Wall clock time and date at job start Mon Mar 30 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99973 * 2 1 4 4 C 1.53004 * 108.82914 * 184.48365 * 3 2 1 5 5 N 1.46905 * 109.47097 * 299.00693 * 4 3 2 6 6 C 1.46898 * 110.99890 * 185.33965 * 5 4 3 7 7 C 1.52994 * 109.46971 * 182.22783 * 6 5 4 8 8 C 1.50708 * 115.55200 * 56.96776 * 7 6 5 9 9 H 1.07999 * 119.99668 * 215.09866 * 8 7 6 10 10 C 1.37878 * 120.00096 * 35.08968 * 8 7 6 11 11 N 1.31512 * 120.00070 * 200.83851 * 10 8 7 12 12 Si 1.86799 * 119.99608 * 20.83985 * 10 8 7 13 13 H 1.48503 * 109.47116 * 265.03701 * 12 10 8 14 14 H 1.48503 * 109.46836 * 145.04115 * 12 10 8 15 15 H 1.48494 * 109.47519 * 25.04128 * 12 10 8 16 16 C 1.53004 * 117.49680 * 202.63215 * 7 6 5 17 17 C 1.52998 * 117.49948 * 271.29453 * 7 6 5 18 18 C 1.52332 * 108.86642 * 65.95315 * 3 2 1 19 19 C 1.54256 * 112.59075 * 239.32269 * 18 3 2 20 20 S 1.83960 * 102.57736 * 24.53130 * 19 18 3 21 21 C 1.54258 * 108.75279 * 302.95031 * 3 2 1 22 22 H 1.08996 * 109.47032 * 66.05026 * 1 2 3 23 23 H 1.09000 * 109.47088 * 186.05524 * 1 2 3 24 24 H 1.08998 * 109.46709 * 306.05202 * 1 2 3 25 25 H 1.08993 * 109.46816 * 179.00329 * 4 3 2 26 26 H 1.08999 * 109.46585 * 59.00339 * 4 3 2 27 27 H 1.00900 * 111.00159 * 61.37780 * 5 4 3 28 28 H 1.08999 * 109.47313 * 62.22620 * 6 5 4 29 29 H 1.09001 * 109.46473 * 302.22375 * 6 5 4 30 30 H 0.96992 * 119.99943 * 180.02562 * 11 10 8 31 31 H 1.09005 * 117.49913 * 215.00205 * 16 7 6 32 32 H 1.08998 * 117.50127 * 0.02566 * 16 7 6 33 33 H 1.08998 * 117.50105 * 359.97438 * 17 7 6 34 34 H 1.09003 * 117.50068 * 144.97917 * 17 7 6 35 35 H 1.09004 * 108.87051 * 0.14819 * 18 3 2 36 36 H 1.09009 * 108.86930 * 118.64789 * 18 3 2 37 37 H 1.08996 * 110.78986 * 142.80229 * 19 18 3 38 38 H 1.08997 * 110.78947 * 266.26231 * 19 18 3 39 39 H 1.09005 * 110.78212 * 214.48608 * 21 3 2 40 40 H 1.08998 * 110.78827 * 337.93671 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5300 1.1694 -0.1132 5 7 4.0418 0.4187 1.0412 6 6 5.5101 0.3767 1.0329 7 6 6.0032 -0.4583 2.2163 8 6 5.4808 -1.8706 2.2778 9 1 5.2750 -2.3290 3.2337 10 6 5.2655 -2.5773 1.1136 11 7 4.4529 -3.6113 1.1128 12 14 6.1283 -2.0661 -0.4624 13 1 5.2341 -1.1812 -1.2515 14 1 6.4587 -3.2743 -1.2601 15 1 7.3778 -1.3365 -0.1285 16 6 7.4301 -0.2108 2.7097 17 6 6.2381 0.2665 3.5431 18 6 1.6740 1.9944 1.3164 19 6 0.8885 3.3066 1.1147 20 16 0.0876 3.0467 -0.5209 21 6 1.4862 2.0817 -1.2257 22 1 -0.3633 0.4172 -0.9392 23 1 -0.3633 -1.0219 0.1084 24 1 -0.3633 0.6048 0.8309 25 1 3.9831 2.1605 -0.1320 26 1 3.7797 0.6382 -1.0317 27 1 3.6535 -0.5122 1.0682 28 1 5.9031 1.3902 1.1145 29 1 5.8554 -0.0730 0.1019 30 1 4.3017 -4.1087 0.2939 31 1 7.9911 -1.0694 3.0788 32 1 8.0175 0.5472 2.1915 33 1 6.0418 1.3382 3.5728 34 1 6.0145 -0.2781 4.4605 35 1 1.0773 1.3165 1.9267 36 1 2.6012 2.2186 1.8439 37 1 0.1394 3.4331 1.8964 38 1 1.5643 4.1611 1.0831 39 1 2.2548 2.7463 -1.6203 40 1 1.1336 1.3959 -1.9961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719236085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:59 Heat of formation + Delta-G solvation = -23.992408 kcal Electronic energy + Delta-G solvation = -20113.517926 eV Core-core repulsion = 17248.070677 eV Total energy + Delta-G solvation = -2865.447249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53033 -38.92098 -36.00665 -34.42604 -34.24785 -31.01183 -28.90166 -27.87362 -26.87163 -25.18957 -24.11271 -22.91983 -21.00959 -20.64969 -18.44627 -18.04910 -17.54590 -17.27791 -16.70415 -16.16241 -15.94174 -15.47998 -15.42742 -14.98855 -14.77153 -14.50407 -13.82122 -13.70867 -13.64378 -13.31011 -13.06058 -12.93222 -12.85634 -12.55141 -12.48414 -12.08617 -12.04357 -11.85023 -11.80453 -11.34731 -11.15890 -10.87982 -10.62413 -10.55111 -10.24685 -9.13775 -8.69358 -8.34372 -6.21119 0.81097 1.22027 1.24080 1.34020 1.44797 2.29344 2.77051 2.86147 3.19202 3.49492 3.63882 3.70102 3.94072 4.10346 4.13834 4.15486 4.30045 4.31741 4.49347 4.50474 4.56750 4.61091 4.64698 4.66533 4.73998 4.84922 4.88895 4.92051 4.99622 5.06437 5.12222 5.29652 5.34189 5.58798 5.73412 6.19777 6.33089 6.36368 6.53563 6.76083 7.33241 8.81687 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.006367 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.241128 B = 4396.602463 C = 4887.672621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.121 3.879 4 C 0.067 3.933 5 N -0.672 5.672 6 C 0.094 3.906 7 C -0.016 4.016 8 C -0.484 4.484 9 H 0.030 0.970 10 C 0.037 3.963 11 N -0.923 5.923 12 Si 0.934 3.066 13 H -0.273 1.273 14 H -0.307 1.307 15 H -0.250 1.250 16 C -0.202 4.202 17 C -0.162 4.162 18 C -0.138 4.138 19 C -0.051 4.051 20 S -0.323 6.323 21 C -0.084 4.084 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.016 0.984 27 H 0.349 0.651 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 15.608 -3.996 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C 0.079 3.921 4 C -0.064 4.064 5 N -0.303 5.303 6 C -0.034 4.034 7 C -0.017 4.017 8 C -0.522 4.522 9 H 0.048 0.952 10 C -0.162 4.162 11 N -0.561 5.561 12 Si 0.763 3.237 13 H -0.200 1.200 14 H -0.236 1.236 15 H -0.174 1.174 16 C -0.240 4.240 17 C -0.199 4.199 18 C -0.177 4.177 19 C -0.198 4.198 20 S -0.096 6.096 21 C -0.233 4.233 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.125 0.875 26 H 0.035 0.965 27 H 0.169 0.831 28 H 0.104 0.896 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.616 16.188 -4.121 17.967 hybrid contribution 1.298 -1.521 -0.938 2.209 sum -5.318 14.667 -5.059 16.401 Atomic orbital electron populations 1.22923 0.80074 1.02297 1.01288 1.88097 1.21245 1.27451 1.94949 1.22144 0.93114 0.84116 0.92689 1.22192 0.92065 1.00022 0.92113 1.60480 1.06171 1.23183 1.40499 1.21615 0.88368 0.98561 0.94894 1.19270 0.95144 0.93725 0.93603 1.20414 1.42338 0.96913 0.92493 0.95158 1.25522 0.94168 0.95214 1.01342 1.70123 1.33954 1.22658 1.29360 0.86139 0.81013 0.76347 0.80241 1.20006 1.23552 1.17425 1.23151 0.92151 1.02483 1.06248 1.22716 1.02922 0.99488 0.94806 1.22434 1.02585 0.95589 0.97098 1.24289 1.01251 1.00205 0.94079 1.87965 1.29903 1.72441 1.19328 1.24845 0.97916 1.00500 0.99989 0.93007 0.90270 0.92666 0.87493 0.96536 0.83076 0.89644 0.97851 0.92636 0.90954 0.88736 0.88036 0.91417 0.90828 0.88124 0.86374 0.87341 0.86603 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.35 113.37 1.06 1.89 16 2 O -0.40 -13.69 9.56 -148.98 -1.42 -15.12 16 3 C 0.12 3.38 0.83 -10.59 -0.01 3.37 16 4 C 0.07 2.09 4.41 86.30 0.38 2.47 16 5 N -0.67 -25.98 5.58 -513.89 -2.87 -28.84 16 6 C 0.09 3.73 4.63 86.30 0.40 4.13 16 7 C -0.02 -0.73 1.49 -52.93 -0.08 -0.81 16 8 C -0.48 -26.96 8.81 25.60 0.23 -26.73 16 9 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 10 C 0.04 2.12 4.54 84.66 0.38 2.50 16 11 N -0.92 -56.20 13.96 21.45 0.30 -55.90 16 12 Si 0.93 44.68 24.30 68.60 1.67 46.35 16 13 H -0.27 -12.53 6.65 99.48 0.66 -11.87 16 14 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 15 H -0.25 -11.26 7.07 99.48 0.70 -10.56 16 16 C -0.20 -7.94 9.96 30.62 0.30 -7.64 16 17 C -0.16 -6.28 9.94 30.62 0.30 -5.97 16 18 C -0.14 -3.41 4.86 30.80 0.15 -3.26 16 19 C -0.05 -0.95 7.46 72.41 0.54 -0.41 16 20 S -0.32 -7.19 21.23 -56.49 -1.20 -8.38 16 21 C -0.08 -1.93 5.88 72.41 0.43 -1.50 16 22 H 0.05 1.30 6.31 -2.39 -0.02 1.28 16 23 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.05 1.41 6.20 -2.39 -0.01 1.40 16 25 H 0.11 2.66 8.12 -2.39 -0.02 2.64 16 26 H 0.02 0.57 7.91 -2.39 -0.02 0.55 16 27 H 0.35 16.55 6.68 -89.69 -0.60 15.95 16 28 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 29 H 0.00 0.17 3.05 -2.39 -0.01 0.16 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.04 6.64 -2.39 -0.02 2.02 16 36 H 0.10 2.61 7.05 -2.38 -0.02 2.59 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 2.23 7.85 -2.38 -0.02 2.21 16 40 H 0.11 2.56 7.32 -2.39 -0.02 2.54 16 Total: -1.00 -63.16 316.22 0.94 -62.21 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.38 Total: 31.64 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.09 Total: -31.97 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.57 Total: -84.74 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.42 Total: -15.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.67 Total: 46.35 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.20 Total: -8.38 kcal Total: -63.16 0.94 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719236085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.220 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds