Wall clock time and date at job start Mon Mar 30 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48506 * 109.46818 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47067 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00295 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.53871 * 113.59616 * 274.18876 * 15 14 13 17 17 C 1.53493 * 86.87497 * 220.38123 * 16 15 14 18 18 C 1.52590 * 120.61657 * 149.62408 * 17 16 15 19 19 S 1.81500 * 89.77233 * 93.86148 * 18 17 16 20 20 C 1.52595 * 120.49964 * 260.60605 * 17 16 15 21 21 C 1.53330 * 87.60004 * 25.08939 * 17 16 15 22 22 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 23 23 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 24 24 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 25 25 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 26 26 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 27 27 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 28 28 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 29 29 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 30 30 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 31 31 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 32 32 H 1.09003 * 112.84148 * 45.33353 * 15 14 13 33 33 H 1.09004 * 113.63967 * 334.86486 * 16 15 14 34 34 H 1.09001 * 113.63917 * 105.84170 * 16 15 14 35 35 H 1.09003 * 113.16762 * 209.08725 * 18 17 16 36 36 H 1.09004 * 113.16145 * 338.63413 * 18 17 16 37 37 H 1.09005 * 113.16475 * 21.26981 * 20 17 16 38 38 H 1.08998 * 113.16991 * 150.75877 * 20 17 16 39 39 H 1.09001 * 113.63850 * 220.39686 * 21 17 16 40 40 H 1.08999 * 113.71628 * 89.43199 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 4.4593 -6.9124 1.2941 15 6 5.2270 -6.8096 2.6136 16 6 6.3764 -5.7871 2.5793 17 6 7.1948 -6.8060 3.3843 18 6 8.7115 -6.8774 3.2337 19 16 8.8977 -5.7603 4.6521 20 6 7.3409 -6.6608 4.8963 21 6 6.2994 -7.8990 2.7887 22 1 -0.4851 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9451 -4.9831 -0.8877 26 1 0.9444 -4.9818 0.8922 27 1 2.1818 -6.9376 -0.0860 28 1 3.3214 -5.7962 -0.8388 29 1 2.7959 -5.9682 2.0564 30 1 4.0062 -7.9004 1.2139 31 1 5.1454 -6.7585 0.4612 32 1 4.5712 -6.7001 3.4773 33 1 6.7687 -5.6038 1.5790 34 1 6.1609 -4.8688 3.1257 35 1 9.1143 -7.8736 3.4168 36 1 9.0703 -6.4469 2.2988 37 1 6.5582 -6.0498 5.3461 38 1 7.4717 -7.6142 5.4081 39 1 6.0223 -8.6743 3.5030 40 1 6.6693 -8.3036 1.8467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717903820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:27 Heat of formation + Delta-G solvation = -11.310422 kcal Electronic energy + Delta-G solvation = -18286.222033 eV Core-core repulsion = 15421.324716 eV Total energy + Delta-G solvation = -2864.897317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14642 -37.12004 -35.50432 -33.01623 -32.46709 -29.17439 -26.86424 -26.67737 -25.97233 -24.85854 -22.25303 -21.54262 -20.76606 -18.59532 -16.73088 -16.38433 -15.96675 -15.71303 -15.44450 -15.19991 -15.03193 -14.46184 -14.13132 -13.72801 -13.49735 -13.35105 -12.91778 -12.48249 -12.34691 -12.30425 -11.83366 -11.66073 -11.27567 -11.20034 -10.91270 -10.79265 -10.69545 -10.66279 -10.53634 -10.31562 -9.99641 -9.85568 -9.03334 -8.75355 -8.15466 -8.07680 -7.97738 -6.05436 -4.06159 1.59064 1.70625 3.34741 3.39511 3.46021 3.86728 4.05145 4.23642 4.40525 4.46335 4.64610 4.77993 4.89110 4.98248 5.06419 5.15856 5.27300 5.31210 5.33009 5.39606 5.44644 5.53062 5.56239 5.62954 5.69668 5.79587 6.02332 6.05614 6.08768 6.13480 6.29893 6.34956 7.15190 7.22185 7.49270 7.58351 7.86812 8.22814 8.67722 9.08820 9.58627 11.06318 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.003437 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.396135 B = 8143.873593 C = 9472.663711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.071 3.929 15 C -0.103 4.103 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.069 4.069 19 S -0.296 6.296 20 C -0.059 4.059 21 C -0.113 4.113 22 H 0.263 0.737 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.338 0.662 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.148 -19.602 6.393 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.306 5.306 14 C -0.059 4.059 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.217 4.217 19 S -0.069 6.069 20 C -0.207 4.207 21 C -0.153 4.153 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.518 -17.914 6.772 23.442 hybrid contribution -1.135 -0.725 -0.219 1.365 sum 12.383 -18.640 6.553 23.318 Atomic orbital electron populations 1.69962 1.06118 1.27043 1.50946 1.24946 0.94951 0.99407 0.95268 0.86352 0.79751 0.82312 0.78188 1.20523 1.21145 1.19556 1.21076 0.94121 0.89351 1.50282 0.91488 1.20176 0.88861 0.83956 0.95077 1.87959 1.34620 1.12334 1.95011 1.22228 0.93893 0.86413 0.98807 1.21972 0.95719 0.95512 0.93154 1.60280 1.16189 1.49908 1.04214 1.21937 0.94438 0.92372 0.97124 1.22449 0.95274 0.96264 0.98220 1.22761 0.93412 0.96672 0.99825 1.22643 0.92455 1.00966 0.93655 1.24260 0.97948 1.00131 0.99375 1.89060 1.32624 1.52787 1.32459 1.24074 0.96555 1.01710 0.98341 1.22909 0.95565 0.95777 1.01055 0.92757 0.98049 0.97927 0.94291 0.94843 0.95024 0.90479 0.84383 0.95811 0.90970 0.89093 0.89033 0.90192 0.87994 0.88543 0.88364 0.87827 0.91045 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.28 55.43 0.74 -26.65 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -15.36 9.43 -34.44 -0.32 -15.69 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.42 5.69 36.01 0.20 5.63 16 10 O -0.38 -9.34 10.27 -35.23 -0.36 -9.70 16 11 C 0.06 1.20 6.22 37.16 0.23 1.43 16 12 C 0.07 0.95 6.07 -3.82 -0.02 0.93 16 13 N -0.67 -9.40 6.45 -113.78 -0.73 -10.14 16 14 C 0.07 0.74 5.51 -3.82 -0.02 0.72 16 15 C -0.10 -0.94 3.89 -89.72 -0.35 -1.29 16 16 C -0.09 -0.91 7.35 -26.02 -0.19 -1.10 16 17 C -0.10 -0.77 0.93 -154.50 -0.14 -0.92 16 18 C -0.07 -0.56 7.69 36.95 0.28 -0.27 16 19 S -0.30 -3.24 24.79 -107.50 -2.66 -5.91 16 20 C -0.06 -0.49 7.69 36.95 0.28 -0.20 16 21 C -0.11 -0.78 7.35 -26.11 -0.19 -0.97 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.34 4.43 8.73 -39.29 -0.34 4.08 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.78 7.88 -51.93 -0.41 0.38 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -32.50 341.68 -10.28 -42.78 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.05 Total: -2.58 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.34 Total: -10.21 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.00 Total: -36.79 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.36 Total: -9.70 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.66 Total: -5.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.50 -10.28 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717903820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.469 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds