Wall clock time and date at job start Mon Mar 30 2020 04:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47043 * 299.99898 * 3 2 1 6 6 H 1.48496 * 109.47363 * 60.00263 * 3 2 1 7 7 C 1.37882 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99896 * 178.59067 * 7 2 1 9 9 C 1.50698 * 120.00183 * 358.59788 * 7 2 1 10 10 C 1.52993 * 115.55212 * 84.94554 * 9 7 2 11 11 O 1.42905 * 109.47026 * 39.89436 * 10 9 7 12 12 C 1.42897 * 114.00064 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46903 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46796 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.78971 * 54.51027 * 14 13 12 16 16 C 1.53250 * 109.62996 * 174.99700 * 14 13 12 17 17 N 1.46463 * 109.85898 * 181.70802 * 16 14 13 18 18 C 1.46467 * 112.56410 * 287.34227 * 17 16 14 19 19 C 1.53257 * 109.85394 * 72.65746 * 18 17 16 20 20 S 1.81892 * 108.50612 * 297.99689 * 19 18 17 21 21 C 1.52993 * 117.51676 * 230.65429 * 9 7 2 22 22 C 1.52995 * 60.00426 * 107.47771 * 21 9 7 23 23 H 0.97001 * 119.99220 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47606 * 279.89831 * 10 9 7 25 25 H 1.09000 * 109.47129 * 159.89302 * 10 9 7 26 26 H 1.08998 * 109.47119 * 60.00431 * 12 11 10 27 27 H 1.08999 * 109.47228 * 299.99609 * 12 11 10 28 28 H 1.08998 * 109.47050 * 60.00182 * 13 12 11 29 29 H 1.08999 * 109.46690 * 299.99731 * 13 12 11 30 30 H 1.09002 * 109.40786 * 301.82948 * 16 14 13 31 31 H 1.09004 * 109.40603 * 61.59271 * 16 14 13 32 32 H 1.00898 * 111.00355 * 52.45859 * 17 16 14 33 33 H 1.08996 * 109.40649 * 312.54304 * 18 17 16 34 34 H 1.09002 * 109.40834 * 192.77649 * 18 17 16 35 35 H 1.09001 * 109.62387 * 178.29177 * 19 18 17 36 36 H 1.08996 * 109.79197 * 57.80371 * 19 18 17 37 37 H 1.09002 * 117.50132 * 214.97004 * 21 9 7 38 38 H 1.09002 * 117.50011 * 359.97438 * 21 9 7 39 39 H 1.09003 * 117.49976 * 252.51329 * 22 21 9 40 40 H 1.09003 * 117.50393 * 107.48804 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0843 -1.1943 -0.0225 9 6 1.2514 -2.4990 0.0331 10 6 0.7872 -3.0270 -1.3258 11 8 1.8091 -2.8013 -2.2989 12 6 1.4748 -3.2608 -3.6100 13 6 2.6351 -2.9694 -4.5638 14 6 2.2774 -3.4619 -5.9675 15 1 1.3304 -3.0234 -6.2824 16 6 3.3824 -3.0612 -6.9509 17 7 3.0258 -3.4948 -8.3037 18 6 3.1367 -4.9450 -8.4766 19 6 1.9924 -5.6464 -7.7368 20 16 2.1393 -5.2757 -5.9621 21 6 1.6653 -3.5279 1.0870 22 6 0.3487 -2.7637 1.2397 23 1 -0.4849 0.8401 0.0004 24 1 -0.1221 -2.5067 -1.6265 25 1 0.5864 -4.0958 -1.2509 26 1 0.5796 -2.7456 -3.9583 27 1 1.2886 -4.3344 -3.5823 28 1 3.5301 -3.4849 -4.2154 29 1 2.8217 -1.8958 -4.5916 30 1 3.5036 -1.9780 -6.9378 31 1 4.3194 -3.5329 -6.6546 32 1 2.1047 -3.1699 -8.5565 33 1 4.0907 -5.2858 -8.0743 34 1 3.0848 -5.1882 -9.5379 35 1 2.0610 -6.7230 -7.8930 36 1 1.0346 -5.2827 -8.1089 37 1 1.6070 -4.5811 0.8123 38 1 2.4828 -3.2614 1.7568 39 1 0.2999 -1.9942 2.0102 40 1 -0.5759 -3.3140 1.0655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719988797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:55 Heat of formation + Delta-G solvation = -28.316358 kcal Electronic energy + Delta-G solvation = -18802.414425 eV Core-core repulsion = 15936.779676 eV Total energy + Delta-G solvation = -2865.634750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.11318 -37.40970 -35.79302 -33.68722 -31.81633 -30.21796 -27.59745 -25.83219 -24.86637 -23.22079 -22.13501 -21.38305 -21.02103 -19.06364 -17.58373 -16.26382 -15.89746 -15.57654 -15.20031 -14.89758 -14.59290 -14.44473 -14.23307 -14.03929 -13.76552 -13.00152 -12.82510 -12.41638 -12.16878 -12.00638 -11.72413 -11.38428 -11.13108 -10.91152 -10.88021 -10.71108 -10.53799 -10.36289 -10.17318 -10.06019 -9.40603 -8.95243 -8.91760 -8.63468 -8.33245 -7.96003 -7.75691 -5.93775 -3.96060 1.48756 2.31088 3.34089 3.41752 3.47296 3.78695 4.21044 4.46050 4.49574 4.62655 4.76037 4.84718 5.01998 5.21128 5.26266 5.34187 5.36782 5.43187 5.50619 5.53618 5.69942 5.75924 5.87293 6.17169 6.27004 6.31275 6.36024 6.45790 6.57306 6.71384 6.78086 6.90018 6.91967 7.12721 7.44832 7.54076 7.98885 8.22715 8.58826 9.03354 9.67513 11.16368 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.004185 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.237330 B = 6688.890420 C = 7504.161251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.470 4.470 8 H 0.060 0.940 9 C 0.042 3.958 10 C 0.111 3.889 11 O -0.360 6.360 12 C 0.060 3.940 13 C -0.095 4.095 14 C -0.082 4.082 15 H 0.089 0.911 16 C 0.062 3.938 17 N -0.692 5.692 18 C 0.058 3.942 19 C -0.131 4.131 20 S -0.253 6.253 21 C -0.211 4.211 22 C -0.151 4.151 23 H 0.257 0.743 24 H 0.045 0.955 25 H 0.014 0.986 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.344 0.656 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -8.815 -15.812 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.042 3.958 10 C 0.035 3.965 11 O -0.278 6.278 12 C -0.017 4.017 13 C -0.134 4.134 14 C -0.212 4.212 15 H 0.107 0.893 16 C -0.070 4.070 17 N -0.320 5.320 18 C -0.073 4.073 19 C -0.281 4.281 20 S -0.027 6.027 21 C -0.249 4.249 22 C -0.188 4.188 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.162 0.838 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.576 -9.197 -15.154 18.084 hybrid contribution -0.971 1.194 -0.572 1.642 sum 2.605 -8.003 -15.726 17.836 Atomic orbital electron populations 1.70021 1.05817 1.26034 1.50706 1.24948 0.94803 0.98789 0.94903 0.86564 0.80335 0.83905 0.77363 1.19695 1.21158 1.21211 1.20335 0.92415 0.88215 1.49788 0.92187 1.18760 0.98257 0.93921 0.84902 1.22036 0.89910 0.94879 0.89682 1.88013 1.41996 1.82019 1.15809 1.22315 0.96155 0.97642 0.85636 1.21259 0.99714 1.02598 0.89805 1.24077 1.03048 0.93115 1.01004 0.89262 1.22345 0.97208 1.02088 0.85309 1.60065 1.34395 1.12227 1.25319 1.22230 0.97728 0.86835 1.00513 1.24301 1.02735 1.05576 0.95468 1.87381 1.97013 1.08924 1.09393 1.23074 0.99224 0.95621 1.06947 1.22497 0.91470 1.01378 1.03478 0.93374 0.93680 0.96761 0.94385 0.93968 0.90095 0.89308 0.89007 0.89385 0.83767 0.89599 0.89654 0.87414 0.89999 0.91787 0.90374 0.89667 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 12.80 55.43 0.71 -24.91 16 2 C 0.07 1.89 5.41 -17.81 -0.10 1.79 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.47 -13.27 8.24 -34.44 -0.28 -13.56 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.04 1.08 1.81 -155.67 -0.28 0.80 16 10 C 0.11 2.66 6.01 37.15 0.22 2.88 16 11 O -0.36 -8.30 9.73 -35.23 -0.34 -8.65 16 12 C 0.06 1.08 5.78 37.16 0.21 1.30 16 13 C -0.09 -1.38 5.06 -26.73 -0.14 -1.51 16 14 C -0.08 -0.94 2.67 -26.60 -0.07 -1.01 16 15 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 16 C 0.06 0.60 5.71 -3.93 -0.02 0.58 16 17 N -0.69 -6.00 6.70 -114.14 -0.76 -6.76 16 18 C 0.06 0.45 6.42 -3.93 -0.03 0.42 16 19 C -0.13 -1.09 6.59 37.29 0.25 -0.85 16 20 S -0.25 -3.07 20.65 -107.50 -2.22 -5.29 16 21 C -0.21 -4.83 9.88 -26.74 -0.26 -5.09 16 22 C -0.15 -3.64 9.33 -26.73 -0.25 -3.89 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.01 0.31 7.95 -51.93 -0.41 -0.10 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.74 7.19 -51.93 -0.37 0.37 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 32 H 0.34 2.67 8.65 -39.29 -0.34 2.33 16 33 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 39 H 0.08 2.18 8.14 -51.93 -0.42 1.75 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -30.15 335.17 -10.32 -40.47 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.99 Total: 1.55 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.75 Total: -18.14 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.34 Total: -8.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.22 Total: -5.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.15 -10.32 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719988797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.156 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds