Wall clock time and date at job start Mon Mar 30 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48493 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46881 * 300.00370 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99836 * 3 2 1 7 7 C 1.37883 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99777 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00377 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47622 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47039 * 65.00060 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.08994 * 109.99280 * 305.69702 * 15 14 13 17 17 C 1.56561 * 110.00921 * 184.35613 * 15 14 13 18 18 C 1.49247 * 99.62375 * 219.56012 * 17 15 14 19 19 H 1.08998 * 108.57144 * 291.70106 * 18 17 15 20 20 C 1.48822 * 131.58576 * 153.33513 * 18 17 15 21 21 O 1.45079 * 103.03004 * 203.32510 * 20 18 17 22 22 C 1.45185 * 108.68244 * 25.68565 * 21 20 18 23 23 C 1.52814 * 105.37604 * 7.49302 * 22 21 20 24 24 H 1.09009 * 112.58447 * 83.87737 * 23 22 21 25 25 O 1.42252 * 120.44945 * 219.77380 * 23 22 21 26 26 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47387 * 60.00284 * 9 7 2 28 28 H 1.09000 * 109.47374 * 300.00044 * 9 7 2 29 29 H 1.09008 * 109.46886 * 59.99754 * 11 10 9 30 30 H 1.09008 * 109.46909 * 300.00659 * 11 10 9 31 31 H 1.09001 * 109.47393 * 305.00341 * 12 11 10 32 32 H 1.08998 * 109.47408 * 184.99987 * 12 11 10 33 33 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 34 34 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 35 35 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 36 36 H 1.08999 * 111.37585 * 337.16772 * 17 15 14 37 37 H 1.09003 * 111.36980 * 101.91131 * 17 15 14 38 38 H 1.09003 * 110.79610 * 321.87097 * 20 18 17 39 39 H 1.09001 * 110.79222 * 85.33596 * 20 18 17 40 40 H 1.08999 * 110.26924 * 248.51960 * 22 21 20 41 41 H 1.08998 * 110.34225 * 126.50465 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0024 12 6 2.6480 -5.9562 -0.0030 13 7 3.4081 -5.8885 1.2522 14 6 4.4596 -6.9137 1.2869 15 6 5.2274 -6.8124 2.6065 16 1 5.5991 -5.7971 2.7443 17 6 6.4211 -7.8254 2.6109 18 6 6.3455 -8.2940 4.0258 19 1 6.6256 -7.4687 4.6803 20 6 6.7629 -9.5704 4.6673 21 8 5.9366 -9.6233 5.8586 22 6 4.7302 -8.8508 5.6224 23 6 4.7740 -8.4733 4.1423 24 1 4.3862 -9.2620 3.4974 25 8 4.3616 -7.1805 3.7155 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 0.9445 -4.9818 -0.8923 30 1 0.9452 -4.9831 0.8878 31 1 3.3216 -5.7952 -0.8448 32 1 2.1820 -6.9374 -0.0931 33 1 2.7962 -5.9705 2.0503 34 1 4.0065 -7.9018 1.2056 35 1 5.1456 -6.7589 0.4542 36 1 6.2502 -8.6438 1.9115 37 1 7.3677 -7.3246 2.4075 38 1 6.5552 -10.4179 4.0140 39 1 7.8180 -9.5397 4.9394 40 1 4.7293 -7.9534 6.2410 41 1 3.8469 -9.4541 5.8321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724619499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:02 Heat of formation + Delta-G solvation = -140.140669 kcal Electronic energy + Delta-G solvation = -20751.656309 eV Core-core repulsion = 17438.419622 eV Total energy + Delta-G solvation = -3313.236687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09108 -39.01951 -38.53284 -36.56654 -34.86901 -33.65463 -32.02326 -30.20060 -29.41658 -28.52099 -25.90679 -24.47009 -23.31488 -22.82094 -21.77215 -21.63419 -18.82031 -18.63326 -17.61345 -17.22872 -16.96974 -16.71381 -16.44830 -16.30232 -16.13540 -15.60265 -15.16451 -15.07377 -14.68065 -14.49213 -13.91451 -13.65658 -13.44039 -13.27237 -13.03232 -12.94916 -12.83434 -12.71726 -12.55303 -12.31467 -12.08755 -11.91190 -11.72333 -11.25765 -11.20250 -10.87076 -10.80164 -10.59107 -10.19619 -9.28104 -8.31897 -6.43870 1.39819 1.41745 1.56746 2.08291 2.35648 2.75830 3.01681 3.07738 3.23131 3.34143 3.59655 3.72699 3.89549 4.04261 4.08972 4.14958 4.22729 4.26977 4.29788 4.47800 4.55055 4.62581 4.62926 4.67593 4.71016 4.78867 4.82551 4.87941 4.92403 4.97668 4.98557 5.18383 5.18852 5.56063 5.58356 5.84738 5.97498 6.11302 6.42275 6.57706 6.86344 7.28415 8.80886 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.002929 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.998410 B = 9557.992275 C = 9884.908448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.396 6.396 11 C 0.054 3.946 12 C 0.076 3.924 13 N -0.699 5.699 14 C 0.054 3.946 15 C 0.076 3.924 16 H 0.086 0.914 17 C -0.105 4.105 18 C -0.170 4.170 19 H 0.074 0.926 20 C 0.072 3.928 21 O -0.399 6.399 22 C 0.056 3.944 23 C 0.020 3.980 24 H 0.101 0.899 25 O -0.380 6.380 26 H 0.271 0.729 27 H -0.015 1.015 28 H -0.019 1.019 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.341 0.659 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.075 -22.020 6.028 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.316 6.316 11 C -0.024 4.024 12 C -0.053 4.053 13 N -0.331 5.331 14 C -0.075 4.075 15 C 0.019 3.981 16 H 0.104 0.896 17 C -0.143 4.143 18 C -0.189 4.189 19 H 0.092 0.908 20 C -0.003 4.003 21 O -0.319 6.319 22 C -0.020 4.020 23 C -0.039 4.039 24 H 0.118 0.882 25 O -0.300 6.300 26 H 0.079 0.921 27 H 0.003 0.997 28 H -0.001 1.001 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.410 -21.361 6.083 25.944 hybrid contribution -1.052 0.271 0.014 1.086 sum 12.358 -21.090 6.097 25.193 Atomic orbital electron populations 1.70077 1.07781 1.28571 1.50745 1.25996 0.96000 1.03479 0.93948 0.85112 0.78645 0.77185 0.78305 1.18837 1.19479 1.19666 1.21417 0.94050 0.90900 1.51914 0.92162 1.19808 0.88705 0.85072 0.93156 1.87901 1.34713 1.13905 1.95061 1.22609 0.95685 0.84714 0.99373 1.21881 0.94818 0.95418 0.93153 1.60279 1.17310 1.51227 1.04323 1.22376 0.94605 0.92970 0.97549 1.23904 0.89061 0.99713 0.85392 0.89557 1.21857 0.98662 0.99101 0.94710 1.22830 0.96551 1.00141 0.99342 0.90759 1.21945 0.96266 0.95491 0.86609 1.89199 1.31917 1.73193 1.37638 1.22855 0.88644 0.96651 0.93875 1.24674 0.94662 0.87601 0.96915 0.88173 1.88723 1.57865 1.32436 1.50992 0.92054 0.99735 1.00100 0.93216 0.94710 0.90448 0.91555 0.84046 0.93891 0.88931 0.88037 0.87663 0.89629 0.87570 0.91183 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.98 45.51 29.54 68.60 2.03 47.53 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.55 -33.68 9.43 25.60 0.24 -33.44 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.17 5.69 71.24 0.41 12.57 16 10 O -0.40 -20.25 10.27 -148.98 -1.53 -21.78 16 11 C 0.05 2.04 6.22 71.98 0.45 2.49 16 12 C 0.08 2.22 6.07 86.30 0.52 2.74 16 13 N -0.70 -20.73 6.45 -513.88 -3.31 -24.04 16 14 C 0.05 1.14 5.33 86.30 0.46 1.60 16 15 C 0.08 1.54 3.70 31.84 0.12 1.66 16 16 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 17 C -0.11 -1.31 6.39 30.64 0.20 -1.11 16 18 C -0.17 -2.43 2.94 -11.31 -0.03 -2.46 16 19 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 20 C 0.07 0.90 7.48 70.66 0.53 1.43 16 21 O -0.40 -7.44 11.56 -148.98 -1.72 -9.16 16 22 C 0.06 0.98 7.63 71.92 0.55 1.53 16 23 C 0.02 0.34 4.07 32.54 0.13 0.48 16 24 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 25 O -0.38 -9.01 10.79 -148.98 -1.61 -10.62 16 26 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 27 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 28 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.34 10.51 8.39 -89.69 -0.75 9.75 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 0.90 7.92 -2.39 -0.02 0.88 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.58 336.22 -1.59 -74.17 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.25 Total: 12.83 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.03 Total: -11.83 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.03 Total: -81.14 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -4.86 Total: -41.56 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.58 -1.59 -74.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724619499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.971 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds