0.9467 38 1 5.7640 -7.6959 -0.2796 39 1 6.4677 -6.1278 -0.9484 40 1 7.7280 -5.7676 1.2233 41 1 7.0239 -7.3360 1.8916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717142730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:07 Heat of formation + Delta-G solvation = -139.138966 kcal Electronic energy + Delta-G solvation = -21102.974555 eV Core-core repulsion = 17789.781305 eV Total energy + Delta-G solvation = -3313.193250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31379 -39.74403 -38.29448 -37.28340 -36.81172 -34.89104 -32.81091 -30.72657 -28.94196 -27.26764 -24.89968 -24.39236 -23.15436 -22.48224 -21.71724 -20.94924 -19.11865 -18.60365 -17.79606 -17.45715 -17.35831 -16.96025 -16.38969 -16.22711 -15.76365 -15.69202 -15.13142 -14.75798 -14.54357 -14.14114 -13.96147 -13.56332 -13.45487 -13.06916 -12.89978 -12.74824 -12.57197 -12.47771 -12.36518 -12.29145 -12.12895 -12.04047 -11.70055 -11.63826 -11.24218 -11.08002 -10.83055 -10.67412 -10.14115 -9.20172 -8.29610 -6.41591 1.18720 1.40563 1.43656 1.55872 2.02965 2.36544 2.90141 3.03604 3.08558 3.27635 3.72036 3.90575 3.98170 4.12930 4.18562 4.22648 4.29001 4.40653 4.47681 4.54835 4.57766 4.64863 4.76709 4.84236 4.85209 4.85701 4.94349 4.97786 5.03054 5.11120 5.21326 5.33694 5.46626 5.57922 5.60394 5.99808 6.08155 6.21553 6.59833 6.88765 6.98479 7.30685 8.82854 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.005066 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.224301 B = 5525.502282 C = 6917.138989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.210 3.790 10 O -0.389 6.389 11 C 0.057 3.943 12 C 0.073 3.927 13 N -0.542 5.542 14 C 0.069 3.931 15 C -0.108 4.108 16 C 0.489 3.511 17 O -0.555 6.555 18 O -0.511 6.511 19 C 0.088 3.912 20 C -0.160 4.160 21 C -0.184 4.184 22 C -0.164 4.164 23 H 0.270 0.730 24 H -0.021 1.021 25 H -0.020 1.020 26 H 0.045 0.955 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.427 0.573 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -16.623 7.990 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.135 3.865 10 O -0.309 6.309 11 C -0.021 4.021 12 C -0.054 4.054 13 N -0.267 5.267 14 C -0.058 4.058 15 C -0.146 4.146 16 C 0.333 3.667 17 O -0.446 6.446 18 O -0.325 6.325 19 C -0.039 4.039 20 C -0.179 4.179 21 C -0.221 4.221 22 C -0.201 4.201 23 H 0.078 0.922 24 H -0.003 1.003 25 H -0.002 1.002 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.289 0.711 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.128 -16.011 7.755 20.471 hybrid contribution -1.256 -0.051 -0.017 1.257 sum 8.872 -16.062 7.738 19.914 Atomic orbital electron populations 1.70085 1.07832 1.28523 1.50824 1.25969 0.95917 1.03404 0.94010 0.85194 0.78403 0.77043 0.78839 1.19241 1.20022 1.18788 1.21367 0.94033 0.90761 1.51756 0.92009 1.19766 0.88774 0.85205 0.92785 1.87887 1.35477 1.13607 1.93885 1.22602 0.95851 0.84944 0.98680 1.22019 0.97984 0.95449 0.89976 1.61700 1.04368 1.57017 1.03625 1.21776 0.94856 0.98624 0.90588 1.21330 0.97369 1.05274 0.90594 1.23577 0.86432 0.74086 0.82584 1.90720 1.31903 1.41952 1.80028 1.84502 1.53086 1.76595 1.18276 1.21778 0.87366 0.93883 1.00874 1.22209 0.93943 0.99104 1.02615 1.23095 1.04770 1.01511 0.92735 1.23005 0.93844 1.03401 0.99862 0.92160 1.00283 1.00179 0.93729 0.95052 0.89581 0.91520 0.92271 0.93244 0.84862 0.87024 0.71087 0.88831 0.93495 0.89558 0.87993 0.89451 0.88663 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 45.14 29.54 68.60 2.03 47.16 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -32.99 9.43 25.60 0.24 -32.75 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 12.22 5.69 71.24 0.41 12.62 16 10 O -0.39 -19.54 10.27 -148.98 -1.53 -21.07 16 11 C 0.06 2.20 6.08 71.98 0.44 2.63 16 12 C 0.07 2.16 5.22 86.30 0.45 2.61 16 13 N -0.54 -15.13 4.39 -896.21 -3.93 -19.06 16 14 C 0.07 1.82 4.10 86.30 0.35 2.18 16 15 C -0.11 -2.36 5.77 29.85 0.17 -2.18 16 16 C 0.49 11.30 8.33 71.23 0.59 11.89 16 17 O -0.55 -16.62 16.74 21.96 0.37 -16.25 16 18 O -0.51 -8.78 13.42 -51.37 -0.69 -9.47 16 19 C 0.09 1.85 5.11 86.31 0.44 2.29 16 20 C -0.16 -3.66 4.80 -10.79 -0.05 -3.71 16 21 C -0.18 -3.55 10.06 30.60 0.31 -3.24 16 22 C -0.16 -2.84 10.25 30.60 0.31 -2.53 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 25 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 26 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.03 1.24 6.42 -2.39 -0.02 1.22 16 28 H 0.09 2.56 6.94 -2.38 -0.02 2.54 16 29 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 30 H 0.06 1.91 6.26 -2.39 -0.01 1.89 16 31 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.13 2.08 6.32 -2.39 -0.02 2.07 16 33 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 34 H 0.43 3.70 9.10 -74.06 -0.67 3.03 16 35 H 0.09 1.62 6.01 -2.38 -0.01 1.61 16 36 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.10 1.69 8.03 -2.39 -0.02 1.67 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -74.49 343.56 1.00 -73.49 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.35 Total: 11.75 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 4.13 Total: -9.43 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -3.65 Total: -76.18 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.85 Total: -46.79 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.49 1.00 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717142730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.652 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds