Wall clock time and date at job start Mon Mar 30 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48503 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46716 * 300.00009 * 3 2 1 6 6 H 1.48496 * 109.47278 * 59.99832 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.66635 * 59.30048 * 15 14 13 17 17 C 1.55129 * 110.74675 * 182.50656 * 15 14 13 18 18 C 1.54848 * 101.93115 * 157.55164 * 17 15 14 19 19 H 1.08994 * 113.06180 * 214.85628 * 18 17 15 20 20 C 1.54412 * 108.40246 * 87.88647 * 18 17 15 21 21 O 1.44370 * 104.96132 * 226.28088 * 20 18 17 22 22 C 1.44391 * 105.25580 * 40.66886 * 21 20 18 23 23 C 1.54370 * 104.88079 * 319.13814 * 22 21 20 24 24 H 1.08999 * 111.94711 * 263.29346 * 23 22 21 25 25 O 1.43885 * 108.86031 * 137.99848 * 23 22 21 26 26 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 28 28 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 29 29 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 30 30 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 31 31 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 32 32 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 33 33 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 34 34 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 35 35 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 36 36 H 1.09004 * 110.93834 * 275.71617 * 17 15 14 37 37 H 1.09007 * 110.93752 * 39.35657 * 17 15 14 38 38 H 1.09005 * 110.34185 * 345.14890 * 20 18 17 39 39 H 1.08995 * 110.34145 * 107.40861 * 20 18 17 40 40 H 1.09006 * 110.35629 * 200.28971 * 22 21 20 41 41 H 1.08999 * 110.45412 * 78.04039 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 4.4593 -6.9124 1.2941 15 6 5.2270 -6.8096 2.6136 16 1 4.5558 -6.9486 3.4610 17 6 6.3866 -7.8392 2.6563 18 6 7.3359 -7.2088 3.7047 19 1 8.3896 -7.3775 3.4826 20 6 6.9113 -7.7010 5.1053 21 8 6.8982 -6.5154 5.9289 22 6 6.3222 -5.4831 5.0998 23 6 6.9416 -5.7047 3.7033 24 1 7.8013 -5.0570 3.5315 25 8 5.9152 -5.5418 2.7081 26 1 -0.4851 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9831 -0.8877 30 1 0.9444 -4.9818 0.8922 31 1 2.1818 -6.9376 -0.0860 32 1 3.3214 -5.7962 -0.8388 33 1 2.7959 -5.9682 2.0564 34 1 4.0062 -7.9004 1.2139 35 1 5.1454 -6.7585 0.4612 36 1 6.0300 -8.8138 2.9898 37 1 6.8747 -7.9168 1.6848 38 1 5.9168 -8.1455 5.0653 39 1 7.6339 -8.4211 5.4891 40 1 6.5893 -4.4975 5.4811 41 1 5.2384 -5.5908 5.0554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724555481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:57 Heat of formation + Delta-G solvation = -159.714674 kcal Electronic energy + Delta-G solvation = -21024.460280 eV Core-core repulsion = 17710.374800 eV Total energy + Delta-G solvation = -3314.085479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.78541 -38.89290 -38.21431 -36.59682 -34.87363 -33.50690 -32.00925 -30.09305 -29.19137 -28.23607 -25.55051 -24.46696 -23.91877 -22.87321 -21.87956 -21.49935 -18.64655 -17.90860 -17.70684 -17.31274 -16.88880 -16.70277 -16.51350 -16.45261 -16.05796 -15.60005 -15.12466 -15.02860 -14.64139 -14.24814 -14.08522 -13.56854 -13.40618 -13.15796 -13.00419 -12.77130 -12.68469 -12.57900 -12.30496 -12.19998 -11.96418 -11.94294 -11.82425 -11.51191 -11.23652 -11.11535 -10.86009 -10.46070 -10.18210 -9.20558 -8.31787 -6.43409 1.39302 1.41113 1.56387 2.35925 2.65131 2.97199 3.01656 3.21027 3.27271 3.46476 3.69401 3.74823 3.93001 4.04232 4.11406 4.13612 4.20272 4.26131 4.32675 4.46698 4.56869 4.62346 4.65914 4.69025 4.77308 4.81466 4.83280 4.88072 4.90978 5.00166 5.06650 5.14036 5.19762 5.56475 5.60975 5.97805 5.99427 6.14969 6.48593 6.59085 6.88189 7.28989 8.80910 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.003658 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.968410 B = 7652.221381 C = 8656.232650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.209 3.791 10 O -0.398 6.398 11 C 0.053 3.947 12 C 0.077 3.923 13 N -0.699 5.699 14 C 0.071 3.929 15 C 0.070 3.930 16 H 0.068 0.932 17 C -0.133 4.133 18 C -0.146 4.146 19 H 0.123 0.877 20 C 0.044 3.956 21 O -0.391 6.391 22 C 0.022 3.978 23 C 0.035 3.965 24 H 0.118 0.882 25 O -0.372 6.372 26 H 0.271 0.729 27 H -0.015 1.015 28 H -0.017 1.017 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.340 0.660 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 -20.739 7.366 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.134 3.866 10 O -0.318 6.318 11 C -0.024 4.024 12 C -0.052 4.052 13 N -0.332 5.332 14 C -0.058 4.058 15 C 0.012 3.988 16 H 0.086 0.914 17 C -0.171 4.171 18 C -0.165 4.165 19 H 0.141 0.859 20 C -0.032 4.032 21 O -0.311 6.311 22 C -0.055 4.055 23 C -0.024 4.024 24 H 0.136 0.864 25 O -0.291 6.291 26 H 0.080 0.920 27 H 0.003 0.997 28 H 0.000 1.000 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.117 0.883 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.710 -19.907 7.228 25.229 hybrid contribution -1.005 0.118 0.073 1.014 sum 12.705 -19.789 7.300 24.623 Atomic orbital electron populations 1.70068 1.07693 1.28552 1.50748 1.25953 0.95984 1.03334 0.93919 0.85144 0.78573 0.77327 0.78404 1.19116 1.19363 1.19514 1.21417 0.93952 0.91061 1.51946 0.92483 1.19792 0.88650 0.85033 0.93173 1.87932 1.34761 1.14029 1.95059 1.22625 0.95650 0.84655 0.99480 1.21877 0.94628 0.95672 0.92992 1.60142 1.16831 1.51987 1.04194 1.22010 0.93535 0.93468 0.96780 1.23421 0.94434 0.83445 0.97458 0.91443 1.23240 0.94566 0.99132 1.00157 1.23942 1.02403 0.93733 0.96400 0.85930 1.23760 1.02292 0.88402 0.88767 1.89114 1.83264 1.20755 1.37941 1.23979 0.97908 0.93056 0.90577 1.24382 0.91707 0.97992 0.88284 0.86391 1.89206 1.47359 1.33805 1.58725 0.92034 0.99729 0.99956 0.93298 0.94307 0.90898 0.91216 0.84132 0.91217 0.91044 0.87310 0.89309 0.91278 0.86757 0.88327 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.28 21.45 0.28 -57.27 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.98 46.17 29.54 68.60 2.03 48.20 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -34.29 9.43 25.60 0.24 -34.05 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.34 5.69 71.24 0.41 12.75 16 10 O -0.40 -20.76 10.27 -148.98 -1.53 -22.29 16 11 C 0.05 2.03 6.22 71.98 0.45 2.48 16 12 C 0.08 2.25 6.07 86.30 0.52 2.77 16 13 N -0.70 -20.70 6.41 -513.88 -3.30 -23.99 16 14 C 0.07 1.52 5.47 86.30 0.47 2.00 16 15 C 0.07 1.43 3.07 31.32 0.10 1.52 16 16 H 0.07 1.34 7.55 -2.39 -0.02 1.32 16 17 C -0.13 -1.73 5.84 31.95 0.19 -1.54 16 18 C -0.15 -2.09 4.31 -8.82 -0.04 -2.13 16 19 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 20 C 0.04 0.63 6.98 72.46 0.51 1.13 16 21 O -0.39 -8.47 11.65 -148.98 -1.74 -10.21 16 22 C 0.02 0.48 7.13 72.45 0.52 1.00 16 23 C 0.03 0.74 4.72 31.92 0.15 0.89 16 24 H 0.12 2.36 8.14 -2.39 -0.02 2.35 16 25 O -0.37 -10.47 10.82 -148.98 -1.61 -12.08 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.34 9.49 8.73 -89.70 -0.78 8.71 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.11 0.87 7.71 -2.38 -0.02 0.85 16 37 H 0.09 1.10 8.08 -2.38 -0.02 1.08 16 38 H 0.07 0.88 7.51 -2.38 -0.02 0.86 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.06 1.41 7.28 -2.39 -0.02 1.39 16 Total: -1.00 -75.75 334.37 -1.67 -77.43 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.22 Total: 12.55 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 3.97 Total: -12.33 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.01 Total: -81.26 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -4.88 Total: -44.57 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -75.75 -1.67 -77.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724555481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.290 kcal (2) G-P(sol) polarization free energy of solvation -75.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds