Wall clock time and date at job start Mon Mar 30 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99886 * 3 2 1 5 5 H 1.48508 * 109.47167 * 29.99671 * 3 2 1 6 6 H 1.48498 * 109.47312 * 149.99730 * 3 2 1 7 7 C 1.37870 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00436 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47634 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00111 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47113 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.46502 * 65.00357 * 12 11 10 14 14 C 1.46903 * 110.99431 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46868 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.07302 * 304.92295 * 15 14 13 17 17 C 1.56252 * 110.09182 * 183.31920 * 15 14 13 18 18 C 1.48195 * 102.04452 * 244.75199 * 17 15 14 19 19 H 1.08990 * 106.91088 * 77.56194 * 18 17 15 20 20 C 1.48504 * 133.11137 * 212.96218 * 18 17 15 21 21 O 1.46053 * 103.02156 * 158.98767 * 20 18 17 22 22 C 1.45201 * 109.19336 * 336.20372 * 21 20 18 23 23 C 1.52024 * 105.78481 * 352.64097 * 22 21 20 24 24 H 1.09005 * 111.51675 * 274.13856 * 23 22 21 25 25 O 1.41943 * 122.02644 * 138.79106 * 23 22 21 26 26 H 0.97003 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47221 * 59.99096 * 9 7 2 28 28 H 1.09009 * 109.46632 * 299.99551 * 9 7 2 29 29 H 1.09005 * 109.47183 * 60.00412 * 11 10 9 30 30 H 1.08998 * 109.47703 * 299.99715 * 11 10 9 31 31 H 1.08994 * 109.46976 * 305.00548 * 12 11 10 32 32 H 1.08997 * 109.47382 * 184.99971 * 12 11 10 33 33 H 1.00899 * 110.99781 * 56.04789 * 13 12 11 34 34 H 1.08998 * 109.47259 * 59.99940 * 14 13 12 35 35 H 1.08999 * 109.47286 * 299.99702 * 14 13 12 36 36 H 1.09000 * 110.94188 * 2.82503 * 17 15 14 37 37 H 1.09002 * 110.94758 * 126.48680 * 17 15 14 38 38 H 1.09002 * 110.73875 * 40.55422 * 20 18 17 39 39 H 1.09001 * 110.73201 * 277.42276 * 20 18 17 40 40 H 1.08996 * 110.18720 * 111.71815 * 22 21 20 41 41 H 1.08996 * 110.18577 * 233.48696 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0004 13 7 3.4089 -5.8876 1.2552 14 6 4.4597 -6.9136 1.2903 15 6 5.2291 -6.8106 2.6087 16 1 5.6141 -5.7992 2.7391 17 6 6.4044 -7.8401 2.6261 18 6 6.0044 -8.7474 3.7275 19 1 5.2304 -9.4047 3.3315 20 6 6.7737 -9.5238 4.7329 21 8 5.7907 -9.7630 5.7863 22 6 4.7583 -8.7444 5.7161 23 6 5.2378 -7.7403 4.6803 24 1 5.8933 -6.9906 5.1237 25 8 4.3582 -7.1639 3.7270 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 0.9446 -4.9827 -0.8887 30 1 0.9452 -4.9822 0.8913 31 1 3.3210 -5.7957 -0.8418 32 1 2.1820 -6.9375 -0.0887 33 1 2.7975 -5.9691 2.0537 34 1 5.1453 -6.7603 0.4570 35 1 4.0058 -7.9014 1.2103 36 1 6.4631 -8.3804 1.6813 37 1 7.3506 -7.3476 2.8505 38 1 7.6120 -8.9397 5.1126 39 1 7.1220 -10.4656 4.3090 40 1 3.8136 -9.1876 5.4011 41 1 4.6413 -8.2599 6.6854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724619506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:08 Heat of formation + Delta-G solvation = -139.649560 kcal Electronic energy + Delta-G solvation = -20736.591834 eV Core-core repulsion = 17423.376444 eV Total energy + Delta-G solvation = -3313.215391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06957 -38.98996 -38.50123 -36.62507 -34.87438 -33.73371 -32.06168 -30.20509 -29.47180 -28.52889 -25.89928 -24.46846 -22.91026 -22.80217 -22.60022 -21.46834 -18.64651 -18.40346 -17.70355 -17.32652 -17.04286 -16.74862 -16.57497 -16.20673 -16.03940 -15.62846 -15.27216 -14.98423 -14.70593 -14.44840 -14.00347 -13.62998 -13.53387 -13.17510 -13.11417 -12.89977 -12.82440 -12.74461 -12.63759 -12.31263 -12.12254 -11.81386 -11.58446 -11.31453 -11.25333 -10.86095 -10.82835 -10.62981 -10.19687 -9.31245 -8.31498 -6.43688 1.40002 1.43416 1.55700 2.10652 2.35793 2.72146 3.02072 3.06702 3.22324 3.31701 3.52400 3.75049 3.94180 3.97205 4.07599 4.16026 4.25640 4.27691 4.29645 4.51989 4.57145 4.59401 4.63707 4.68138 4.73547 4.76287 4.80730 4.83164 4.94098 4.97634 5.02451 5.11210 5.18906 5.55022 5.56010 5.77133 5.97517 6.08167 6.39576 6.57503 6.86067 7.28561 8.81069 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.002934 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.171228 B = 9540.634834 C = 9879.841679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.396 6.396 11 C 0.054 3.946 12 C 0.075 3.925 13 N -0.699 5.699 14 C 0.067 3.933 15 C 0.075 3.925 16 H 0.077 0.923 17 C -0.108 4.108 18 C -0.167 4.167 19 H 0.068 0.932 20 C 0.075 3.925 21 O -0.400 6.400 22 C 0.062 3.938 23 C 0.018 3.982 24 H 0.091 0.909 25 O -0.377 6.377 26 H 0.271 0.729 27 H -0.015 1.015 28 H -0.019 1.019 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.014 -20.469 7.063 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.315 6.315 11 C -0.023 4.023 12 C -0.053 4.053 13 N -0.331 5.331 14 C -0.062 4.062 15 C 0.018 3.982 16 H 0.095 0.905 17 C -0.146 4.146 18 C -0.186 4.186 19 H 0.087 0.913 20 C 0.000 4.000 21 O -0.321 6.321 22 C -0.015 4.015 23 C -0.041 4.041 24 H 0.109 0.891 25 O -0.296 6.296 26 H 0.079 0.921 27 H 0.002 0.998 28 H -0.001 1.001 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.222 -19.986 6.987 25.505 hybrid contribution -1.082 0.228 0.003 1.106 sum 13.139 -19.758 6.990 24.736 Atomic orbital electron populations 1.70076 1.07804 1.28633 1.50686 1.25997 0.95996 1.03491 0.93934 0.85158 0.78339 0.76858 0.78896 1.19124 1.19895 1.18881 1.21389 0.94076 0.90881 1.52015 0.92096 1.19807 0.88708 0.85069 0.93148 1.87898 1.34695 1.13875 1.95061 1.22599 0.95651 0.84709 0.99385 1.21890 0.94868 0.95431 0.93151 1.60330 1.17322 1.51008 1.04394 1.22156 0.94533 0.92981 0.96488 1.23949 0.89496 0.99033 0.85728 0.90471 1.21532 0.98348 0.95731 0.98962 1.22403 1.01119 0.98130 0.96935 0.91310 1.21986 0.90783 1.01142 0.86135 1.89322 1.37462 1.50776 1.54551 1.22606 0.91566 0.88426 0.98864 1.24307 0.91981 0.95243 0.92566 0.89081 1.88922 1.31480 1.81198 1.28040 0.92058 0.99767 1.00104 0.93201 0.94716 0.90286 0.91637 0.84064 0.88411 0.94060 0.87949 0.88303 0.89772 0.87290 0.90998 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.44 0.28 -57.08 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.98 45.32 29.54 68.60 2.03 47.35 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -33.63 9.43 25.60 0.24 -33.39 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 12.16 5.69 71.24 0.41 12.56 16 10 O -0.40 -20.19 10.27 -148.98 -1.53 -21.72 16 11 C 0.05 2.07 6.22 71.98 0.45 2.51 16 12 C 0.08 2.22 6.07 86.30 0.52 2.74 16 13 N -0.70 -20.89 6.45 -513.88 -3.32 -24.21 16 14 C 0.07 1.46 5.25 86.30 0.45 1.91 16 15 C 0.07 1.52 3.65 31.72 0.12 1.64 16 16 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 17 C -0.11 -1.39 6.45 30.21 0.19 -1.20 16 18 C -0.17 -2.41 2.95 -11.79 -0.03 -2.44 16 19 H 0.07 1.18 7.94 -2.39 -0.02 1.16 16 20 C 0.07 0.95 7.59 70.56 0.54 1.48 16 21 O -0.40 -7.51 11.57 -148.98 -1.72 -9.24 16 22 C 0.06 1.09 7.61 71.66 0.55 1.64 16 23 C 0.02 0.33 3.97 32.21 0.13 0.46 16 24 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 25 O -0.38 -9.06 10.85 -148.96 -1.62 -10.68 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 29 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.34 10.64 8.38 -89.69 -0.75 9.88 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 1.02 7.77 -2.39 -0.02 1.00 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.09 335.97 -1.61 -73.70 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.25 Total: 13.26 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.02 Total: -11.39 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.03 Total: -81.29 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -4.87 Total: -41.63 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.09 -1.61 -73.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724619506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.946 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds