Wall clock time and date at job start Mon Mar 30 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47245 * 239.99919 * 3 2 1 5 5 H 1.48498 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47083 * 120.00091 * 3 2 1 7 7 C 1.37872 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 171.29125 * 7 2 1 9 9 C 1.50702 * 120.00277 * 351.27749 * 7 2 1 10 10 C 1.53003 * 115.54947 * 295.86658 * 9 7 2 11 11 N 1.46900 * 109.46640 * 268.87765 * 10 9 7 12 12 C 1.46464 * 111.00145 * 49.42438 * 11 10 9 13 13 C 1.53250 * 109.85829 * 197.76646 * 12 11 10 14 14 S 1.81993 * 108.65497 * 298.11167 * 13 12 11 15 15 C 1.81906 * 101.87732 * 51.03843 * 14 13 12 16 16 H 1.08999 * 109.63048 * 68.75992 * 15 14 13 17 17 C 1.52999 * 109.63310 * 189.15180 * 15 14 13 18 18 C 1.53000 * 109.47116 * 294.61024 * 17 15 14 19 19 O 1.42901 * 109.46731 * 179.97438 * 18 17 15 20 20 C 1.46468 * 110.99629 * 175.40782 * 11 10 9 21 21 C 1.53001 * 117.51500 * 81.56101 * 9 7 2 22 22 C 1.52997 * 117.49958 * 150.18861 * 9 7 2 23 23 H 0.96998 * 119.99809 * 5.16344 * 1 2 3 24 24 H 1.09006 * 109.46588 * 148.88182 * 10 9 7 25 25 H 1.08995 * 109.47597 * 28.87783 * 10 9 7 26 26 H 1.09004 * 109.40402 * 317.88200 * 12 11 10 27 27 H 1.08999 * 109.40863 * 77.64713 * 12 11 10 28 28 H 1.09000 * 109.63652 * 57.70070 * 13 12 11 29 29 H 1.08999 * 109.62732 * 178.29392 * 13 12 11 30 30 H 1.09000 * 109.46850 * 54.60933 * 17 15 14 31 31 H 1.08995 * 109.47405 * 174.60616 * 17 15 14 32 32 H 1.09000 * 109.47187 * 299.99703 * 18 17 15 33 33 H 1.08997 * 109.46879 * 59.99836 * 18 17 15 34 34 H 0.96701 * 113.99677 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.41204 * 42.11357 * 20 11 10 36 36 H 1.09004 * 109.33924 * 282.31077 * 20 11 10 37 37 H 1.09001 * 117.49840 * 214.97619 * 21 9 7 38 38 H 1.08997 * 117.49710 * 359.97438 * 21 9 7 39 39 H 1.08999 * 117.49853 * 359.97438 * 22 9 7 40 40 H 1.09001 * 117.49402 * 145.00552 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0752 -1.1993 -0.1422 9 6 1.2641 -2.4917 0.1968 10 6 0.5845 -2.6635 1.5568 11 7 1.5102 -3.3239 2.4868 12 6 2.8200 -2.6685 2.4775 13 6 3.8730 -3.6009 3.0861 14 16 3.4210 -3.9389 4.8163 15 6 1.6851 -4.4582 4.6551 16 1 1.6369 -5.4231 4.1505 17 6 1.0516 -4.5719 6.0432 18 6 1.7301 -5.7001 6.8226 19 8 1.1387 -5.8058 8.1192 20 6 0.9333 -3.4078 3.8304 21 6 0.5691 -3.1014 -1.0223 22 6 1.8423 -3.7430 -0.4672 23 1 -0.4850 0.8366 -0.0756 24 1 -0.3111 -3.2739 1.4408 25 1 0.3090 -1.6855 1.9515 26 1 3.0980 -2.4293 1.4510 27 1 2.7693 -1.7494 3.0613 28 1 3.8996 -4.5370 2.5282 29 1 4.8513 -3.1216 3.0497 30 1 1.1800 -3.6315 6.5792 31 1 -0.0116 -4.7893 5.9406 32 1 1.6016 -6.6404 6.2865 33 1 2.7932 -5.4826 6.9251 34 1 1.5205 -6.5030 8.6699 35 1 -0.1171 -3.6891 3.7567 36 1 1.0148 -2.4371 4.3196 37 1 -0.3723 -3.6249 -0.8554 38 1 0.6469 -2.5637 -1.9672 39 1 2.7580 -3.6275 -1.0471 40 1 1.7385 -4.6886 0.0650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720059124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:47 Heat of formation + Delta-G solvation = -44.532218 kcal Electronic energy + Delta-G solvation = -19572.754649 eV Core-core repulsion = 16706.416727 eV Total energy + Delta-G solvation = -2866.337922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88962 -38.20832 -37.19133 -34.60372 -34.05848 -31.73595 -29.45873 -27.67403 -25.92984 -24.41442 -22.79859 -22.46458 -22.08508 -20.51935 -18.45440 -18.04681 -17.86796 -16.75487 -16.48931 -16.15449 -16.01745 -15.62732 -15.16512 -14.92032 -14.77957 -14.41969 -14.00212 -13.66993 -13.18098 -13.05816 -12.95656 -12.84612 -12.73773 -12.66877 -12.49566 -12.33036 -12.02452 -11.94607 -11.47356 -11.22984 -10.95462 -10.83251 -10.53714 -10.40190 -10.00611 -9.20026 -8.62056 -8.11365 -6.19183 0.83629 1.39233 1.42157 1.47107 1.57341 2.40188 2.78685 3.13734 3.34543 3.67872 3.77201 3.99410 4.09123 4.16755 4.25987 4.32523 4.37812 4.40548 4.55251 4.58784 4.65704 4.68136 4.75112 4.78073 4.94933 4.99240 5.02703 5.07993 5.10787 5.16164 5.29536 5.35877 5.61131 5.68500 5.80744 6.17730 6.34142 6.41162 6.85608 6.89990 7.45559 8.95464 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.005131 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.584489 B = 5456.028386 C = 5673.025845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.122 3.878 11 N -0.538 5.538 12 C 0.057 3.943 13 C -0.062 4.062 14 S -0.292 6.292 15 C -0.020 4.020 16 H 0.103 0.897 17 C -0.097 4.097 18 C 0.082 3.918 19 O -0.593 6.593 20 C 0.058 3.942 21 C -0.183 4.183 22 C -0.165 4.165 23 H 0.259 0.741 24 H 0.048 0.952 25 H 0.013 0.987 26 H 0.105 0.895 27 H 0.014 0.986 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -10.910 10.353 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.005 4.005 11 N -0.262 5.262 12 C -0.072 4.072 13 C -0.210 4.210 14 S -0.066 6.066 15 C -0.149 4.149 16 H 0.121 0.879 17 C -0.137 4.137 18 C 0.004 3.996 19 O -0.402 6.402 20 C -0.071 4.071 21 C -0.221 4.221 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.123 0.877 27 H 0.033 0.967 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.249 0.751 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.378 -10.663 10.964 15.908 hybrid contribution -0.370 1.587 -0.973 1.898 sum 4.008 -9.076 9.991 14.080 Atomic orbital electron populations 1.70066 1.07025 1.27264 1.49840 1.25557 0.95355 1.01500 0.94647 0.85934 0.78692 0.80194 0.78832 1.19635 1.21474 1.19862 1.20701 0.93237 0.90253 1.49736 0.92517 1.18845 0.98232 0.91213 0.88999 1.21305 0.92792 0.94422 0.92021 1.61305 1.03532 1.54147 1.07198 1.22290 0.88600 0.93195 1.03109 1.23559 1.01313 1.03327 0.92841 1.86636 1.15889 1.88981 1.15118 1.23054 0.92025 1.01478 0.98374 0.87865 1.21290 1.00745 0.99707 0.91912 1.22116 0.96081 0.97880 0.83533 1.86398 1.65192 1.61084 1.27499 1.22248 0.99019 0.96980 0.88893 1.22699 0.94972 1.04856 0.99600 1.22724 0.95912 0.97279 1.04316 0.93193 0.93346 0.96912 0.87707 0.96749 0.88679 0.86904 0.91658 0.89206 0.92020 0.93023 0.75138 0.89578 0.95501 0.91228 0.92297 0.90721 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.21 12.68 21.45 0.27 -49.94 16 2 C 0.03 1.59 5.16 84.65 0.44 2.03 16 3 Si 0.94 42.16 29.55 68.60 2.03 44.19 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.50 -25.57 6.97 25.60 0.18 -25.39 16 8 H 0.06 2.87 7.42 -2.91 -0.02 2.85 16 9 C 0.03 1.28 0.57 -52.93 -0.03 1.25 16 10 C 0.12 5.33 4.96 86.30 0.43 5.76 16 11 N -0.54 -19.62 4.30 -897.51 -3.86 -23.47 16 12 C 0.06 2.11 4.87 86.47 0.42 2.53 16 13 C -0.06 -1.82 6.68 72.07 0.48 -1.34 16 14 S -0.29 -8.19 20.64 -56.49 -1.17 -9.36 16 15 C -0.02 -0.52 2.76 30.68 0.08 -0.44 16 16 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 17 C -0.10 -2.24 5.07 30.59 0.16 -2.09 16 18 C 0.08 1.60 6.88 71.98 0.50 2.10 16 19 O -0.59 -11.58 13.66 -148.98 -2.04 -13.62 16 20 C 0.06 1.85 4.72 86.47 0.41 2.26 16 21 C -0.18 -8.19 9.88 30.59 0.30 -7.89 16 22 C -0.17 -6.63 9.27 30.59 0.28 -6.34 16 23 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 24 H 0.05 2.07 7.87 -2.38 -0.02 2.05 16 25 H 0.01 0.64 7.27 -2.39 -0.02 0.62 16 26 H 0.11 4.32 4.23 -2.38 -0.01 4.31 16 27 H 0.01 0.59 7.91 -2.39 -0.02 0.57 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.05 7.17 -2.39 -0.02 1.04 16 34 H 0.40 3.85 9.12 -74.06 -0.68 3.18 16 35 H 0.09 2.57 7.96 -2.39 -0.02 2.55 16 36 H 0.03 0.94 7.91 -2.38 -0.02 0.92 16 37 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 38 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -57.95 326.41 -0.78 -58.73 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.34 Total: 21.03 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.64 Total: -27.56 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -3.59 Total: -73.42 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -2.04 Total: -13.62 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.17 Total: -9.36 kcal Total: -57.95 -0.78 -58.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720059124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.200 kcal (2) G-P(sol) polarization free energy of solvation -57.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds