Wall clock time and date at job start Mon Mar 30 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48506 * 109.46818 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47067 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00295 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.53871 * 113.59616 * 274.18876 * 15 14 13 17 17 C 1.53493 * 86.87497 * 220.38123 * 16 15 14 18 18 C 1.52590 * 120.61657 * 149.62408 * 17 16 15 19 19 S 1.81500 * 89.77233 * 93.86148 * 18 17 16 20 20 C 1.52595 * 120.49964 * 260.60605 * 17 16 15 21 21 C 1.53330 * 87.60004 * 25.08939 * 17 16 15 22 22 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 23 23 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 24 24 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 25 25 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 26 26 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 27 27 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 28 28 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 29 29 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 30 30 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 31 31 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 32 32 H 1.09003 * 112.84148 * 45.33353 * 15 14 13 33 33 H 1.09004 * 113.63967 * 334.86486 * 16 15 14 34 34 H 1.09001 * 113.63917 * 105.84170 * 16 15 14 35 35 H 1.09003 * 113.16762 * 209.08725 * 18 17 16 36 36 H 1.09004 * 113.16145 * 338.63413 * 18 17 16 37 37 H 1.09005 * 113.16475 * 21.26981 * 20 17 16 38 38 H 1.08998 * 113.16991 * 150.75877 * 20 17 16 39 39 H 1.09001 * 113.63850 * 220.39686 * 21 17 16 40 40 H 1.08999 * 113.71628 * 89.43199 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 4.4593 -6.9124 1.2941 15 6 5.2270 -6.8096 2.6136 16 6 6.3764 -5.7871 2.5793 17 6 7.1948 -6.8060 3.3843 18 6 8.7115 -6.8774 3.2337 19 16 8.8977 -5.7603 4.6521 20 6 7.3409 -6.6608 4.8963 21 6 6.2994 -7.8990 2.7887 22 1 -0.4851 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9451 -4.9831 -0.8877 26 1 0.9444 -4.9818 0.8922 27 1 2.1818 -6.9376 -0.0860 28 1 3.3214 -5.7962 -0.8388 29 1 2.7959 -5.9682 2.0564 30 1 4.0062 -7.9004 1.2139 31 1 5.1454 -6.7585 0.4612 32 1 4.5712 -6.7001 3.4773 33 1 6.7687 -5.6038 1.5790 34 1 6.1609 -4.8688 3.1257 35 1 9.1143 -7.8736 3.4168 36 1 9.0703 -6.4469 2.2988 37 1 6.5582 -6.0498 5.3461 38 1 7.4717 -7.6142 5.4081 39 1 6.0223 -8.6743 3.5030 40 1 6.6693 -8.3036 1.8467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717903820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:26 Heat of formation + Delta-G solvation = -32.551233 kcal Electronic energy + Delta-G solvation = -18287.143103 eV Core-core repulsion = 15421.324716 eV Total energy + Delta-G solvation = -2865.818388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85725 -38.75936 -36.76849 -34.90053 -33.66671 -30.59287 -28.83579 -27.33914 -26.67277 -25.92853 -24.44896 -22.81284 -21.59068 -19.28101 -18.61533 -17.56064 -17.48344 -16.85726 -16.63890 -16.30777 -16.08586 -16.03162 -15.26055 -15.02852 -14.97144 -14.20415 -13.98883 -13.69699 -13.66693 -13.17335 -13.07625 -12.95743 -12.81355 -12.64351 -12.47673 -12.26761 -11.97675 -11.81443 -11.63141 -11.32823 -11.25383 -11.11313 -10.84909 -10.65044 -10.16870 -9.14167 -8.83514 -8.31287 -6.42906 0.91650 0.97227 1.39813 1.42636 1.55036 2.35804 3.02383 3.13580 3.24165 3.31991 3.47750 3.76748 3.93027 4.02809 4.22063 4.28930 4.33762 4.40948 4.50064 4.58353 4.62922 4.67194 4.68435 4.72205 4.83646 4.85556 4.93131 4.95706 5.00152 5.04092 5.20814 5.23214 5.37706 5.56739 5.59009 5.98935 6.21459 6.54906 6.61543 6.88807 7.29503 8.81137 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.003437 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.396135 B = 8143.873593 C = 9472.663711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.397 6.397 11 C 0.053 3.947 12 C 0.077 3.923 13 N -0.701 5.701 14 C 0.074 3.926 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.089 4.089 18 C -0.047 4.047 19 S -0.385 6.385 20 C -0.039 4.039 21 C -0.091 4.091 22 H 0.271 0.729 23 H -0.016 1.016 24 H -0.017 1.017 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.341 0.659 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.765 -21.245 6.365 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.316 6.316 11 C -0.024 4.024 12 C -0.053 4.053 13 N -0.333 5.333 14 C -0.054 4.054 15 C -0.120 4.120 16 C -0.139 4.139 17 C -0.090 4.090 18 C -0.195 4.195 19 S -0.159 6.159 20 C -0.187 4.187 21 C -0.131 4.131 22 H 0.079 0.921 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.135 -19.589 6.742 25.080 hybrid contribution -1.382 -0.282 -0.219 1.427 sum 12.753 -19.871 6.523 24.496 Atomic orbital electron populations 1.70061 1.07701 1.28591 1.50710 1.25937 0.95953 1.03298 0.93967 0.85213 0.78345 0.77155 0.78884 1.19159 1.19784 1.19135 1.21394 0.94005 0.91019 1.51968 0.92315 1.19779 0.88658 0.85021 0.93162 1.87912 1.34700 1.13971 1.95060 1.22628 0.95742 0.84672 0.99381 1.21852 0.94642 0.95365 0.93395 1.60246 1.16954 1.52162 1.03979 1.21966 0.93466 0.92359 0.97646 1.22437 0.95168 0.96906 0.97539 1.22772 0.95290 0.96384 0.99483 1.22504 0.92575 1.00662 0.93265 1.24338 0.97647 1.00099 0.97396 1.89437 1.35558 1.55173 1.35718 1.24155 0.93888 1.01954 0.98712 1.22841 0.93197 0.95060 1.02040 0.92057 0.99856 0.99918 0.93606 0.94299 0.91364 0.91220 0.84052 0.93641 0.91444 0.89198 0.89836 0.93183 0.85409 0.88590 0.88969 0.85204 0.88847 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.28 21.45 0.28 -56.75 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 45.62 29.54 68.60 2.03 47.64 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -33.64 9.43 25.60 0.24 -33.40 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.10 5.69 71.24 0.41 12.51 16 10 O -0.40 -19.98 10.27 -148.98 -1.53 -21.51 16 11 C 0.05 1.96 6.22 71.98 0.45 2.40 16 12 C 0.08 2.12 6.07 86.30 0.52 2.64 16 13 N -0.70 -18.79 6.45 -513.88 -3.31 -22.11 16 14 C 0.07 1.40 5.51 86.30 0.48 1.87 16 15 C -0.10 -1.65 3.89 -10.21 -0.04 -1.69 16 16 C -0.10 -2.05 7.35 31.05 0.23 -1.83 16 17 C -0.09 -1.26 0.93 -52.18 -0.05 -1.31 16 18 C -0.05 -0.68 7.69 71.85 0.55 -0.12 16 19 S -0.39 -8.47 24.79 -56.49 -1.40 -9.87 16 20 C -0.04 -0.59 7.69 71.85 0.55 -0.04 16 21 C -0.09 -0.92 7.35 31.00 0.23 -0.69 16 22 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 23 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 29 H 0.34 8.60 8.73 -89.70 -0.78 7.82 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.79 7.92 -2.38 -0.02 1.77 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 Total: -1.00 -72.00 341.68 0.31 -71.69 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.22 Total: 9.69 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.03 Total: -18.79 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -3.03 Total: -78.86 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.53 Total: -21.51 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.40 Total: -9.87 kcal Total: -72.00 0.31 -71.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717903820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.134 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds