Wall clock time and date at job start Mon Mar 30 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99973 * 2 1 4 4 C 1.53004 * 108.82914 * 184.48365 * 3 2 1 5 5 N 1.46905 * 109.47097 * 299.00693 * 4 3 2 6 6 C 1.46898 * 110.99890 * 185.33965 * 5 4 3 7 7 C 1.52994 * 109.46971 * 182.22783 * 6 5 4 8 8 C 1.50708 * 115.55200 * 56.96776 * 7 6 5 9 9 H 1.07999 * 119.99668 * 215.09866 * 8 7 6 10 10 C 1.37878 * 120.00096 * 35.08968 * 8 7 6 11 11 N 1.31512 * 120.00070 * 200.83851 * 10 8 7 12 12 Si 1.86799 * 119.99608 * 20.83985 * 10 8 7 13 13 H 1.48503 * 109.47116 * 265.03701 * 12 10 8 14 14 H 1.48503 * 109.46836 * 145.04115 * 12 10 8 15 15 H 1.48494 * 109.47519 * 25.04128 * 12 10 8 16 16 C 1.53004 * 117.49680 * 202.63215 * 7 6 5 17 17 C 1.52998 * 117.49948 * 271.29453 * 7 6 5 18 18 C 1.52332 * 108.86642 * 65.95315 * 3 2 1 19 19 C 1.54256 * 112.59075 * 239.32269 * 18 3 2 20 20 S 1.83960 * 102.57736 * 24.53130 * 19 18 3 21 21 C 1.54258 * 108.75279 * 302.95031 * 3 2 1 22 22 H 1.08996 * 109.47032 * 66.05026 * 1 2 3 23 23 H 1.09000 * 109.47088 * 186.05524 * 1 2 3 24 24 H 1.08998 * 109.46709 * 306.05202 * 1 2 3 25 25 H 1.08993 * 109.46816 * 179.00329 * 4 3 2 26 26 H 1.08999 * 109.46585 * 59.00339 * 4 3 2 27 27 H 1.00900 * 111.00159 * 61.37780 * 5 4 3 28 28 H 1.08999 * 109.47313 * 62.22620 * 6 5 4 29 29 H 1.09001 * 109.46473 * 302.22375 * 6 5 4 30 30 H 0.96992 * 119.99943 * 180.02562 * 11 10 8 31 31 H 1.09005 * 117.49913 * 215.00205 * 16 7 6 32 32 H 1.08998 * 117.50127 * 0.02566 * 16 7 6 33 33 H 1.08998 * 117.50105 * 359.97438 * 17 7 6 34 34 H 1.09003 * 117.50068 * 144.97917 * 17 7 6 35 35 H 1.09004 * 108.87051 * 0.14819 * 18 3 2 36 36 H 1.09009 * 108.86930 * 118.64789 * 18 3 2 37 37 H 1.08996 * 110.78986 * 142.80229 * 19 18 3 38 38 H 1.08997 * 110.78947 * 266.26231 * 19 18 3 39 39 H 1.09005 * 110.78212 * 214.48608 * 21 3 2 40 40 H 1.08998 * 110.78827 * 337.93671 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5300 1.1694 -0.1132 5 7 4.0418 0.4187 1.0412 6 6 5.5101 0.3767 1.0329 7 6 6.0032 -0.4583 2.2163 8 6 5.4808 -1.8706 2.2778 9 1 5.2750 -2.3290 3.2337 10 6 5.2655 -2.5773 1.1136 11 7 4.4529 -3.6113 1.1128 12 14 6.1283 -2.0661 -0.4624 13 1 5.2341 -1.1812 -1.2515 14 1 6.4587 -3.2743 -1.2601 15 1 7.3778 -1.3365 -0.1285 16 6 7.4301 -0.2108 2.7097 17 6 6.2381 0.2665 3.5431 18 6 1.6740 1.9944 1.3164 19 6 0.8885 3.3066 1.1147 20 16 0.0876 3.0467 -0.5209 21 6 1.4862 2.0817 -1.2257 22 1 -0.3633 0.4172 -0.9392 23 1 -0.3633 -1.0219 0.1084 24 1 -0.3633 0.6048 0.8309 25 1 3.9831 2.1605 -0.1320 26 1 3.7797 0.6382 -1.0317 27 1 3.6535 -0.5122 1.0682 28 1 5.9031 1.3902 1.1145 29 1 5.8554 -0.0730 0.1019 30 1 4.3017 -4.1087 0.2939 31 1 7.9911 -1.0694 3.0788 32 1 8.0175 0.5472 2.1915 33 1 6.0418 1.3382 3.5728 34 1 6.0145 -0.2781 4.4605 35 1 1.0773 1.3165 1.9267 36 1 2.6012 2.2186 1.8439 37 1 0.1394 3.4331 1.8964 38 1 1.5643 4.1611 1.0831 39 1 2.2548 2.7463 -1.6203 40 1 1.1336 1.3959 -1.9961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719236085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:59 Heat of formation + Delta-G solvation = -5.172120 kcal Electronic energy + Delta-G solvation = -20112.701817 eV Core-core repulsion = 17248.070677 eV Total energy + Delta-G solvation = -2864.631140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33846 -37.24093 -34.63115 -33.13374 -32.20834 -29.92613 -27.58946 -26.30880 -25.26062 -24.00280 -22.75658 -21.26788 -19.68222 -18.96557 -17.01691 -16.61849 -16.29308 -15.56376 -15.43319 -14.87034 -14.69714 -14.00077 -13.84971 -13.65583 -13.31455 -12.83966 -12.69403 -12.27671 -12.17904 -12.05178 -11.87605 -11.72422 -11.39128 -10.98734 -10.93863 -10.69135 -10.56650 -10.39978 -10.01893 -9.93360 -9.47692 -9.36402 -9.27174 -8.80855 -8.25199 -7.75335 -7.56111 -6.20584 -4.05493 1.75298 2.16358 3.17667 3.34778 3.39923 3.90754 4.33955 4.39160 4.64177 4.75657 4.84260 5.02855 5.06783 5.19731 5.32266 5.44647 5.52480 5.61088 5.67330 5.71764 5.75486 5.86170 5.91889 5.98359 6.07902 6.15910 6.22355 6.39192 6.44613 6.57983 6.63394 6.78972 7.00046 7.22776 7.38157 7.72653 7.81433 8.28500 8.51740 8.91000 9.46862 10.91293 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.006367 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.241128 B = 4396.602463 C = 4887.672621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.123 3.877 4 C 0.069 3.931 5 N -0.670 5.670 6 C 0.091 3.909 7 C 0.016 3.984 8 C -0.483 4.483 9 H 0.076 0.924 10 C 0.080 3.920 11 N -0.875 5.875 12 Si 0.875 3.125 13 H -0.283 1.283 14 H -0.298 1.298 15 H -0.264 1.264 16 C -0.214 4.214 17 C -0.178 4.178 18 C -0.144 4.144 19 C -0.063 4.063 20 S -0.312 6.312 21 C -0.090 4.090 22 H 0.041 0.959 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.372 0.628 28 H 0.053 0.947 29 H 0.018 0.982 30 H 0.265 0.735 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 12.457 -3.307 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.281 6.281 3 C 0.081 3.919 4 C -0.063 4.063 5 N -0.305 5.305 6 C -0.038 4.038 7 C 0.014 3.986 8 C -0.520 4.520 9 H 0.094 0.906 10 C -0.124 4.124 11 N -0.510 5.510 12 Si 0.705 3.295 13 H -0.210 1.210 14 H -0.226 1.226 15 H -0.189 1.189 16 C -0.253 4.253 17 C -0.216 4.216 18 C -0.183 4.183 19 C -0.211 4.211 20 S -0.085 6.085 21 C -0.239 4.239 22 H 0.060 0.940 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.196 0.804 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.282 12.993 -3.442 15.287 hybrid contribution 1.532 -0.521 -1.278 2.062 sum -5.750 12.472 -4.720 14.523 Atomic orbital electron populations 1.22867 0.81340 1.02051 1.00533 1.88142 1.19680 1.25591 1.94657 1.22049 0.94293 0.84543 0.91051 1.22018 0.90562 0.99476 0.94238 1.60461 1.06705 1.24620 1.38749 1.21625 0.87797 0.97561 0.96798 1.19252 0.93104 0.95371 0.90836 1.20290 1.42630 0.94602 0.94439 0.90569 1.24918 0.93828 0.95268 0.98359 1.70001 1.31806 1.20711 1.28516 0.87089 0.81544 0.76949 0.83903 1.21034 1.22563 1.18942 1.23149 0.92984 1.02158 1.06974 1.22684 1.04077 0.98251 0.96575 1.22555 1.02780 0.94759 0.98216 1.24254 1.01018 1.01086 0.94697 1.87875 1.29601 1.72706 1.18319 1.24927 0.97387 1.00492 1.01074 0.94001 0.90141 0.93323 0.90468 0.94850 0.80410 0.92900 0.96489 0.92484 0.89888 0.91742 0.91036 0.90283 0.89352 0.87568 0.87848 0.89266 0.88388 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.35 101.05 0.95 1.34 16 2 O -0.36 -6.24 9.56 -35.23 -0.34 -6.57 16 3 C 0.12 1.81 0.83 -90.30 -0.08 1.73 16 4 C 0.07 1.14 4.41 -3.82 -0.02 1.12 16 5 N -0.67 -13.42 5.58 -113.78 -0.63 -14.05 16 6 C 0.09 1.91 4.63 -3.83 -0.02 1.90 16 7 C 0.02 0.36 1.49 -155.66 -0.23 0.13 16 8 C -0.48 -13.12 8.81 -34.44 -0.30 -13.42 16 9 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 10 C 0.08 2.22 4.54 -17.82 -0.08 2.14 16 11 N -0.88 -25.60 13.96 55.43 0.77 -24.83 16 12 Si 0.87 21.49 24.30 -169.99 -4.13 17.36 16 13 H -0.28 -6.75 6.65 56.52 0.38 -6.38 16 14 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 15 H -0.26 -6.37 7.07 56.52 0.40 -5.97 16 16 C -0.21 -4.51 9.96 -26.69 -0.27 -4.78 16 17 C -0.18 -3.67 9.94 -26.69 -0.27 -3.93 16 18 C -0.14 -1.92 4.86 -26.42 -0.13 -2.05 16 19 C -0.06 -0.68 7.46 37.81 0.28 -0.40 16 20 S -0.31 -3.85 21.23 -107.50 -2.28 -6.14 16 21 C -0.09 -1.13 5.88 37.82 0.22 -0.91 16 22 H 0.04 0.54 6.31 -51.93 -0.33 0.21 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.64 6.20 -51.93 -0.32 0.31 16 25 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 26 H 0.03 0.61 7.91 -51.93 -0.41 0.19 16 27 H 0.37 8.74 6.68 -39.29 -0.26 8.48 16 28 H 0.05 1.00 8.11 -51.93 -0.42 0.57 16 29 H 0.02 0.39 3.05 -51.93 -0.16 0.23 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.09 1.26 6.64 -51.93 -0.34 0.91 16 36 H 0.11 1.50 7.05 -51.92 -0.37 1.13 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.10 7.85 -51.93 -0.41 0.69 16 40 H 0.11 1.40 7.32 -51.93 -0.38 1.02 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -28.54 316.22 -8.15 -36.69 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.37 Total: 9.89 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 0.06 Total: -17.13 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.14 Total: -38.88 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.34 Total: -6.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.13 Total: 17.36 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.28 Total: -6.14 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.54 -8.15 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719236085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.519 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds