Wall clock time and date at job start Mon Mar 30 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47245 * 239.99919 * 3 2 1 5 5 H 1.48498 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47083 * 120.00091 * 3 2 1 7 7 C 1.37872 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 171.29125 * 7 2 1 9 9 C 1.50702 * 120.00277 * 351.27749 * 7 2 1 10 10 C 1.53003 * 115.54947 * 295.86658 * 9 7 2 11 11 N 1.46900 * 109.46640 * 268.87765 * 10 9 7 12 12 C 1.46464 * 111.00145 * 49.42438 * 11 10 9 13 13 C 1.53250 * 109.85829 * 197.76646 * 12 11 10 14 14 S 1.81993 * 108.65497 * 298.11167 * 13 12 11 15 15 C 1.81906 * 101.87732 * 51.03843 * 14 13 12 16 16 H 1.08999 * 109.63048 * 68.75992 * 15 14 13 17 17 C 1.52999 * 109.63310 * 189.15180 * 15 14 13 18 18 C 1.53000 * 109.47116 * 294.61024 * 17 15 14 19 19 O 1.42901 * 109.46731 * 179.97438 * 18 17 15 20 20 C 1.46468 * 110.99629 * 175.40782 * 11 10 9 21 21 C 1.53001 * 117.51500 * 81.56101 * 9 7 2 22 22 C 1.52997 * 117.49958 * 150.18861 * 9 7 2 23 23 H 0.96998 * 119.99809 * 5.16344 * 1 2 3 24 24 H 1.09006 * 109.46588 * 148.88182 * 10 9 7 25 25 H 1.08995 * 109.47597 * 28.87783 * 10 9 7 26 26 H 1.09004 * 109.40402 * 317.88200 * 12 11 10 27 27 H 1.08999 * 109.40863 * 77.64713 * 12 11 10 28 28 H 1.09000 * 109.63652 * 57.70070 * 13 12 11 29 29 H 1.08999 * 109.62732 * 178.29392 * 13 12 11 30 30 H 1.09000 * 109.46850 * 54.60933 * 17 15 14 31 31 H 1.08995 * 109.47405 * 174.60616 * 17 15 14 32 32 H 1.09000 * 109.47187 * 299.99703 * 18 17 15 33 33 H 1.08997 * 109.46879 * 59.99836 * 18 17 15 34 34 H 0.96701 * 113.99677 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.41204 * 42.11357 * 20 11 10 36 36 H 1.09004 * 109.33924 * 282.31077 * 20 11 10 37 37 H 1.09001 * 117.49840 * 214.97619 * 21 9 7 38 38 H 1.08997 * 117.49710 * 359.97438 * 21 9 7 39 39 H 1.08999 * 117.49853 * 359.97438 * 22 9 7 40 40 H 1.09001 * 117.49402 * 145.00552 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0752 -1.1993 -0.1422 9 6 1.2641 -2.4917 0.1968 10 6 0.5845 -2.6635 1.5568 11 7 1.5102 -3.3239 2.4868 12 6 2.8200 -2.6685 2.4775 13 6 3.8730 -3.6009 3.0861 14 16 3.4210 -3.9389 4.8163 15 6 1.6851 -4.4582 4.6551 16 1 1.6369 -5.4231 4.1505 17 6 1.0516 -4.5719 6.0432 18 6 1.7301 -5.7001 6.8226 19 8 1.1387 -5.8058 8.1192 20 6 0.9333 -3.4078 3.8304 21 6 0.5691 -3.1014 -1.0223 22 6 1.8423 -3.7430 -0.4672 23 1 -0.4850 0.8366 -0.0756 24 1 -0.3111 -3.2739 1.4408 25 1 0.3090 -1.6855 1.9515 26 1 3.0980 -2.4293 1.4510 27 1 2.7693 -1.7494 3.0613 28 1 3.8996 -4.5370 2.5282 29 1 4.8513 -3.1216 3.0497 30 1 1.1800 -3.6315 6.5792 31 1 -0.0116 -4.7893 5.9406 32 1 1.6016 -6.6404 6.2865 33 1 2.7932 -5.4826 6.9251 34 1 1.5205 -6.5030 8.6699 35 1 -0.1171 -3.6891 3.7567 36 1 1.0148 -2.4371 4.3196 37 1 -0.3723 -3.6249 -0.8554 38 1 0.6469 -2.5637 -1.9672 39 1 2.7580 -3.6275 -1.0471 40 1 1.7385 -4.6886 0.0650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720059124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:47 Heat of formation + Delta-G solvation = -27.217877 kcal Electronic energy + Delta-G solvation = -19572.003843 eV Core-core repulsion = 16706.416727 eV Total energy + Delta-G solvation = -2865.587116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.32371 -37.23834 -35.67840 -33.43542 -32.08354 -30.32693 -28.18834 -25.79137 -24.36880 -23.17364 -21.40324 -21.03904 -20.58524 -18.74273 -17.48656 -16.71559 -16.24718 -15.49134 -14.85186 -14.72551 -14.45690 -14.12806 -13.90712 -13.57415 -13.49356 -12.82683 -12.71304 -12.16035 -11.64579 -11.63169 -11.56821 -11.29264 -11.18331 -11.04886 -10.95930 -10.89239 -10.52484 -10.22610 -10.09184 -10.04493 -9.41007 -9.29211 -8.93205 -8.54294 -8.19221 -7.62595 -7.38097 -6.12002 -4.16759 2.02845 2.79015 3.23962 3.29942 3.32387 3.93405 4.32117 4.53273 4.87391 4.98423 5.10958 5.25343 5.33350 5.38028 5.49647 5.50210 5.56179 5.66853 5.83248 5.84596 5.96338 6.00630 6.13189 6.21339 6.39818 6.48351 6.53481 6.69250 6.79278 6.82296 7.02310 7.09772 7.38982 7.47761 7.47995 7.74351 7.83813 7.91882 8.35652 8.81738 9.46329 10.95279 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.005131 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.584489 B = 5456.028386 C = 5673.025845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.049 3.951 10 C 0.108 3.892 11 N -0.546 5.546 12 C 0.052 3.948 13 C -0.067 4.067 14 S -0.295 6.295 15 C -0.032 4.032 16 H 0.093 0.907 17 C -0.100 4.100 18 C 0.076 3.924 19 O -0.577 6.577 20 C 0.060 3.940 21 C -0.174 4.174 22 C -0.195 4.195 23 H 0.262 0.738 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.126 0.874 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.378 0.622 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -9.363 9.465 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.048 3.952 10 C -0.019 4.019 11 N -0.271 5.271 12 C -0.077 4.077 13 C -0.216 4.216 14 S -0.069 6.069 15 C -0.161 4.161 16 H 0.112 0.888 17 C -0.139 4.139 18 C -0.002 4.002 19 O -0.382 6.382 20 C -0.070 4.070 21 C -0.213 4.213 22 C -0.232 4.232 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.224 0.776 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.468 -9.095 10.060 13.999 hybrid contribution -0.088 1.137 -0.735 1.356 sum 3.380 -7.959 9.325 12.717 Atomic orbital electron populations 1.69964 1.05910 1.26981 1.48229 1.24956 0.94751 0.98831 0.94464 0.86769 0.79825 0.83355 0.78825 1.20171 1.21242 1.20043 1.20441 0.93262 0.89091 1.50901 0.92161 1.18791 0.97258 0.90857 0.88272 1.21605 0.92209 0.96059 0.91990 1.61257 1.04034 1.55382 1.06391 1.22426 0.87709 0.93094 1.04476 1.23656 1.01868 1.03690 0.92380 1.86585 1.15322 1.88991 1.15969 1.23113 0.92973 1.02257 0.97768 0.88826 1.21327 1.00203 0.99518 0.92876 1.22232 0.96723 0.97939 0.83297 1.86454 1.64702 1.59745 1.27291 1.22168 0.98042 0.96788 0.90034 1.22740 0.93589 1.04328 1.00620 1.22771 0.96842 0.97759 1.05859 0.92822 0.93527 0.93259 0.85650 0.94392 0.89589 0.88326 0.90346 0.90019 0.93607 0.92628 0.77571 0.90490 0.93909 0.92069 0.90519 0.91100 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.78 12.68 55.43 0.70 -23.08 16 2 C 0.07 1.93 5.16 -17.82 -0.09 1.83 16 3 Si 0.88 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.63 6.97 -34.44 -0.24 -12.87 16 8 H 0.06 1.52 7.42 -52.48 -0.39 1.13 16 9 C 0.05 1.13 0.57 -155.66 -0.09 1.04 16 10 C 0.11 2.35 4.96 -3.82 -0.02 2.33 16 11 N -0.55 -10.17 4.30 -235.03 -1.01 -11.18 16 12 C 0.05 0.97 4.87 -3.93 -0.02 0.95 16 13 C -0.07 -1.05 6.68 37.29 0.25 -0.80 16 14 S -0.29 -4.41 20.64 -107.50 -2.22 -6.63 16 15 C -0.03 -0.45 2.76 -26.60 -0.07 -0.52 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.10 -1.25 5.07 -26.73 -0.14 -1.39 16 18 C 0.08 0.84 6.88 37.16 0.26 1.10 16 19 O -0.58 -6.35 13.66 -35.23 -0.48 -6.83 16 20 C 0.06 0.97 4.72 -3.93 -0.02 0.96 16 21 C -0.17 -3.94 9.88 -26.73 -0.26 -4.20 16 22 C -0.19 -4.06 9.27 -26.73 -0.25 -4.31 16 23 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 24 H 0.05 1.00 7.87 -51.93 -0.41 0.59 16 25 H 0.05 1.21 7.27 -51.93 -0.38 0.84 16 26 H 0.13 2.60 4.23 -51.93 -0.22 2.38 16 27 H 0.04 0.77 7.91 -51.93 -0.41 0.36 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.64 7.17 -51.93 -0.37 0.27 16 34 H 0.38 2.33 9.12 45.56 0.42 2.75 16 35 H 0.08 1.19 7.96 -51.93 -0.41 0.78 16 36 H 0.04 0.75 7.91 -51.93 -0.41 0.34 16 37 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 38 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -27.35 326.41 -9.75 -37.10 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.94 Total: 6.30 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.69 Total: -15.88 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.31 Total: -34.26 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.48 Total: -6.83 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -2.22 Total: -6.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.35 -9.75 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720059124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.885 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds