Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48508 * 109.47032 * 274.99548 * 3 2 1 5 5 H 1.48498 * 109.47188 * 34.99335 * 3 2 1 6 6 H 1.48498 * 109.47094 * 154.99806 * 3 2 1 7 7 C 1.37878 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99763 * 169.47285 * 7 2 1 9 9 C 1.50699 * 120.00184 * 349.46574 * 7 2 1 10 10 C 1.52999 * 115.54707 * 324.52878 * 9 7 2 11 11 N 1.46893 * 109.47593 * 292.01427 * 10 9 7 12 12 C 1.46469 * 110.99995 * 309.30494 * 11 10 9 13 13 C 1.53248 * 109.86107 * 162.22927 * 12 11 10 14 14 S 1.81900 * 108.50419 * 62.00596 * 13 12 11 15 15 C 1.81894 * 101.91293 * 308.69470 * 14 13 12 16 16 H 1.09007 * 109.79560 * 291.50404 * 15 14 13 17 17 C 1.53001 * 109.63054 * 171.01178 * 15 14 13 18 18 C 1.52997 * 109.47239 * 65.98726 * 17 15 14 19 19 O 1.42902 * 109.47034 * 180.02562 * 18 17 15 20 20 C 1.46471 * 111.00397 * 183.32476 * 11 10 9 21 21 C 1.52997 * 117.51879 * 110.23027 * 9 7 2 22 22 C 1.52995 * 60.00157 * 107.48184 * 21 9 7 23 23 H 0.97003 * 119.99920 * 5.00998 * 1 2 3 24 24 H 1.09008 * 109.46759 * 172.01684 * 10 9 7 25 25 H 1.08997 * 109.47268 * 52.02289 * 10 9 7 26 26 H 1.09000 * 109.41126 * 282.35151 * 12 11 10 27 27 H 1.09002 * 109.40751 * 42.11254 * 12 11 10 28 28 H 1.09007 * 109.63218 * 181.71087 * 13 12 11 29 29 H 1.09001 * 109.63607 * 302.30283 * 13 12 11 30 30 H 1.09005 * 109.47252 * 305.98251 * 17 15 14 31 31 H 1.09007 * 109.46776 * 185.98608 * 17 15 14 32 32 H 1.09002 * 109.47551 * 60.00098 * 18 17 15 33 33 H 1.09000 * 109.47367 * 299.99976 * 18 17 15 34 34 H 0.96706 * 114.00089 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.40572 * 77.64831 * 20 11 10 36 36 H 1.09002 * 109.40261 * 317.88452 * 20 11 10 37 37 H 1.08998 * 117.50068 * 214.97522 * 21 9 7 38 38 H 1.09001 * 117.49888 * 359.97438 * 21 9 7 39 39 H 1.09001 * 117.50188 * 252.51624 * 22 21 9 40 40 H 1.09005 * 117.51773 * 107.48027 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0708 -1.2019 -0.1714 9 6 1.2700 -2.4883 0.2375 10 6 0.1099 -2.4152 1.2323 11 7 0.6361 -2.1664 2.5810 12 6 1.7050 -3.1123 2.9101 13 6 2.5244 -2.5814 4.0913 14 16 1.4292 -2.4406 5.5368 15 6 0.0358 -1.4868 4.8606 16 1 0.3580 -0.4694 4.6385 17 6 -1.1063 -1.4537 5.8781 18 6 -0.6668 -0.6639 7.1126 19 8 -1.7333 -0.6335 8.0632 20 6 -0.4411 -2.1683 3.5735 21 6 1.1268 -3.4477 -0.9456 22 6 2.0865 -3.7816 0.1981 23 1 -0.4850 0.8369 -0.0734 24 1 -0.4360 -3.3587 1.2237 25 1 -0.5613 -1.6046 0.9489 26 1 1.2678 -4.0747 3.1760 27 1 2.3562 -3.2382 2.0451 28 1 3.3371 -3.2732 4.3135 29 1 2.9316 -1.6012 3.8435 30 1 -1.3622 -2.4722 6.1704 31 1 -1.9773 -0.9742 5.4312 32 1 -0.4109 0.3546 6.8203 33 1 0.2042 -1.1433 7.5595 34 1 -1.5247 -0.1477 8.8730 35 1 -0.7292 -3.1963 3.7933 36 1 -1.3010 -1.6295 3.1755 37 1 0.2061 -4.0269 -1.0153 38 1 1.5635 -3.1428 -1.8966 39 1 3.1550 -3.6963 -0.0002 40 1 1.7975 -4.5803 0.8813 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720059120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -15.651287 kcal Electronic energy + Delta-G solvation = -19802.808536 eV Core-core repulsion = 16937.722985 eV Total energy + Delta-G solvation = -2865.085551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.37762 -37.18810 -35.64065 -33.31890 -32.18505 -30.27184 -28.00317 -25.65125 -24.31102 -23.29665 -21.38850 -21.21835 -20.27268 -18.95906 -17.40960 -16.61447 -16.19089 -15.40371 -14.77667 -14.67802 -14.36552 -14.04922 -13.78588 -13.64615 -13.28657 -13.02833 -12.60079 -12.13760 -11.65553 -11.58122 -11.43627 -11.25817 -11.19480 -10.97674 -10.92650 -10.51418 -10.47430 -10.29661 -10.04494 -10.00459 -9.44685 -9.23043 -9.09974 -8.57852 -8.05225 -7.48531 -7.27343 -5.98732 -4.04542 2.11947 2.86212 3.27502 3.36055 3.40088 4.02597 4.38163 4.60286 4.98581 5.03962 5.09619 5.34820 5.44008 5.48238 5.53030 5.57411 5.66381 5.73492 5.81561 5.92454 6.04923 6.07773 6.14069 6.26519 6.30355 6.40690 6.44826 6.59192 6.60784 6.69699 6.89024 7.12867 7.27302 7.54861 7.59243 7.95167 8.05638 8.11755 8.46287 8.89537 9.56191 10.99939 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.006436 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.133473 B = 4349.188749 C = 4999.121688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.082 3.918 3 Si 0.893 3.107 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.475 4.475 8 H 0.056 0.944 9 C 0.063 3.937 10 C 0.089 3.911 11 N -0.522 5.522 12 C 0.040 3.960 13 C -0.065 4.065 14 S -0.298 6.298 15 C -0.031 4.031 16 H 0.097 0.903 17 C -0.099 4.099 18 C 0.075 3.925 19 O -0.577 6.577 20 C 0.066 3.934 21 C -0.203 4.203 22 C -0.222 4.222 23 H 0.260 0.740 24 H -0.012 1.012 25 H 0.139 0.861 26 H 0.025 0.975 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.377 0.623 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -2.440 10.275 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.120 4.120 3 Si 0.721 3.279 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.062 3.938 10 C -0.037 4.037 11 N -0.245 5.245 12 C -0.089 4.089 13 C -0.214 4.214 14 S -0.072 6.072 15 C -0.160 4.160 16 H 0.115 0.885 17 C -0.138 4.138 18 C -0.002 4.002 19 O -0.382 6.382 20 C -0.064 4.064 21 C -0.242 4.242 22 C -0.260 4.260 23 H 0.071 0.929 24 H 0.006 0.994 25 H 0.156 0.844 26 H 0.043 0.957 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.224 0.776 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.535 -2.587 10.917 11.232 hybrid contribution 0.393 0.756 -0.831 1.190 sum -0.142 -1.831 10.086 10.252 Atomic orbital electron populations 1.69563 1.06042 1.26415 1.49618 1.24795 0.94626 0.98761 0.93826 0.86572 0.80115 0.83508 0.77710 1.21065 1.21110 1.19876 1.20361 0.93598 0.89036 1.48192 0.92551 1.19006 0.93707 0.88363 0.92721 1.22132 0.97567 0.99447 0.84539 1.60946 1.09947 1.51120 1.02481 1.22659 0.95555 0.92348 0.98351 1.23561 0.98363 1.05346 0.94109 1.86451 1.23709 1.73904 1.23184 1.23140 0.94471 1.01666 0.96769 0.88476 1.21321 0.97289 1.01683 0.93504 1.22243 0.89205 0.99179 0.89607 1.86447 1.41554 1.78841 1.31384 1.22112 0.94920 0.98408 0.90966 1.23021 0.99069 1.07327 0.94739 1.23019 0.96991 1.02626 1.03334 0.92926 0.99417 0.84397 0.95690 0.86385 0.88646 0.88987 0.90547 0.89929 0.93501 0.92694 0.77634 0.94858 0.90028 0.91881 0.90342 0.90523 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.21 10.57 55.43 0.59 -22.62 16 2 C 0.08 2.14 5.25 -17.82 -0.09 2.04 16 3 Si 0.89 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.47 -12.29 8.99 -34.44 -0.31 -12.60 16 8 H 0.06 1.48 7.84 -52.49 -0.41 1.07 16 9 C 0.06 1.47 1.31 -155.66 -0.20 1.27 16 10 C 0.09 2.01 4.53 -3.83 -0.02 1.99 16 11 N -0.52 -10.58 4.46 -235.04 -1.05 -11.63 16 12 C 0.04 0.74 4.44 -3.93 -0.02 0.72 16 13 C -0.07 -1.08 6.69 37.29 0.25 -0.83 16 14 S -0.30 -4.74 20.65 -107.50 -2.22 -6.96 16 15 C -0.03 -0.49 2.76 -26.60 -0.07 -0.57 16 16 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 17 C -0.10 -1.36 5.06 -26.73 -0.14 -1.50 16 18 C 0.08 0.94 6.89 37.16 0.26 1.19 16 19 O -0.58 -6.92 13.66 -35.23 -0.48 -7.40 16 20 C 0.07 1.17 4.71 -3.93 -0.02 1.15 16 21 C -0.20 -4.46 9.91 -26.74 -0.26 -4.73 16 22 C -0.22 -4.58 7.32 -26.73 -0.20 -4.77 16 23 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 24 H -0.01 -0.27 8.07 -51.92 -0.42 -0.69 16 25 H 0.14 3.47 5.26 -51.93 -0.27 3.20 16 26 H 0.02 0.46 7.92 -51.93 -0.41 0.05 16 27 H 0.12 2.33 3.89 -51.93 -0.20 2.13 16 28 H 0.10 1.38 8.14 -51.92 -0.42 0.95 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.69 7.19 -51.93 -0.37 0.32 16 34 H 0.38 2.69 9.12 45.56 0.42 3.11 16 35 H 0.03 0.58 7.91 -51.93 -0.41 0.17 16 36 H 0.08 1.46 7.95 -51.93 -0.41 1.04 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.29 7.23 -51.93 -0.38 0.92 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -27.29 322.07 -9.97 -37.27 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.81 Total: 7.50 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.83 Total: -16.63 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: -0.46 Total: -34.25 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.48 Total: -7.40 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.22 Total: -6.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.29 -9.97 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720059120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.615 kcal (2) G-P(sol) polarization free energy of solvation -27.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds