Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48508 * 109.47032 * 274.99548 * 3 2 1 5 5 H 1.48498 * 109.47188 * 34.99335 * 3 2 1 6 6 H 1.48498 * 109.47094 * 154.99806 * 3 2 1 7 7 C 1.37878 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99763 * 169.47285 * 7 2 1 9 9 C 1.50699 * 120.00184 * 349.46574 * 7 2 1 10 10 C 1.52999 * 115.54707 * 324.52878 * 9 7 2 11 11 N 1.46893 * 109.47593 * 292.01427 * 10 9 7 12 12 C 1.46469 * 110.99995 * 309.30494 * 11 10 9 13 13 C 1.53248 * 109.86107 * 162.22927 * 12 11 10 14 14 S 1.81900 * 108.50419 * 62.00596 * 13 12 11 15 15 C 1.81894 * 101.91293 * 308.69470 * 14 13 12 16 16 H 1.09007 * 109.79560 * 291.50404 * 15 14 13 17 17 C 1.53001 * 109.63054 * 171.01178 * 15 14 13 18 18 C 1.52997 * 109.47239 * 65.98726 * 17 15 14 19 19 O 1.42902 * 109.47034 * 180.02562 * 18 17 15 20 20 C 1.46471 * 111.00397 * 183.32476 * 11 10 9 21 21 C 1.52997 * 117.51879 * 110.23027 * 9 7 2 22 22 C 1.52995 * 60.00157 * 107.48184 * 21 9 7 23 23 H 0.97003 * 119.99920 * 5.00998 * 1 2 3 24 24 H 1.09008 * 109.46759 * 172.01684 * 10 9 7 25 25 H 1.08997 * 109.47268 * 52.02289 * 10 9 7 26 26 H 1.09000 * 109.41126 * 282.35151 * 12 11 10 27 27 H 1.09002 * 109.40751 * 42.11254 * 12 11 10 28 28 H 1.09007 * 109.63218 * 181.71087 * 13 12 11 29 29 H 1.09001 * 109.63607 * 302.30283 * 13 12 11 30 30 H 1.09005 * 109.47252 * 305.98251 * 17 15 14 31 31 H 1.09007 * 109.46776 * 185.98608 * 17 15 14 32 32 H 1.09002 * 109.47551 * 60.00098 * 18 17 15 33 33 H 1.09000 * 109.47367 * 299.99976 * 18 17 15 34 34 H 0.96706 * 114.00089 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.40572 * 77.64831 * 20 11 10 36 36 H 1.09002 * 109.40261 * 317.88452 * 20 11 10 37 37 H 1.08998 * 117.50068 * 214.97522 * 21 9 7 38 38 H 1.09001 * 117.49888 * 359.97438 * 21 9 7 39 39 H 1.09001 * 117.50188 * 252.51624 * 22 21 9 40 40 H 1.09005 * 117.51773 * 107.48027 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0708 -1.2019 -0.1714 9 6 1.2700 -2.4883 0.2375 10 6 0.1099 -2.4152 1.2323 11 7 0.6361 -2.1664 2.5810 12 6 1.7050 -3.1123 2.9101 13 6 2.5244 -2.5814 4.0913 14 16 1.4292 -2.4406 5.5368 15 6 0.0358 -1.4868 4.8606 16 1 0.3580 -0.4694 4.6385 17 6 -1.1063 -1.4537 5.8781 18 6 -0.6668 -0.6639 7.1126 19 8 -1.7333 -0.6335 8.0632 20 6 -0.4411 -2.1683 3.5735 21 6 1.1268 -3.4477 -0.9456 22 6 2.0865 -3.7816 0.1981 23 1 -0.4850 0.8369 -0.0734 24 1 -0.4360 -3.3587 1.2237 25 1 -0.5613 -1.6046 0.9489 26 1 1.2678 -4.0747 3.1760 27 1 2.3562 -3.2382 2.0451 28 1 3.3371 -3.2732 4.3135 29 1 2.9316 -1.6012 3.8435 30 1 -1.3622 -2.4722 6.1704 31 1 -1.9773 -0.9742 5.4312 32 1 -0.4109 0.3546 6.8203 33 1 0.2042 -1.1433 7.5595 34 1 -1.5247 -0.1477 8.8730 35 1 -0.7292 -3.1963 3.7933 36 1 -1.3010 -1.6295 3.1755 37 1 0.2061 -4.0269 -1.0153 38 1 1.5635 -3.1428 -1.8966 39 1 3.1550 -3.6963 -0.0002 40 1 1.7975 -4.5803 0.8813 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720059120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -32.762475 kcal Electronic energy + Delta-G solvation = -19803.550533 eV Core-core repulsion = 16937.722985 eV Total energy + Delta-G solvation = -2865.827548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97895 -38.24134 -37.14973 -34.57469 -34.12419 -31.71914 -29.31834 -27.56534 -25.91888 -24.61335 -22.95906 -22.46062 -21.77528 -20.78207 -18.45266 -18.01804 -17.82537 -16.66656 -16.59316 -16.08216 -15.90748 -15.50066 -15.22069 -15.06976 -14.60717 -14.51252 -14.03292 -13.67638 -13.20935 -12.97459 -12.96386 -12.82585 -12.72175 -12.60620 -12.28721 -12.19359 -12.10066 -11.92149 -11.61390 -11.17024 -11.00020 -10.97316 -10.69539 -10.25274 -9.90559 -8.99818 -8.61418 -7.93619 -6.05175 0.83777 1.42250 1.47337 1.54825 1.55489 2.46863 2.82144 3.12475 3.39933 3.71479 3.78153 3.98567 4.07810 4.18022 4.22286 4.31987 4.34765 4.38158 4.51144 4.54733 4.62424 4.68051 4.71005 4.79588 4.84873 4.90022 4.99876 5.03616 5.06032 5.13897 5.15178 5.43310 5.54219 5.66254 6.16105 6.34059 6.46911 6.61708 6.86883 6.92564 7.56706 9.02168 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.006436 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.133473 B = 4349.188749 C = 4999.121688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.488 4.488 8 H 0.045 0.955 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.537 5.537 12 C 0.044 3.956 13 C -0.065 4.065 14 S -0.280 6.280 15 C -0.026 4.026 16 H 0.083 0.917 17 C -0.094 4.094 18 C 0.082 3.918 19 O -0.590 6.590 20 C 0.068 3.932 21 C -0.207 4.207 22 C -0.193 4.193 23 H 0.259 0.741 24 H -0.011 1.011 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.398 0.602 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -2.860 11.628 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.155 4.155 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.034 3.966 10 C -0.027 4.027 11 N -0.260 5.260 12 C -0.085 4.085 13 C -0.214 4.214 14 S -0.054 6.054 15 C -0.155 4.155 16 H 0.101 0.899 17 C -0.133 4.133 18 C 0.004 3.996 19 O -0.399 6.399 20 C -0.062 4.062 21 C -0.246 4.246 22 C -0.230 4.230 23 H 0.069 0.931 24 H 0.007 0.993 25 H 0.129 0.871 26 H 0.049 0.951 27 H 0.124 0.876 28 H 0.138 0.862 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.248 0.752 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.066 -3.006 12.289 12.652 hybrid contribution 0.240 0.864 -1.237 1.528 sum 0.174 -2.142 11.052 11.259 Atomic orbital electron populations 1.69707 1.06764 1.26669 1.50294 1.25323 0.95254 1.00974 0.93951 0.85810 0.79022 0.80746 0.77541 1.20854 1.21201 1.19896 1.20535 0.93226 0.90499 1.48239 0.93658 1.19063 0.94973 0.88589 0.93946 1.21811 0.96843 0.98262 0.85756 1.60890 1.11013 1.52052 1.02083 1.22597 0.94938 0.92319 0.98653 1.23524 0.98924 1.05106 0.93840 1.86393 1.23110 1.73628 1.22244 1.23050 0.95341 1.00619 0.96511 0.89857 1.21264 0.96437 1.01945 0.93682 1.22101 0.89153 0.99185 0.89176 1.86391 1.41541 1.79486 1.32484 1.22125 0.94141 0.98758 0.91154 1.23026 1.00046 1.07085 0.94433 1.22962 0.96781 1.01173 1.02125 0.93135 0.99316 0.87122 0.95143 0.87641 0.86181 0.90432 0.90710 0.89766 0.92919 0.92692 0.75157 0.94385 0.90827 0.90938 0.91135 0.90131 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.90 10.57 21.45 0.23 -47.68 16 2 C 0.05 2.37 5.25 84.65 0.44 2.81 16 3 Si 0.94 42.49 29.55 68.60 2.03 44.51 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.49 -25.35 8.99 25.60 0.23 -25.12 16 8 H 0.05 2.39 7.84 -2.91 -0.02 2.37 16 9 C 0.03 1.63 1.31 -52.93 -0.07 1.56 16 10 C 0.10 4.51 4.53 86.30 0.39 4.90 16 11 N -0.54 -21.54 4.46 -897.53 -4.00 -25.55 16 12 C 0.04 1.56 4.44 86.47 0.38 1.95 16 13 C -0.07 -2.05 6.69 72.07 0.48 -1.57 16 14 S -0.28 -8.33 20.65 -56.49 -1.17 -9.49 16 15 C -0.03 -0.79 2.76 30.68 0.08 -0.70 16 16 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 17 C -0.09 -2.46 5.06 30.59 0.15 -2.30 16 18 C 0.08 1.87 6.89 71.98 0.50 2.37 16 19 O -0.59 -12.84 13.66 -148.98 -2.04 -14.88 16 20 C 0.07 2.36 4.71 86.47 0.41 2.77 16 21 C -0.21 -8.98 9.91 30.59 0.30 -8.67 16 22 C -0.19 -7.68 7.32 30.59 0.22 -7.46 16 23 H 0.26 13.36 8.32 -92.71 -0.77 12.59 16 24 H -0.01 -0.49 8.07 -2.38 -0.02 -0.51 16 25 H 0.11 5.68 5.26 -2.39 -0.01 5.66 16 26 H 0.03 1.05 7.92 -2.39 -0.02 1.03 16 27 H 0.11 4.02 3.89 -2.39 -0.01 4.01 16 28 H 0.12 3.15 8.14 -2.38 -0.02 3.13 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 31 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.26 7.19 -2.39 -0.02 1.24 16 34 H 0.40 4.71 9.12 -74.05 -0.68 4.03 16 35 H 0.04 1.28 7.91 -2.39 -0.02 1.27 16 36 H 0.07 2.65 7.95 -2.39 -0.02 2.63 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.09 3.08 7.23 -2.38 -0.02 3.07 16 Total: -1.00 -56.70 322.07 -1.08 -57.77 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.34 Total: 24.77 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.53 Total: -29.46 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -3.78 Total: -73.22 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -2.04 Total: -14.88 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.17 Total: -9.49 kcal Total: -56.70 -1.08 -57.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720059120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.008 kcal (2) G-P(sol) polarization free energy of solvation -56.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds