Wall clock time and date at job start Mon Mar 30 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48503 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46716 * 300.00009 * 3 2 1 6 6 H 1.48496 * 109.47278 * 59.99832 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.66635 * 59.30048 * 15 14 13 17 17 C 1.55129 * 110.74675 * 182.50656 * 15 14 13 18 18 C 1.54848 * 101.93115 * 157.55164 * 17 15 14 19 19 H 1.08994 * 113.06180 * 214.85628 * 18 17 15 20 20 C 1.54412 * 108.40246 * 87.88647 * 18 17 15 21 21 O 1.44370 * 104.96132 * 226.28088 * 20 18 17 22 22 C 1.44391 * 105.25580 * 40.66886 * 21 20 18 23 23 C 1.54370 * 104.88079 * 319.13814 * 22 21 20 24 24 H 1.08999 * 111.94711 * 263.29346 * 23 22 21 25 25 O 1.43885 * 108.86031 * 137.99848 * 23 22 21 26 26 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 28 28 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 29 29 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 30 30 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 31 31 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 32 32 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 33 33 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 34 34 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 35 35 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 36 36 H 1.09004 * 110.93834 * 275.71617 * 17 15 14 37 37 H 1.09007 * 110.93752 * 39.35657 * 17 15 14 38 38 H 1.09005 * 110.34185 * 345.14890 * 20 18 17 39 39 H 1.08995 * 110.34145 * 107.40861 * 20 18 17 40 40 H 1.09006 * 110.35629 * 200.28971 * 22 21 20 41 41 H 1.08999 * 110.45412 * 78.04039 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 4.4593 -6.9124 1.2941 15 6 5.2270 -6.8096 2.6136 16 1 4.5558 -6.9486 3.4610 17 6 6.3866 -7.8392 2.6563 18 6 7.3359 -7.2088 3.7047 19 1 8.3896 -7.3775 3.4826 20 6 6.9113 -7.7010 5.1053 21 8 6.8982 -6.5154 5.9289 22 6 6.3222 -5.4831 5.0998 23 6 6.9416 -5.7047 3.7033 24 1 7.8013 -5.0570 3.5315 25 8 5.9152 -5.5418 2.7081 26 1 -0.4851 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9831 -0.8877 30 1 0.9444 -4.9818 0.8922 31 1 2.1818 -6.9376 -0.0860 32 1 3.3214 -5.7962 -0.8388 33 1 2.7959 -5.9682 2.0564 34 1 4.0062 -7.9004 1.2139 35 1 5.1454 -6.7585 0.4612 36 1 6.0300 -8.8138 2.9898 37 1 6.8747 -7.9168 1.6848 38 1 5.9168 -8.1455 5.0653 39 1 7.6339 -8.4211 5.4891 40 1 6.5893 -4.4975 5.4811 41 1 5.2384 -5.5908 5.0554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724555481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:58 Heat of formation + Delta-G solvation = -132.609683 kcal Electronic energy + Delta-G solvation = -21023.284919 eV Core-core repulsion = 17710.374800 eV Total energy + Delta-G solvation = -3312.910119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00643 -37.62714 -36.89502 -35.27243 -32.78443 -32.58918 -30.92047 -28.88899 -27.86350 -26.59847 -24.62540 -23.08979 -22.23029 -21.58060 -20.99702 -20.75822 -17.13148 -16.72216 -16.31665 -15.96804 -15.77743 -15.72573 -15.34781 -15.11193 -14.56203 -14.31393 -13.78826 -13.61942 -13.42628 -13.35260 -12.71069 -12.42418 -12.12469 -11.86173 -11.75291 -11.50639 -11.27520 -11.21704 -11.13886 -10.94954 -10.72251 -10.67171 -10.37824 -10.31714 -9.90956 -9.60558 -8.99084 -8.73339 -8.15076 -8.05427 -6.03169 -4.03445 3.35166 3.41252 3.41831 3.49328 3.73879 4.15047 4.17931 4.41751 4.43114 4.45204 4.68603 4.76433 4.86107 4.94867 4.97445 5.03196 5.20562 5.24126 5.33519 5.36879 5.44516 5.50707 5.56676 5.62682 5.62962 5.70663 5.81521 5.86993 6.04299 6.13216 6.33614 6.37190 6.81896 7.16072 7.20964 7.51742 7.57044 7.89961 8.25550 8.70635 9.12228 9.61220 11.08706 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.003658 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.968410 B = 7652.221381 C = 8656.232650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.378 6.378 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.668 5.668 14 C 0.068 3.932 15 C 0.076 3.924 16 H 0.067 0.933 17 C -0.144 4.144 18 C -0.155 4.155 19 H 0.105 0.895 20 C 0.048 3.952 21 O -0.373 6.373 22 C 0.021 3.979 23 C 0.044 3.956 24 H 0.117 0.883 25 O -0.332 6.332 26 H 0.262 0.738 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.338 0.662 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 -19.602 7.268 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.063 4.063 13 N -0.299 5.299 14 C -0.062 4.062 15 C 0.018 3.982 16 H 0.085 0.915 17 C -0.182 4.182 18 C -0.174 4.174 19 H 0.123 0.877 20 C -0.028 4.028 21 O -0.292 6.292 22 C -0.056 4.056 23 C -0.015 4.015 24 H 0.135 0.865 25 O -0.250 6.250 26 H 0.072 0.928 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.601 -18.731 7.130 23.675 hybrid contribution -0.610 -0.152 0.087 0.635 sum 11.990 -18.884 7.217 23.504 Atomic orbital electron populations 1.69974 1.06110 1.26891 1.51168 1.24949 0.94953 0.99410 0.95321 0.86296 0.80155 0.82650 0.77504 1.19408 1.20950 1.20900 1.21128 0.94200 0.89330 1.49966 0.91398 1.20184 0.88870 0.84012 0.95057 1.87980 1.34534 1.12281 1.94991 1.22216 0.93803 0.86474 0.98802 1.21989 0.95733 0.95561 0.93020 1.60200 1.15978 1.49508 1.04262 1.21956 0.94594 0.92972 0.96638 1.23263 0.93543 0.83460 0.97900 0.91484 1.23266 0.96049 0.99020 0.99889 1.23936 1.01339 0.95938 0.96220 0.87674 1.23529 1.01124 0.89081 0.89103 1.89137 1.83291 1.19759 1.37036 1.24054 0.98560 0.92847 0.90147 1.24246 0.92212 0.95801 0.89204 0.86518 1.89252 1.46247 1.31652 1.57824 0.92847 0.98042 0.97932 0.94226 0.94852 0.95012 0.90344 0.84403 0.94378 0.90102 0.89928 0.89810 0.91980 0.88941 0.88156 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.28 55.43 0.74 -26.94 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.53 29.54 -169.99 -5.02 17.51 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -15.56 9.43 -34.44 -0.32 -15.88 16 8 H 0.07 2.09 7.81 -52.49 -0.41 1.68 16 9 C 0.19 5.51 5.69 36.01 0.20 5.71 16 10 O -0.38 -9.59 10.27 -35.23 -0.36 -9.95 16 11 C 0.07 1.24 6.22 37.16 0.23 1.47 16 12 C 0.07 1.00 6.07 -3.82 -0.02 0.97 16 13 N -0.67 -10.09 6.41 -113.78 -0.73 -10.82 16 14 C 0.07 0.79 5.47 -3.82 -0.02 0.76 16 15 C 0.08 0.83 3.07 -25.61 -0.08 0.75 16 16 H 0.07 0.70 7.55 -51.93 -0.39 0.30 16 17 C -0.14 -1.13 5.84 -24.63 -0.14 -1.27 16 18 C -0.16 -1.28 4.31 -87.58 -0.38 -1.65 16 19 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 20 C 0.05 0.40 6.98 37.90 0.26 0.66 16 21 O -0.37 -4.20 11.65 -35.23 -0.41 -4.61 16 22 C 0.02 0.23 7.13 37.88 0.27 0.50 16 23 C 0.04 0.48 4.72 -24.68 -0.12 0.36 16 24 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 25 O -0.33 -4.65 10.82 -35.23 -0.38 -5.03 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.34 4.77 8.73 -39.29 -0.34 4.43 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.49 7.71 -51.93 -0.40 0.09 16 37 H 0.08 0.64 8.08 -51.92 -0.42 0.22 16 38 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.81 7.28 -51.93 -0.38 0.43 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -34.53 334.37 -8.28 -42.81 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.94 Total: -1.91 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.21 Total: -6.09 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.01 Total: -37.76 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.15 Total: -19.59 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.53 -8.28 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724555481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.802 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds