Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39733 * 120.21000 * 238.75642 * 3 2 1 5 5 C 1.37796 * 119.91968 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.82497 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47053 * 89.99522 * 6 5 4 8 8 C 1.38562 * 120.34746 * 0.02562 * 5 4 3 9 9 C 1.38016 * 120.42277 * 359.71663 * 8 5 4 10 10 C 1.38882 * 120.06905 * 0.56012 * 9 8 5 11 11 N 1.39034 * 120.17362 * 179.71814 * 10 9 8 12 12 C 1.46896 * 110.99821 * 63.67903 * 11 10 9 13 13 C 1.50705 * 109.47033 * 162.70327 * 12 11 10 14 14 H 1.08003 * 119.99942 * 354.49234 * 13 12 11 15 15 C 1.37875 * 119.99880 * 174.49638 * 13 12 11 16 16 N 1.31508 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99728 * 179.72428 * 15 13 12 18 18 H 1.48499 * 109.47200 * 59.99986 * 17 15 13 19 19 H 1.48495 * 109.47376 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47193 * 299.99922 * 17 15 13 21 21 C 1.46894 * 110.99827 * 299.72756 * 11 10 9 22 22 C 1.53010 * 117.50046 * 266.45347 * 21 11 10 23 23 C 1.53000 * 59.99921 * 252.50939 * 22 21 11 24 24 H 1.07996 * 120.03820 * 0.02562 * 4 3 2 25 25 H 1.08993 * 109.47237 * 209.99956 * 6 5 4 26 26 H 1.09007 * 109.46741 * 329.99998 * 6 5 4 27 27 H 1.00910 * 110.99650 * 56.05217 * 7 6 5 28 28 H 1.00905 * 111.00198 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.78967 * 180.02562 * 8 5 4 30 30 H 1.08005 * 119.96641 * 180.28224 * 9 8 5 31 31 H 1.09004 * 109.47066 * 42.70672 * 12 11 10 32 32 H 1.08994 * 109.47170 * 282.70528 * 12 11 10 33 33 H 0.97004 * 119.99934 * 180.02562 * 16 15 13 34 34 H 1.09003 * 115.55467 * 52.15802 * 21 11 10 35 35 H 1.09000 * 117.49496 * 0.02562 * 22 21 11 36 36 H 1.08998 * 117.50042 * 145.01823 * 22 21 11 37 37 H 1.08999 * 117.49944 * 252.50879 * 23 22 21 38 38 H 1.08999 * 117.49602 * 107.48897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 0.6273 1.0324 5 6 4.6487 0.6247 1.0262 6 6 5.4046 1.3017 2.1404 7 7 5.6511 0.3378 3.2211 8 6 5.3430 0.0039 0.0003 9 6 4.6632 -0.6239 -1.0238 10 6 3.2745 -0.6269 -1.0379 11 7 2.5875 -1.2537 -2.0715 12 6 2.8519 -2.6986 -2.0792 13 6 1.8008 -3.3973 -2.9027 14 1 0.9659 -2.8385 -3.2993 15 6 1.9050 -4.7497 -3.1498 16 7 2.9213 -5.4301 -2.6665 17 14 0.5981 -5.6171 -4.1642 18 1 0.5371 -5.0088 -5.5175 19 1 0.9390 -7.0575 -4.2833 20 1 -0.7213 -5.4748 -3.4976 21 6 2.9228 -0.6503 -3.3682 22 6 2.0118 0.4651 -3.8851 23 6 1.9740 -0.9179 -4.5384 24 1 2.7346 1.1130 1.8343 25 1 6.3563 1.6731 1.7606 26 1 4.8164 2.1353 2.5243 27 1 6.1393 -0.4752 2.8761 28 1 6.1574 0.7678 3.9807 29 1 6.4230 0.0070 0.0046 30 1 5.2119 -1.1094 -1.8174 31 1 2.8249 -3.0783 -1.0578 32 1 3.8352 -2.8858 -2.5105 33 1 2.9947 -6.3815 -2.8407 34 1 3.9872 -0.5747 -3.5905 35 1 1.1640 0.7515 -3.2627 36 1 2.4769 1.2748 -4.4473 37 1 2.4142 -1.0180 -5.5305 38 1 1.1011 -1.5416 -4.3460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723164218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = 73.199972 kcal Electronic energy + Delta-G solvation = -20255.226341 eV Core-core repulsion = 17290.842470 eV Total energy + Delta-G solvation = -2964.383871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16637 -38.88612 -37.45013 -35.98388 -35.12857 -34.01650 -32.26825 -30.72300 -28.61162 -25.41265 -24.71735 -24.26047 -23.18402 -22.92628 -21.05568 -19.30598 -18.60531 -17.44498 -17.09433 -16.77413 -16.59923 -15.97778 -15.63803 -15.39848 -15.00955 -14.87186 -14.58077 -14.38565 -14.13658 -13.90921 -13.82415 -13.44629 -13.16937 -13.02710 -12.77392 -12.64877 -12.50146 -12.44818 -12.07713 -11.86421 -11.38406 -11.19709 -10.83245 -10.57463 -9.90385 -9.63494 -9.38784 -9.26973 -8.19818 -6.26764 -0.14454 0.32170 1.38204 1.40739 1.47900 1.79130 2.02086 2.38189 2.85340 2.89670 3.05426 3.09819 3.13731 3.84667 3.93764 4.07234 4.12924 4.16901 4.27040 4.29412 4.39793 4.52822 4.66683 4.78127 4.82816 4.90174 4.97754 5.05128 5.14645 5.20637 5.26353 5.39517 5.49461 5.52776 5.72890 5.83942 6.07657 6.23621 6.32853 6.58360 6.71770 6.76137 6.85585 7.40599 8.90623 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.005441 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.905640 B = 5144.407950 C = 5491.744825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.290 3.710 3 C -0.043 4.043 4 C -0.039 4.039 5 C -0.095 4.095 6 C 0.110 3.890 7 N -0.860 5.860 8 C -0.059 4.059 9 C -0.159 4.159 10 C 0.143 3.857 11 N -0.502 5.502 12 C 0.227 3.773 13 C -0.513 4.513 14 H 0.064 0.936 15 C 0.009 3.991 16 N -0.931 5.931 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.279 1.279 21 C 0.011 3.989 22 C -0.153 4.153 23 C -0.160 4.160 24 H 0.150 0.850 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.345 0.655 28 H 0.355 0.645 29 H 0.157 0.843 30 H 0.124 0.876 31 H -0.006 1.006 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 15.123 5.748 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.025 4.025 3 C -0.047 4.047 4 C -0.060 4.060 5 C -0.096 4.096 6 C -0.020 4.020 7 N -0.392 5.392 8 C -0.078 4.078 9 C -0.180 4.180 10 C 0.046 3.954 11 N -0.223 5.223 12 C 0.104 3.896 13 C -0.551 4.551 14 H 0.082 0.918 15 C -0.189 4.189 16 N -0.571 5.571 17 Si 0.781 3.219 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.096 4.096 22 C -0.190 4.190 23 C -0.197 4.197 24 H 0.167 0.833 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.158 0.842 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.142 0.858 31 H 0.012 0.988 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.407 14.967 5.888 17.707 hybrid contribution 1.328 -1.235 -0.957 2.050 sum 8.735 13.732 4.931 17.005 Atomic orbital electron populations 1.81089 1.13366 1.10511 1.09914 1.25765 0.92937 0.92024 0.91737 1.16231 0.83672 1.06050 0.98765 1.21114 0.94316 0.95633 0.94949 1.19875 0.92623 1.00155 0.96897 1.20677 0.98591 0.93984 0.88785 1.58676 1.58021 1.10701 1.11833 1.21390 1.01267 0.93490 0.91700 1.21719 0.93352 1.01741 1.01148 1.19097 0.91323 0.93275 0.91746 1.59189 1.56767 1.04779 1.01611 1.19306 0.94872 0.80666 0.94788 1.21452 1.08576 0.93326 1.31780 0.91842 1.25719 0.97741 0.98144 0.97331 1.70046 1.31657 1.08595 1.46839 0.85641 0.79171 0.77493 0.79587 1.18825 1.20685 1.20498 1.22244 0.94998 1.03074 0.89250 1.23021 1.01295 0.92021 1.02712 1.23016 1.01998 0.98471 0.96213 0.83254 0.92205 0.89052 0.84175 0.83028 0.82528 0.85831 0.98825 0.99506 0.92761 0.89034 0.90670 0.86068 0.87689 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.28 18.54 19.00 0.35 -19.93 16 2 C 0.29 11.30 14.81 88.33 1.31 12.61 16 3 C -0.04 -1.43 5.76 -21.15 -0.12 -1.55 16 4 C -0.04 -0.95 9.39 22.53 0.21 -0.74 16 5 C -0.09 -1.88 5.39 -19.89 -0.11 -1.98 16 6 C 0.11 1.41 6.90 85.56 0.59 2.00 16 7 N -0.86 -11.68 9.61 -190.01 -1.83 -13.50 16 8 C -0.06 -1.24 9.67 22.29 0.22 -1.02 16 9 C -0.16 -4.71 8.68 22.37 0.19 -4.52 16 10 C 0.14 5.18 4.61 38.67 0.18 5.36 16 11 N -0.50 -21.62 3.92 -674.89 -2.64 -24.27 16 12 C 0.23 11.90 4.30 85.56 0.37 12.27 16 13 C -0.51 -28.92 8.05 25.60 0.21 -28.72 16 14 H 0.06 3.59 5.47 -2.91 -0.02 3.57 16 15 C 0.01 0.50 5.46 84.66 0.46 0.97 16 16 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 17 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 C 0.01 0.43 4.57 44.92 0.21 0.63 16 22 C -0.15 -4.91 10.46 30.60 0.32 -4.59 16 23 C -0.16 -5.94 9.38 30.60 0.29 -5.66 16 24 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 25 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.09 1.03 8.08 -2.38 -0.02 1.01 16 27 H 0.35 4.62 8.99 -89.69 -0.81 3.81 16 28 H 0.36 3.17 9.08 -89.69 -0.81 2.36 16 29 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.12 3.75 7.45 -2.91 -0.02 3.73 16 31 H -0.01 -0.37 7.95 -2.38 -0.02 -0.39 16 32 H -0.01 -0.71 7.84 -2.39 -0.02 -0.73 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.09 3.15 7.37 -2.39 -0.02 3.14 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.08 3.60 5.65 -2.39 -0.01 3.58 16 Total: -1.00 -69.57 328.45 1.99 -67.58 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.52 Total: 13.14 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.32 Total: -14.94 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.83 Total: -112.84 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.57 1.99 -67.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723164218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.779 kcal (2) G-P(sol) polarization free energy of solvation -69.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds