Wall clock time and date at job start Mon Mar 30 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99886 * 3 2 1 5 5 H 1.48508 * 109.47167 * 29.99671 * 3 2 1 6 6 H 1.48498 * 109.47312 * 149.99730 * 3 2 1 7 7 C 1.37870 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00436 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47634 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00111 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47113 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.46502 * 65.00357 * 12 11 10 14 14 C 1.46903 * 110.99431 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46868 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.07302 * 304.92295 * 15 14 13 17 17 C 1.56252 * 110.09182 * 183.31920 * 15 14 13 18 18 C 1.48195 * 102.04452 * 244.75199 * 17 15 14 19 19 H 1.08990 * 106.91088 * 77.56194 * 18 17 15 20 20 C 1.48504 * 133.11137 * 212.96218 * 18 17 15 21 21 O 1.46053 * 103.02156 * 158.98767 * 20 18 17 22 22 C 1.45201 * 109.19336 * 336.20372 * 21 20 18 23 23 C 1.52024 * 105.78481 * 352.64097 * 22 21 20 24 24 H 1.09005 * 111.51675 * 274.13856 * 23 22 21 25 25 O 1.41943 * 122.02644 * 138.79106 * 23 22 21 26 26 H 0.97003 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47221 * 59.99096 * 9 7 2 28 28 H 1.09009 * 109.46632 * 299.99551 * 9 7 2 29 29 H 1.09005 * 109.47183 * 60.00412 * 11 10 9 30 30 H 1.08998 * 109.47703 * 299.99715 * 11 10 9 31 31 H 1.08994 * 109.46976 * 305.00548 * 12 11 10 32 32 H 1.08997 * 109.47382 * 184.99971 * 12 11 10 33 33 H 1.00899 * 110.99781 * 56.04789 * 13 12 11 34 34 H 1.08998 * 109.47259 * 59.99940 * 14 13 12 35 35 H 1.08999 * 109.47286 * 299.99702 * 14 13 12 36 36 H 1.09000 * 110.94188 * 2.82503 * 17 15 14 37 37 H 1.09002 * 110.94758 * 126.48680 * 17 15 14 38 38 H 1.09002 * 110.73875 * 40.55422 * 20 18 17 39 39 H 1.09001 * 110.73201 * 277.42276 * 20 18 17 40 40 H 1.08996 * 110.18720 * 111.71815 * 22 21 20 41 41 H 1.08996 * 110.18577 * 233.48696 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0004 13 7 3.4089 -5.8876 1.2552 14 6 4.4597 -6.9136 1.2903 15 6 5.2291 -6.8106 2.6087 16 1 5.6141 -5.7992 2.7391 17 6 6.4044 -7.8401 2.6261 18 6 6.0044 -8.7474 3.7275 19 1 5.2304 -9.4047 3.3315 20 6 6.7737 -9.5238 4.7329 21 8 5.7907 -9.7630 5.7863 22 6 4.7583 -8.7444 5.7161 23 6 5.2378 -7.7403 4.6803 24 1 5.8933 -6.9906 5.1237 25 8 4.3582 -7.1639 3.7270 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 0.9446 -4.9827 -0.8887 30 1 0.9452 -4.9822 0.8913 31 1 3.3210 -5.7957 -0.8418 32 1 2.1820 -6.9375 -0.0887 33 1 2.7975 -5.9691 2.0537 34 1 5.1453 -6.7603 0.4570 35 1 4.0058 -7.9014 1.2103 36 1 6.4631 -8.3804 1.6813 37 1 7.3506 -7.3476 2.8505 38 1 7.6120 -8.9397 5.1126 39 1 7.1220 -10.4656 4.3090 40 1 3.8136 -9.1876 5.4011 41 1 4.6413 -8.2599 6.6854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724619506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:08 Heat of formation + Delta-G solvation = -113.971158 kcal Electronic energy + Delta-G solvation = -20735.478335 eV Core-core repulsion = 17423.376444 eV Total energy + Delta-G solvation = -3312.101892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34799 -37.99903 -36.99994 -35.29451 -33.01815 -32.64321 -31.00918 -29.17046 -28.30780 -26.75544 -24.87814 -22.25677 -22.11967 -21.80704 -21.50173 -20.74875 -17.69118 -16.69784 -16.34192 -16.33964 -15.77872 -15.59233 -15.30883 -14.97804 -14.83829 -14.37206 -14.01968 -13.70778 -13.53860 -13.23035 -12.90007 -12.62653 -12.23752 -12.11619 -12.01363 -11.82250 -11.42982 -11.18817 -10.99292 -10.79338 -10.68603 -10.59598 -10.40081 -10.10779 -9.96272 -9.87438 -9.03647 -8.75597 -8.20720 -8.08202 -6.05622 -4.06481 2.83134 3.33832 3.35817 3.38464 3.44645 3.93466 4.07140 4.21575 4.39718 4.49732 4.65254 4.78601 4.80138 4.88417 4.95818 5.06333 5.19540 5.24427 5.28199 5.30816 5.38498 5.42241 5.50783 5.51363 5.61630 5.69273 5.75070 5.87429 6.04122 6.12177 6.21216 6.32581 6.52177 7.13903 7.18676 7.49705 7.58322 7.86215 8.22668 8.67572 9.08271 9.58152 11.06159 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.002934 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.171228 B = 9540.634834 C = 9879.841679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.381 6.381 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.675 5.675 14 C 0.065 3.935 15 C 0.078 3.922 16 H 0.093 0.907 17 C -0.118 4.118 18 C -0.183 4.183 19 H 0.082 0.918 20 C 0.077 3.923 21 O -0.382 6.382 22 C 0.061 3.939 23 C 0.029 3.971 24 H 0.087 0.913 25 O -0.351 6.351 26 H 0.263 0.737 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.347 0.653 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 -20.168 7.246 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.306 5.306 14 C -0.065 4.065 15 C 0.021 3.979 16 H 0.111 0.889 17 C -0.157 4.157 18 C -0.202 4.202 19 H 0.100 0.900 20 C 0.001 3.999 21 O -0.302 6.302 22 C -0.015 4.015 23 C -0.030 4.030 24 H 0.104 0.896 25 O -0.271 6.271 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.166 0.834 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.451 -19.650 7.175 24.344 hybrid contribution -0.484 0.224 -0.072 0.538 sum 11.967 -19.426 7.103 23.897 Atomic orbital electron populations 1.69969 1.06109 1.27041 1.50917 1.24954 0.94971 0.99424 0.95296 0.86339 0.79701 0.82302 0.78157 1.20535 1.21142 1.19600 1.21069 0.94095 0.89363 1.50293 0.91516 1.20186 0.88872 0.83922 0.95130 1.87946 1.34678 1.12359 1.95029 1.22223 0.93861 0.86313 0.98924 1.21984 0.95770 0.95708 0.92918 1.60332 1.16691 1.48845 1.04773 1.22083 0.95332 0.93588 0.95505 1.23932 0.88771 0.98728 0.86459 0.88944 1.21571 0.99101 0.96612 0.98369 1.22458 1.01556 0.98900 0.97242 0.89997 1.21791 0.91080 1.00105 0.86920 1.89346 1.36857 1.50416 1.53566 1.22602 0.91872 0.88602 0.98456 1.24159 0.91862 0.94715 0.92229 0.89561 1.88951 1.30157 1.80851 1.27092 0.92748 0.98018 0.97867 0.94168 0.94732 0.90402 0.94901 0.83448 0.89548 0.95080 0.89587 0.89980 0.91267 0.88979 0.90345 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.42 9.43 -34.44 -0.32 -15.75 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.19 5.47 5.69 36.00 0.20 5.67 16 10 O -0.38 -9.50 10.27 -35.23 -0.36 -9.87 16 11 C 0.07 1.24 6.22 37.16 0.23 1.47 16 12 C 0.07 0.99 6.07 -3.82 -0.02 0.97 16 13 N -0.67 -10.25 6.45 -113.78 -0.73 -10.99 16 14 C 0.06 0.74 5.25 -3.82 -0.02 0.72 16 15 C 0.08 0.83 3.65 -24.99 -0.09 0.74 16 16 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.12 -0.90 6.45 -27.32 -0.18 -1.07 16 18 C -0.18 -1.48 2.95 -92.15 -0.27 -1.75 16 19 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 20 C 0.08 0.57 7.59 34.96 0.27 0.83 16 21 O -0.38 -3.80 11.57 -35.23 -0.41 -4.21 16 22 C 0.06 0.55 7.61 36.66 0.28 0.83 16 23 C 0.03 0.28 3.97 -24.23 -0.10 0.19 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 O -0.35 -4.26 10.85 -35.23 -0.38 -4.64 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.00 0.10 8.14 -51.92 -0.42 -0.32 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.35 5.36 8.38 -39.29 -0.33 5.03 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -33.30 335.97 -8.26 -41.56 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.03 Total: -1.75 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.12 Total: -5.64 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.00 Total: -37.75 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.15 Total: -18.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.30 -8.26 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724619506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.409 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds