Wall clock time and date at job start Mon Mar 30 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47128 * 176.58136 * 3 2 1 5 5 C 1.36843 * 120.00338 * 84.76919 * 4 3 2 6 6 H 1.08003 * 120.00234 * 352.32783 * 5 4 3 7 7 C 1.38799 * 120.00001 * 172.05019 * 5 4 3 8 8 N 1.31585 * 120.00028 * 347.11500 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 167.11363 * 7 5 4 10 10 H 1.48504 * 109.47484 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47067 * 120.00220 * 9 7 5 12 12 H 1.48500 * 109.47264 * 239.99955 * 9 7 5 13 13 C 1.39304 * 119.99488 * 264.77359 * 4 3 2 14 14 C 1.39097 * 120.08754 * 269.99617 * 13 4 3 15 15 C 1.38033 * 119.90877 * 179.97438 * 14 13 4 16 16 C 1.38352 * 120.08674 * 0.02562 * 15 14 13 17 17 C 1.38304 * 120.18386 * 359.97438 * 16 15 14 18 18 C 1.38074 * 120.08751 * 359.73830 * 17 16 15 19 19 C 1.50702 * 120.04813 * 180.27944 * 18 17 16 20 20 N 1.46902 * 109.47302 * 260.25792 * 19 18 17 21 21 C 1.46892 * 110.99899 * 179.97438 * 20 19 18 22 22 C 1.53007 * 117.49712 * 223.74071 * 21 20 19 23 23 C 1.53007 * 117.50036 * 155.08485 * 21 20 19 24 24 H 1.08996 * 109.47178 * 56.57626 * 3 2 1 25 25 H 1.09004 * 109.47263 * 296.57731 * 3 2 1 26 26 H 0.96995 * 120.00187 * 180.02562 * 8 7 5 27 27 H 1.07999 * 120.04995 * 0.02562 * 14 13 4 28 28 H 1.07995 * 119.95428 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.90776 * 179.97438 * 16 15 14 30 30 H 1.07994 * 119.95712 * 180.02562 * 17 16 15 31 31 H 1.09006 * 109.46564 * 20.25551 * 19 18 17 32 32 H 1.08993 * 109.47462 * 140.25142 * 19 18 17 33 33 H 1.00900 * 111.00039 * 56.03816 * 20 19 18 34 34 H 1.09001 * 115.55442 * 9.41351 * 21 20 19 35 35 H 1.08998 * 117.49775 * 0.02562 * 22 21 20 36 36 H 1.09001 * 117.49337 * 145.01784 * 22 21 20 37 37 H 1.08997 * 117.49956 * 214.97784 * 23 21 20 38 38 H 1.09003 * 117.49742 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.3797 -0.0824 5 6 3.2216 2.1300 1.0550 6 1 2.8469 1.7528 1.9951 7 6 3.8359 3.3735 1.0016 8 7 4.5177 3.7251 -0.0675 9 14 3.6948 4.5478 2.4475 10 1 2.8803 3.9190 3.5183 11 1 5.0505 4.8535 2.9710 12 1 3.0411 5.8046 2.0024 13 6 3.4312 1.9270 -1.3187 14 6 4.7293 1.8093 -1.8042 15 6 5.0576 2.3526 -3.0299 16 6 4.0976 3.0140 -3.7750 17 6 2.8057 3.1332 -3.2957 18 6 2.4677 2.5874 -2.0733 19 6 1.0582 2.7123 -1.5548 20 7 0.9910 3.8077 -0.5783 21 6 -0.3715 3.9596 -0.0507 22 6 -0.9258 5.3802 0.0756 23 6 -0.5271 4.5994 1.3304 24 1 2.9715 -0.5652 -0.8577 25 1 2.9715 -0.4590 0.9191 26 1 4.9474 4.5939 -0.1047 27 1 5.4792 1.2929 -1.2234 28 1 6.0651 2.2613 -3.4078 29 1 4.3577 3.4383 -4.7334 30 1 2.0591 3.6498 -3.8805 31 1 0.3834 2.9232 -2.3845 32 1 0.7635 1.7791 -1.0750 33 1 1.3210 4.6720 -0.9810 34 1 -1.0712 3.1686 -0.3206 35 1 -0.2796 6.2018 -0.2331 36 1 -1.9901 5.5234 -0.1109 37 1 -1.3292 4.2294 1.9690 38 1 0.3816 4.9071 1.8478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723173415.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:13 Heat of formation + Delta-G solvation = 112.835053 kcal Electronic energy + Delta-G solvation = -21486.647199 eV Core-core repulsion = 18523.982034 eV Total energy + Delta-G solvation = -2962.665165 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34659 -38.53517 -37.67725 -36.31736 -34.59885 -33.18342 -30.97941 -30.49899 -28.29891 -25.98935 -24.84649 -23.29479 -22.50926 -22.08351 -21.45704 -19.18663 -18.40537 -17.26481 -16.96656 -16.56887 -16.22391 -15.94664 -15.59759 -15.32527 -14.80520 -14.57742 -14.30738 -13.92319 -13.79002 -13.59447 -13.52859 -12.98761 -12.87159 -12.78414 -12.52305 -12.39598 -12.24883 -12.08280 -11.81238 -11.74295 -11.58872 -11.45376 -11.21624 -10.68580 -9.22984 -8.99885 -8.93791 -8.79610 -7.40382 -5.07748 1.02658 1.16026 1.50327 1.58239 1.59841 1.95963 2.08337 2.69467 2.91933 3.19290 3.40636 3.57977 3.75013 3.79110 3.97610 4.05915 4.15340 4.37936 4.42056 4.59055 4.67437 4.68181 4.68555 4.74558 4.87852 4.93066 4.98602 5.08067 5.21335 5.25184 5.53070 5.72837 5.79830 6.01574 6.11535 6.32094 6.33769 6.51908 6.59021 6.65959 6.86114 7.44887 8.00660 8.30311 9.37764 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.010007 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.559699 B = 2797.283535 C = 3146.277838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.217 3.783 3 C 0.226 3.774 4 N -0.554 5.554 5 C -0.241 4.241 6 H 0.069 0.931 7 C 0.010 3.990 8 N -0.891 5.891 9 Si 0.933 3.067 10 H -0.285 1.285 11 H -0.307 1.307 12 H -0.304 1.304 13 C 0.280 3.720 14 C -0.078 4.078 15 C -0.126 4.126 16 C -0.152 4.152 17 C -0.129 4.129 18 C -0.129 4.129 19 C 0.118 3.882 20 N -0.627 5.627 21 C 0.024 3.976 22 C -0.189 4.189 23 C -0.181 4.181 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.240 0.760 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.329 0.671 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 -2.587 -4.858 5.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.102 4.102 3 C 0.096 3.904 4 N -0.270 5.270 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.187 4.187 8 N -0.536 5.536 9 Si 0.767 3.233 10 H -0.210 1.210 11 H -0.236 1.236 12 H -0.232 1.232 13 C 0.187 3.813 14 C -0.098 4.098 15 C -0.145 4.145 16 C -0.170 4.170 17 C -0.148 4.148 18 C -0.132 4.132 19 C -0.010 4.010 20 N -0.255 5.255 21 C -0.087 4.087 22 C -0.228 4.228 23 C -0.219 4.219 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.595 -2.840 -4.297 6.281 hybrid contribution -0.081 1.762 0.416 1.812 sum -3.675 -1.078 -3.881 5.453 Atomic orbital electron populations 1.80991 1.15185 1.10643 1.11668 1.31889 0.97459 0.90303 0.90531 1.19029 0.78711 0.86733 1.05923 1.41399 1.73134 1.09985 1.02491 1.18974 1.32464 0.98483 0.86981 0.91310 1.24713 0.98438 0.98307 0.97280 1.70057 1.35446 1.20101 1.27984 0.85779 0.75580 0.80761 0.81212 1.21019 1.23554 1.23200 1.16780 0.90626 0.90162 0.83780 1.21134 0.95504 0.99006 0.94167 1.20921 0.98861 0.99576 0.95154 1.20903 0.93241 1.02297 1.00549 1.20774 0.96929 1.01215 0.95931 1.20167 0.95693 1.01700 0.95686 1.20766 0.92911 0.95619 0.91754 1.60037 1.18814 1.07807 1.38834 1.22343 0.90910 0.95374 1.00074 1.23432 1.02186 0.94798 1.02401 1.23011 1.02154 1.05068 0.91670 0.85943 0.85892 0.94916 0.88345 0.86185 0.85832 0.87421 0.97038 0.90577 0.85261 0.88731 0.89246 0.86935 0.88019 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -19.76 17.71 20.00 0.35 -19.41 16 2 C 0.22 7.73 13.20 89.44 1.18 8.91 16 3 C 0.23 7.14 6.15 84.57 0.52 7.66 16 4 N -0.55 -22.68 1.89 -521.69 -0.99 -23.67 16 5 C -0.24 -11.36 9.65 84.05 0.81 -10.55 16 6 H 0.07 3.31 7.86 -2.91 -0.02 3.28 16 7 C 0.01 0.51 5.33 84.86 0.45 0.96 16 8 N -0.89 -45.23 9.59 21.65 0.21 -45.02 16 9 Si 0.93 44.03 29.57 68.60 2.03 46.06 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 12 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 13 C 0.28 11.58 2.95 38.36 0.11 11.70 16 14 C -0.08 -3.10 8.10 22.43 0.18 -2.91 16 15 C -0.13 -4.49 10.04 22.25 0.22 -4.27 16 16 C -0.15 -5.21 10.04 22.31 0.22 -4.99 16 17 C -0.13 -4.75 9.66 22.25 0.21 -4.54 16 18 C -0.13 -5.21 5.39 -19.71 -0.11 -5.32 16 19 C 0.12 4.67 5.30 85.56 0.45 5.12 16 20 N -0.63 -25.37 6.69 -495.56 -3.31 -28.68 16 21 C 0.02 0.87 6.31 44.92 0.28 1.15 16 22 C -0.19 -5.67 10.23 30.62 0.31 -5.36 16 23 C -0.18 -6.27 10.46 30.62 0.32 -5.95 16 24 H 0.12 3.11 8.01 -2.39 -0.02 3.10 16 25 H 0.12 3.32 8.08 -2.39 -0.02 3.30 16 26 H 0.24 12.58 8.31 -92.71 -0.77 11.81 16 27 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 29 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.11 3.56 8.04 -2.91 -0.02 3.54 16 31 H 0.01 0.43 8.01 -2.38 -0.02 0.42 16 32 H 0.08 3.11 3.82 -2.39 -0.01 3.10 16 33 H 0.33 13.68 8.51 -89.69 -0.76 12.92 16 34 H 0.09 3.45 7.90 -2.39 -0.02 3.43 16 35 H 0.09 2.70 8.09 -2.39 -0.02 2.68 16 36 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -56.49 324.81 3.78 -52.71 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.31 Total: 26.40 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.19 Total: -8.39 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -3.74 Total: -116.78 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -56.49 3.78 -52.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723173415.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.544 kcal (2) G-P(sol) polarization free energy of solvation -56.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds