Wall clock time and date at job start Mon Mar 30 2020 05:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48493 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46881 * 300.00370 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99836 * 3 2 1 7 7 C 1.37883 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99777 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00377 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47622 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47039 * 65.00060 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.08994 * 109.99280 * 305.69702 * 15 14 13 17 17 C 1.56561 * 110.00921 * 184.35613 * 15 14 13 18 18 C 1.49247 * 99.62375 * 219.56012 * 17 15 14 19 19 H 1.08998 * 108.57144 * 291.70106 * 18 17 15 20 20 C 1.48822 * 131.58576 * 153.33513 * 18 17 15 21 21 O 1.45079 * 103.03004 * 203.32510 * 20 18 17 22 22 C 1.45185 * 108.68244 * 25.68565 * 21 20 18 23 23 C 1.52814 * 105.37604 * 7.49302 * 22 21 20 24 24 H 1.09009 * 112.58447 * 83.87737 * 23 22 21 25 25 O 1.42252 * 120.44945 * 219.77380 * 23 22 21 26 26 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47387 * 60.00284 * 9 7 2 28 28 H 1.09000 * 109.47374 * 300.00044 * 9 7 2 29 29 H 1.09008 * 109.46886 * 59.99754 * 11 10 9 30 30 H 1.09008 * 109.46909 * 300.00659 * 11 10 9 31 31 H 1.09001 * 109.47393 * 305.00341 * 12 11 10 32 32 H 1.08998 * 109.47408 * 184.99987 * 12 11 10 33 33 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 34 34 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 35 35 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 36 36 H 1.08999 * 111.37585 * 337.16772 * 17 15 14 37 37 H 1.09003 * 111.36980 * 101.91131 * 17 15 14 38 38 H 1.09003 * 110.79610 * 321.87097 * 20 18 17 39 39 H 1.09001 * 110.79222 * 85.33596 * 20 18 17 40 40 H 1.08999 * 110.26924 * 248.51960 * 22 21 20 41 41 H 1.08998 * 110.34225 * 126.50465 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0024 12 6 2.6480 -5.9562 -0.0030 13 7 3.4081 -5.8885 1.2522 14 6 4.4596 -6.9137 1.2869 15 6 5.2274 -6.8124 2.6065 16 1 5.5991 -5.7971 2.7443 17 6 6.4211 -7.8254 2.6109 18 6 6.3455 -8.2940 4.0258 19 1 6.6256 -7.4687 4.6803 20 6 6.7629 -9.5704 4.6673 21 8 5.9366 -9.6233 5.8586 22 6 4.7302 -8.8508 5.6224 23 6 4.7740 -8.4733 4.1423 24 1 4.3862 -9.2620 3.4974 25 8 4.3616 -7.1805 3.7155 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 0.9445 -4.9818 -0.8923 30 1 0.9452 -4.9831 0.8878 31 1 3.3216 -5.7952 -0.8448 32 1 2.1820 -6.9374 -0.0931 33 1 2.7962 -5.9705 2.0503 34 1 4.0065 -7.9018 1.2056 35 1 5.1456 -6.7589 0.4542 36 1 6.2502 -8.6438 1.9115 37 1 7.3677 -7.3246 2.4075 38 1 6.5552 -10.4179 4.0140 39 1 7.8180 -9.5397 4.9394 40 1 4.7293 -7.9534 6.2410 41 1 3.8469 -9.4541 5.8321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724619499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:03 Heat of formation + Delta-G solvation = -114.365322 kcal Electronic energy + Delta-G solvation = -20750.538606 eV Core-core repulsion = 17438.419622 eV Total energy + Delta-G solvation = -3312.118984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38475 -38.07335 -36.99126 -35.24508 -32.94963 -32.64346 -30.97928 -29.14934 -28.28210 -26.76154 -24.88772 -22.55341 -22.25585 -21.51915 -21.03501 -20.89233 -18.09435 -16.54196 -16.40813 -16.12313 -15.73616 -15.62960 -15.42870 -15.09998 -14.75067 -14.26760 -14.05338 -13.76364 -13.56241 -13.16358 -12.84981 -12.59832 -12.28610 -12.19730 -11.95427 -11.77469 -11.39479 -11.25387 -11.13817 -10.76465 -10.72927 -10.58006 -10.39422 -10.10718 -9.95098 -9.81099 -9.02104 -8.75947 -8.19817 -8.08150 -6.05593 -4.06289 2.79273 3.32935 3.38762 3.39070 3.46318 3.93170 4.03847 4.27449 4.39977 4.54710 4.59248 4.73023 4.82466 4.86067 4.93249 5.03896 5.14267 5.24859 5.26568 5.30968 5.38050 5.40396 5.48201 5.52279 5.62872 5.64624 5.73419 5.94162 6.03663 6.11785 6.22913 6.32378 6.59222 7.14503 7.19216 7.49762 7.59162 7.86706 8.22786 8.67644 9.08833 9.58386 11.06251 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.002929 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.998410 B = 9557.992275 C = 9884.908448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.673 5.673 14 C 0.050 3.950 15 C 0.080 3.920 16 H 0.108 0.892 17 C -0.118 4.118 18 C -0.182 4.182 19 H 0.092 0.908 20 C 0.074 3.926 21 O -0.380 6.380 22 C 0.057 3.943 23 C 0.028 3.972 24 H 0.088 0.912 25 O -0.354 6.354 26 H 0.262 0.738 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.346 0.654 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.661 -21.247 6.509 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.063 4.063 13 N -0.305 5.305 14 C -0.080 4.080 15 C 0.023 3.977 16 H 0.126 0.874 17 C -0.157 4.157 18 C -0.201 4.201 19 H 0.110 0.890 20 C -0.002 4.002 21 O -0.300 6.300 22 C -0.019 4.019 23 C -0.031 4.031 24 H 0.105 0.895 25 O -0.273 6.273 26 H 0.072 0.928 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.165 0.835 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.989 -20.554 6.567 24.685 hybrid contribution -0.564 0.114 -0.164 0.599 sum 11.425 -20.440 6.404 24.276 Atomic orbital electron populations 1.69976 1.06110 1.26933 1.51013 1.24960 0.94971 0.99438 0.95304 0.86288 0.80073 0.82642 0.77539 1.19455 1.20930 1.20877 1.21110 0.94134 0.89343 1.50150 0.91456 1.20192 0.88879 0.83942 0.95129 1.87948 1.34671 1.12349 1.95026 1.22223 0.93861 0.86337 0.98903 1.21979 0.95764 0.95640 0.92964 1.60292 1.16636 1.48901 1.04692 1.22322 0.95498 0.93311 0.96846 1.23912 0.88121 0.99678 0.86038 0.87439 1.21898 0.99566 0.99413 0.94778 1.22888 0.97683 1.00288 0.99255 0.88965 1.21759 0.95852 0.95435 0.87185 1.89223 1.31460 1.73118 1.36161 1.22847 0.88284 0.96832 0.93986 1.24514 0.93571 0.88323 0.96687 0.89474 1.88751 1.57150 1.30968 1.50430 0.92805 0.98015 0.97867 0.94183 0.94752 0.90441 0.94998 0.83470 0.95521 0.89839 0.90056 0.89067 0.91472 0.88973 0.90044 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.46 5.69 36.00 0.20 5.67 16 10 O -0.38 -9.51 10.27 -35.23 -0.36 -9.87 16 11 C 0.06 1.24 6.22 37.15 0.23 1.47 16 12 C 0.07 1.00 6.07 -3.82 -0.02 0.97 16 13 N -0.67 -10.19 6.45 -113.78 -0.73 -10.92 16 14 C 0.05 0.57 5.33 -3.82 -0.02 0.55 16 15 C 0.08 0.84 3.70 -24.81 -0.09 0.74 16 16 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.12 -0.87 6.39 -26.66 -0.17 -1.04 16 18 C -0.18 -1.45 2.94 -91.42 -0.27 -1.72 16 19 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 20 C 0.07 0.54 7.48 35.11 0.26 0.80 16 21 O -0.38 -3.75 11.56 -35.23 -0.41 -4.16 16 22 C 0.06 0.51 7.63 37.06 0.28 0.79 16 23 C 0.03 0.26 4.07 -23.73 -0.10 0.16 16 24 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 25 O -0.35 -4.23 10.79 -35.23 -0.38 -4.61 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.35 5.32 8.39 -39.29 -0.33 4.99 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -33.37 336.22 -8.26 -41.62 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.04 Total: -1.77 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.11 Total: -5.85 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.00 Total: -37.70 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.15 Total: -18.64 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.37 -8.26 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724619499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.742 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds