Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39733 * 120.21000 * 238.75642 * 3 2 1 5 5 C 1.37796 * 119.91968 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.82497 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47053 * 89.99522 * 6 5 4 8 8 C 1.38562 * 120.34746 * 0.02562 * 5 4 3 9 9 C 1.38016 * 120.42277 * 359.71663 * 8 5 4 10 10 C 1.38882 * 120.06905 * 0.56012 * 9 8 5 11 11 N 1.39034 * 120.17362 * 179.71814 * 10 9 8 12 12 C 1.46896 * 110.99821 * 63.67903 * 11 10 9 13 13 C 1.50705 * 109.47033 * 162.70327 * 12 11 10 14 14 H 1.08003 * 119.99942 * 354.49234 * 13 12 11 15 15 C 1.37875 * 119.99880 * 174.49638 * 13 12 11 16 16 N 1.31508 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99728 * 179.72428 * 15 13 12 18 18 H 1.48499 * 109.47200 * 59.99986 * 17 15 13 19 19 H 1.48495 * 109.47376 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47193 * 299.99922 * 17 15 13 21 21 C 1.46894 * 110.99827 * 299.72756 * 11 10 9 22 22 C 1.53010 * 117.50046 * 266.45347 * 21 11 10 23 23 C 1.53000 * 59.99921 * 252.50939 * 22 21 11 24 24 H 1.07996 * 120.03820 * 0.02562 * 4 3 2 25 25 H 1.08993 * 109.47237 * 209.99956 * 6 5 4 26 26 H 1.09007 * 109.46741 * 329.99998 * 6 5 4 27 27 H 1.00910 * 110.99650 * 56.05217 * 7 6 5 28 28 H 1.00905 * 111.00198 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.78967 * 180.02562 * 8 5 4 30 30 H 1.08005 * 119.96641 * 180.28224 * 9 8 5 31 31 H 1.09004 * 109.47066 * 42.70672 * 12 11 10 32 32 H 1.08994 * 109.47170 * 282.70528 * 12 11 10 33 33 H 0.97004 * 119.99934 * 180.02562 * 16 15 13 34 34 H 1.09003 * 115.55467 * 52.15802 * 21 11 10 35 35 H 1.09000 * 117.49496 * 0.02562 * 22 21 11 36 36 H 1.08998 * 117.50042 * 145.01823 * 22 21 11 37 37 H 1.08999 * 117.49944 * 252.50879 * 23 22 21 38 38 H 1.08999 * 117.49602 * 107.48897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 0.6273 1.0324 5 6 4.6487 0.6247 1.0262 6 6 5.4046 1.3017 2.1404 7 7 5.6511 0.3378 3.2211 8 6 5.3430 0.0039 0.0003 9 6 4.6632 -0.6239 -1.0238 10 6 3.2745 -0.6269 -1.0379 11 7 2.5875 -1.2537 -2.0715 12 6 2.8519 -2.6986 -2.0792 13 6 1.8008 -3.3973 -2.9027 14 1 0.9659 -2.8385 -3.2993 15 6 1.9050 -4.7497 -3.1498 16 7 2.9213 -5.4301 -2.6665 17 14 0.5981 -5.6171 -4.1642 18 1 0.5371 -5.0088 -5.5175 19 1 0.9390 -7.0575 -4.2833 20 1 -0.7213 -5.4748 -3.4976 21 6 2.9228 -0.6503 -3.3682 22 6 2.0118 0.4651 -3.8851 23 6 1.9740 -0.9179 -4.5384 24 1 2.7346 1.1130 1.8343 25 1 6.3563 1.6731 1.7606 26 1 4.8164 2.1353 2.5243 27 1 6.1393 -0.4752 2.8761 28 1 6.1574 0.7678 3.9807 29 1 6.4230 0.0070 0.0046 30 1 5.2119 -1.1094 -1.8174 31 1 2.8249 -3.0783 -1.0578 32 1 3.8352 -2.8858 -2.5105 33 1 2.9947 -6.3815 -2.8407 34 1 3.9872 -0.5747 -3.5905 35 1 1.1640 0.7515 -3.2627 36 1 2.4769 1.2748 -4.4473 37 1 2.4142 -1.0180 -5.5305 38 1 1.1011 -1.5416 -4.3460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723164218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = 93.088432 kcal Electronic energy + Delta-G solvation = -20254.363913 eV Core-core repulsion = 17290.842470 eV Total energy + Delta-G solvation = -2963.521443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90223 -37.55122 -36.00860 -34.84926 -33.47577 -32.39700 -31.09442 -29.38164 -26.86842 -24.34488 -23.49885 -22.42081 -21.91259 -21.57595 -19.62849 -18.00843 -16.89091 -16.15936 -15.93108 -15.54510 -14.97126 -14.65312 -14.32827 -14.18429 -13.82019 -13.55852 -13.24416 -12.89478 -12.69545 -12.53319 -12.06797 -11.97555 -11.77798 -11.64862 -11.30846 -11.07560 -10.97361 -10.83990 -10.68274 -10.06945 -9.82588 -9.34851 -9.24349 -8.91168 -8.73890 -8.45739 -8.28389 -7.66360 -6.06084 -4.06547 1.06059 1.44983 3.27669 3.30181 3.32576 3.36683 3.40272 4.14155 4.29160 4.34495 4.46477 4.52297 4.60920 4.83350 4.99618 5.18036 5.26438 5.29419 5.46095 5.53279 5.59359 5.67858 5.70990 5.94380 6.02824 6.12647 6.23379 6.34339 6.52377 6.59357 6.64728 6.84653 6.90590 6.94869 7.17111 7.20058 7.25219 7.77550 7.95839 8.04220 8.10118 8.46374 8.98491 9.56632 11.04595 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.005441 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.905640 B = 5144.407950 C = 5491.744825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.278 3.722 3 C -0.021 4.021 4 C -0.047 4.047 5 C -0.110 4.110 6 C 0.107 3.893 7 N -0.847 5.847 8 C -0.077 4.077 9 C -0.152 4.152 10 C 0.176 3.824 11 N -0.491 5.491 12 C 0.205 3.795 13 C -0.504 4.504 14 H 0.069 0.931 15 C 0.058 3.942 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.028 3.972 22 C -0.184 4.184 23 C -0.146 4.146 24 H 0.130 0.870 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.344 0.656 28 H 0.340 0.660 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.028 0.972 32 H 0.007 0.993 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 13.320 5.321 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.038 4.038 3 C -0.026 4.026 4 C -0.068 4.068 5 C -0.110 4.110 6 C -0.023 4.023 7 N -0.377 5.377 8 C -0.097 4.097 9 C -0.172 4.172 10 C 0.078 3.922 11 N -0.213 5.213 12 C 0.083 3.917 13 C -0.542 4.542 14 H 0.087 0.913 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.080 4.080 22 C -0.222 4.222 23 C -0.183 4.183 24 H 0.148 0.852 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.722 13.131 5.453 15.326 hybrid contribution 1.747 -0.760 -0.923 2.117 sum 7.469 12.371 4.529 15.144 Atomic orbital electron populations 1.81107 1.12134 1.08711 1.08414 1.25242 0.92308 0.93271 0.92932 1.16059 0.84880 1.04082 0.97574 1.20840 0.93397 0.96752 0.95842 1.19471 0.93246 1.01819 0.96501 1.20625 0.97738 0.94163 0.89764 1.58709 1.57276 1.10391 1.11349 1.21033 0.99519 0.95813 0.93360 1.21739 0.94549 1.00915 0.99984 1.19010 0.90067 0.91384 0.91708 1.59438 1.55361 1.06886 0.99642 1.19804 0.96574 0.77618 0.97677 1.21144 1.08299 0.92864 1.31899 0.91335 1.24940 0.95836 0.97382 0.96217 1.69935 1.29991 1.08351 1.45529 0.86594 0.82052 0.78396 0.80640 1.20126 1.21342 1.20185 1.22070 0.94082 1.01714 0.90087 1.23042 1.02737 0.92209 1.04236 1.23070 1.02885 0.97181 0.95134 0.85212 0.94667 0.90227 0.84289 0.84691 0.86185 0.85254 0.95358 0.97534 0.92835 0.90304 0.89140 0.89751 0.89628 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.90 18.54 41.84 0.78 -8.12 16 2 C 0.28 5.29 14.81 -22.48 -0.33 4.96 16 3 C -0.02 -0.36 5.76 -106.61 -0.61 -0.97 16 4 C -0.05 -0.62 9.39 -39.18 -0.37 -0.99 16 5 C -0.11 -1.27 5.39 -104.66 -0.56 -1.83 16 6 C 0.11 0.93 6.90 -4.98 -0.03 0.90 16 7 N -0.85 -7.30 9.61 -11.41 -0.11 -7.41 16 8 C -0.08 -0.93 9.67 -39.54 -0.38 -1.31 16 9 C -0.15 -2.31 8.68 -39.42 -0.34 -2.65 16 10 C 0.18 3.16 4.61 -83.55 -0.38 2.78 16 11 N -0.49 -10.25 3.92 -164.67 -0.64 -10.90 16 12 C 0.21 5.13 4.30 -4.98 -0.02 5.11 16 13 C -0.50 -13.68 8.05 -34.44 -0.28 -13.96 16 14 H 0.07 1.86 5.47 -52.48 -0.29 1.57 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.03 0.52 4.57 -67.71 -0.31 0.21 16 22 C -0.18 -3.05 10.46 -26.73 -0.28 -3.33 16 23 C -0.15 -2.69 9.38 -26.73 -0.25 -2.94 16 24 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 25 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 26 H 0.08 0.63 8.08 -51.92 -0.42 0.21 16 27 H 0.34 2.89 8.99 -39.29 -0.35 2.54 16 28 H 0.34 2.14 9.08 -39.29 -0.36 1.78 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.97 7.45 -52.48 -0.39 1.58 16 31 H 0.03 0.78 7.95 -51.93 -0.41 0.36 16 32 H 0.01 0.18 7.84 -51.93 -0.41 -0.23 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.08 1.37 7.37 -51.93 -0.38 0.99 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.11 2.42 5.65 -51.93 -0.29 2.13 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -30.71 328.45 -8.54 -39.26 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.97 Total: 3.56 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -4.26 Total: -12.54 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.76 Total: -51.77 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.71 -8.54 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723164218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.346 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds