Wall clock time and date at job start Mon Mar 30 2020 04:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47043 * 299.99898 * 3 2 1 6 6 H 1.48496 * 109.47363 * 60.00263 * 3 2 1 7 7 C 1.37882 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99896 * 178.59067 * 7 2 1 9 9 C 1.50698 * 120.00183 * 358.59788 * 7 2 1 10 10 C 1.52993 * 115.55212 * 84.94554 * 9 7 2 11 11 O 1.42905 * 109.47026 * 39.89436 * 10 9 7 12 12 C 1.42897 * 114.00064 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46903 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46796 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.78971 * 54.51027 * 14 13 12 16 16 C 1.53250 * 109.62996 * 174.99700 * 14 13 12 17 17 N 1.46463 * 109.85898 * 181.70802 * 16 14 13 18 18 C 1.46467 * 112.56410 * 287.34227 * 17 16 14 19 19 C 1.53257 * 109.85394 * 72.65746 * 18 17 16 20 20 S 1.81892 * 108.50612 * 297.99689 * 19 18 17 21 21 C 1.52993 * 117.51676 * 230.65429 * 9 7 2 22 22 C 1.52995 * 60.00426 * 107.47771 * 21 9 7 23 23 H 0.97001 * 119.99220 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47606 * 279.89831 * 10 9 7 25 25 H 1.09000 * 109.47129 * 159.89302 * 10 9 7 26 26 H 1.08998 * 109.47119 * 60.00431 * 12 11 10 27 27 H 1.08999 * 109.47228 * 299.99609 * 12 11 10 28 28 H 1.08998 * 109.47050 * 60.00182 * 13 12 11 29 29 H 1.08999 * 109.46690 * 299.99731 * 13 12 11 30 30 H 1.09002 * 109.40786 * 301.82948 * 16 14 13 31 31 H 1.09004 * 109.40603 * 61.59271 * 16 14 13 32 32 H 1.00898 * 111.00355 * 52.45859 * 17 16 14 33 33 H 1.08996 * 109.40649 * 312.54304 * 18 17 16 34 34 H 1.09002 * 109.40834 * 192.77649 * 18 17 16 35 35 H 1.09001 * 109.62387 * 178.29177 * 19 18 17 36 36 H 1.08996 * 109.79197 * 57.80371 * 19 18 17 37 37 H 1.09002 * 117.50132 * 214.97004 * 21 9 7 38 38 H 1.09002 * 117.50011 * 359.97438 * 21 9 7 39 39 H 1.09003 * 117.49976 * 252.51329 * 22 21 9 40 40 H 1.09003 * 117.50393 * 107.48804 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0843 -1.1943 -0.0225 9 6 1.2514 -2.4990 0.0331 10 6 0.7872 -3.0270 -1.3258 11 8 1.8091 -2.8013 -2.2989 12 6 1.4748 -3.2608 -3.6100 13 6 2.6351 -2.9694 -4.5638 14 6 2.2774 -3.4619 -5.9675 15 1 1.3304 -3.0234 -6.2824 16 6 3.3824 -3.0612 -6.9509 17 7 3.0258 -3.4948 -8.3037 18 6 3.1367 -4.9450 -8.4766 19 6 1.9924 -5.6464 -7.7368 20 16 2.1393 -5.2757 -5.9621 21 6 1.6653 -3.5279 1.0870 22 6 0.3487 -2.7637 1.2397 23 1 -0.4849 0.8401 0.0004 24 1 -0.1221 -2.5067 -1.6265 25 1 0.5864 -4.0958 -1.2509 26 1 0.5796 -2.7456 -3.9583 27 1 1.2886 -4.3344 -3.5823 28 1 3.5301 -3.4849 -4.2154 29 1 2.8217 -1.8958 -4.5916 30 1 3.5036 -1.9780 -6.9378 31 1 4.3194 -3.5329 -6.6546 32 1 2.1047 -3.1699 -8.5565 33 1 4.0907 -5.2858 -8.0743 34 1 3.0848 -5.1882 -9.5379 35 1 2.0610 -6.7230 -7.8930 36 1 1.0346 -5.2827 -8.1089 37 1 1.6070 -4.5811 0.8123 38 1 2.4828 -3.2614 1.7568 39 1 0.2999 -1.9942 2.0102 40 1 -0.5759 -3.3140 1.0655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719988797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:54 Heat of formation + Delta-G solvation = -46.861659 kcal Electronic energy + Delta-G solvation = -18803.218610 eV Core-core repulsion = 15936.779676 eV Total energy + Delta-G solvation = -2866.438934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39952 -38.68898 -37.49902 -34.81738 -33.94398 -31.08100 -28.81208 -27.64927 -26.73131 -24.22792 -22.94173 -22.88121 -22.52773 -21.03834 -18.47977 -18.16416 -17.17143 -17.12586 -16.64121 -16.16841 -15.84859 -15.73596 -15.37294 -15.29358 -14.93963 -14.58956 -14.05717 -13.71925 -13.63410 -13.21414 -12.88559 -12.84655 -12.70223 -12.67539 -12.36629 -12.30315 -12.04051 -11.98563 -11.62966 -11.32790 -11.02043 -10.86407 -10.45816 -10.38409 -9.88689 -9.71445 -8.67336 -8.07070 -6.15323 0.63274 1.40548 1.42530 1.49088 1.54300 2.45668 2.77041 3.16730 3.22902 3.47927 3.64430 3.80423 3.88530 4.07550 4.11537 4.22104 4.25244 4.40751 4.45340 4.47359 4.48412 4.55504 4.58368 4.71968 4.82253 4.89025 4.92959 4.95304 4.97816 5.01152 5.10699 5.21933 5.54644 5.62136 5.80531 5.87569 6.27716 6.37137 6.63733 6.88132 7.50906 9.02495 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.004185 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.237330 B = 6688.890420 C = 7504.161251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.486 4.486 8 H 0.045 0.955 9 C 0.005 3.995 10 C 0.122 3.878 11 O -0.386 6.386 12 C 0.059 3.941 13 C -0.087 4.087 14 C -0.065 4.065 15 H 0.092 0.908 16 C 0.069 3.931 17 N -0.691 5.691 18 C 0.060 3.940 19 C -0.111 4.111 20 S -0.312 6.312 21 C -0.189 4.189 22 C -0.150 4.150 23 H 0.258 0.742 24 H 0.022 0.978 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.351 0.649 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -9.281 -17.398 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.005 3.995 10 C 0.045 3.955 11 O -0.305 6.305 12 C -0.018 4.018 13 C -0.126 4.126 14 C -0.196 4.196 15 H 0.111 0.889 16 C -0.063 4.063 17 N -0.320 5.320 18 C -0.071 4.071 19 C -0.261 4.261 20 S -0.087 6.087 21 C -0.226 4.226 22 C -0.187 4.187 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.170 0.830 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.035 -9.671 -16.749 19.758 hybrid contribution -1.114 1.268 -0.132 1.693 sum 2.921 -8.403 -16.882 19.083 Atomic orbital electron populations 1.70114 1.06915 1.26752 1.51392 1.25613 0.95605 1.01730 0.94628 0.85643 0.79155 0.80139 0.77535 1.19457 1.20692 1.20557 1.20519 0.91945 0.89956 1.49984 0.93691 1.18960 0.99716 0.94372 0.86444 1.21811 0.89051 0.95503 0.89140 1.87964 1.42146 1.82691 1.17687 1.22519 0.97559 0.97736 0.84006 1.21184 0.98087 1.02495 0.90862 1.23944 1.03888 0.92398 0.99348 0.88925 1.22259 0.96193 1.02361 0.85482 1.60090 1.34920 1.12938 1.24079 1.22280 0.97076 0.86055 1.01654 1.24365 1.03530 1.06528 0.91696 1.87549 1.97169 1.09867 1.14067 1.23082 0.98185 0.96386 1.04912 1.22401 0.92767 1.01364 1.02192 0.93324 0.95952 0.94742 0.94570 0.93514 0.90754 0.89573 0.88449 0.89901 0.82989 0.90212 0.87272 0.86068 0.89042 0.89121 0.90348 0.91773 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 12.80 21.45 0.27 -52.96 16 2 C 0.02 1.32 5.41 84.65 0.46 1.77 16 3 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.49 -27.81 8.24 25.60 0.21 -27.59 16 8 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.01 0.28 1.81 -52.93 -0.10 0.19 16 10 C 0.12 5.82 6.01 71.98 0.43 6.26 16 11 O -0.39 -17.98 9.73 -148.98 -1.45 -19.43 16 12 C 0.06 2.12 5.78 71.98 0.42 2.53 16 13 C -0.09 -2.52 5.06 30.60 0.15 -2.37 16 14 C -0.07 -1.44 2.67 30.68 0.08 -1.36 16 15 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 16 C 0.07 1.24 5.71 86.47 0.49 1.73 16 17 N -0.69 -10.34 6.70 -515.03 -3.45 -13.79 16 18 C 0.06 0.77 6.42 86.47 0.56 1.32 16 19 C -0.11 -1.59 6.59 72.07 0.47 -1.12 16 20 S -0.31 -7.25 20.65 -56.49 -1.17 -8.42 16 21 C -0.19 -8.40 9.88 30.59 0.30 -8.10 16 22 C -0.15 -7.20 9.33 30.59 0.29 -6.91 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.03 1.48 7.95 -2.39 -0.02 1.46 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.64 7.19 -2.39 -0.02 1.62 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.60 7.92 -2.38 -0.02 1.58 16 32 H 0.35 4.54 8.65 -89.70 -0.78 3.76 16 33 H 0.08 1.15 7.91 -2.39 -0.02 1.13 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 3.53 8.08 -2.39 -0.02 3.51 16 38 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.06 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -64.34 335.17 0.23 -64.11 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.23 Total: 17.33 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 3.77 Total: -33.64 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -3.18 Total: -66.76 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.45 Total: -19.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -1.17 Total: -8.42 kcal Total: -64.34 0.23 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719988797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.253 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds