Wall clock time and date at job start Mon Mar 30 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00380 * 2 1 4 4 H 1.48501 * 109.47155 * 269.99460 * 3 2 1 5 5 H 1.48498 * 109.47217 * 29.99485 * 3 2 1 6 6 H 1.48502 * 109.47505 * 149.99728 * 3 2 1 7 7 C 1.37880 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00366 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46630 * 300.00133 * 9 7 2 11 11 O 1.42898 * 109.47036 * 59.99728 * 9 7 2 12 12 C 1.52992 * 109.47371 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.47316 * 180.02562 * 12 9 7 14 14 C 1.46419 * 110.99930 * 296.30264 * 13 12 9 15 15 C 1.53276 * 109.77095 * 161.81593 * 14 13 12 16 16 S 1.81892 * 108.41044 * 62.16967 * 15 14 13 17 17 C 1.81763 * 102.00651 * 308.77040 * 16 15 14 18 18 H 1.08999 * 110.08586 * 171.19802 * 17 16 15 19 19 C 1.52953 * 109.52122 * 291.79767 * 17 16 15 20 20 C 1.53046 * 109.31596 * 179.77213 * 19 17 16 21 21 C 1.52956 * 109.60684 * 300.30879 * 20 19 17 22 22 C 1.53016 * 109.63692 * 59.48673 * 21 20 19 23 23 C 1.46616 * 111.00233 * 170.18970 * 13 12 9 24 24 H 1.08991 * 109.59962 * 77.30965 * 23 13 12 25 25 H 0.97001 * 119.99356 * 0.02562 * 1 2 3 26 26 H 0.96704 * 114.00136 * 60.00102 * 11 9 7 27 27 H 1.09000 * 109.47304 * 60.00214 * 12 9 7 28 28 H 1.09001 * 109.47460 * 300.00259 * 12 9 7 29 29 H 1.08996 * 109.41804 * 281.90745 * 14 13 12 30 30 H 1.09004 * 109.41862 * 41.72301 * 14 13 12 31 31 H 1.08994 * 109.67795 * 302.43371 * 15 14 13 32 32 H 1.09002 * 109.67665 * 181.89730 * 15 14 13 33 33 H 1.09001 * 109.49270 * 299.72680 * 19 17 16 34 34 H 1.08998 * 109.49437 * 59.82161 * 19 17 16 35 35 H 1.08997 * 109.45115 * 60.35482 * 20 19 17 36 36 H 1.08998 * 109.44687 * 180.29530 * 20 19 17 37 37 H 1.09005 * 109.44348 * 179.53513 * 21 20 19 38 38 H 1.08999 * 109.44437 * 299.46655 * 21 20 19 39 39 H 1.09000 * 109.51295 * 179.87550 * 22 21 20 40 40 H 1.08994 * 109.51206 * 59.71987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5106 -4.9343 -0.0001 14 6 0.7232 -5.0862 1.2250 15 6 -0.3561 -6.1548 1.0186 16 16 0.4646 -7.7414 0.6753 17 6 1.6081 -7.2935 -0.6647 18 1 2.2853 -8.1221 -0.8716 19 6 0.8106 -6.9549 -1.9252 20 6 1.7774 -6.5730 -3.0486 21 6 2.6075 -5.3614 -2.6216 22 6 3.3955 -5.6988 -1.3540 23 6 2.4159 -6.0637 -0.2333 24 1 2.9635 -6.2885 0.6819 25 1 -0.4849 0.8401 -0.0004 26 1 0.9223 -2.5300 -1.9975 27 1 2.8717 -3.6045 0.8905 28 1 2.8718 -3.6045 -0.8894 29 1 1.3789 -5.3865 2.0423 30 1 0.2499 -4.1358 1.4718 31 1 -0.9891 -5.8790 0.1753 32 1 -0.9626 -6.2428 1.9200 33 1 0.2245 -7.8223 -2.2288 34 1 0.1432 -6.1180 -1.7196 35 1 2.4409 -7.4122 -3.2573 36 1 1.2110 -6.3262 -3.9465 37 1 3.3008 -5.0969 -3.4201 38 1 1.9447 -4.5193 -2.4228 39 1 3.9880 -4.8349 -1.0528 40 1 4.0558 -6.5436 -1.5499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809576497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:41 Heat of formation + Delta-G solvation = -51.950908 kcal Electronic energy + Delta-G solvation = -20538.943863 eV Core-core repulsion = 17672.284242 eV Total energy + Delta-G solvation = -2866.659621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61066 -36.15451 -34.62136 -32.11825 -31.65423 -30.31538 -29.40656 -27.24028 -24.46081 -22.92705 -22.21880 -21.85116 -20.16226 -18.60702 -17.07105 -16.56386 -15.40330 -15.27133 -14.83764 -14.60167 -14.56995 -13.99770 -13.76521 -13.32496 -13.13063 -12.80741 -12.47189 -12.22166 -12.20506 -11.89515 -11.67948 -11.27212 -11.17346 -10.96077 -10.91465 -10.78190 -10.70742 -10.36734 -10.11836 -10.01104 -9.98510 -9.22042 -8.95378 -8.58739 -8.15679 -7.71079 -7.47434 -6.03870 -4.22144 2.01516 2.71084 3.24862 3.32436 3.34413 4.15582 4.39687 4.75671 4.93884 5.09890 5.23478 5.24037 5.32889 5.40376 5.44804 5.51356 5.57558 5.60283 5.68314 5.83059 5.95609 5.98381 6.08182 6.12717 6.22799 6.27341 6.32854 6.37656 6.42096 6.50954 6.54595 6.77796 6.79836 7.49706 7.55059 7.74809 7.83967 8.16629 8.81554 9.42266 9.58404 11.00058 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.005962 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.559695 B = 4695.586060 C = 5162.838554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.053 0.947 11 O -0.552 6.552 12 C 0.026 3.974 13 N -0.527 5.527 14 C 0.055 3.945 15 C -0.064 4.064 16 S -0.298 6.298 17 C -0.028 4.028 18 H 0.100 0.900 19 C -0.104 4.104 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.115 4.115 23 C 0.089 3.911 24 H 0.044 0.956 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -12.863 -2.437 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.071 0.929 11 O -0.354 6.354 12 C -0.101 4.101 13 N -0.252 5.252 14 C -0.075 4.075 15 C -0.213 4.213 16 S -0.068 6.068 17 C -0.157 4.157 18 H 0.118 0.882 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.021 4.021 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.398 -13.835 -1.792 14.155 hybrid contribution 1.759 2.052 -0.123 2.705 sum 4.157 -11.783 -1.914 12.640 Atomic orbital electron populations 1.70075 1.05878 1.26408 1.46952 1.25005 0.94667 0.99027 0.93831 0.86698 0.79956 0.83632 0.78222 1.20513 1.21139 1.19923 1.21637 0.93111 0.91612 1.54955 0.92812 1.19340 0.87742 0.88547 0.86411 0.92903 1.86572 1.37656 1.96279 1.14867 1.23222 0.97631 0.89081 1.00145 1.61189 1.26126 1.01920 1.35955 1.22230 0.94900 0.99544 0.90813 1.23503 0.99802 0.92774 1.05187 1.86571 1.51229 1.20108 1.48891 1.23252 0.97295 0.99784 0.95339 0.88218 1.21717 0.97881 1.02078 0.92614 1.21456 0.97801 0.97733 0.97740 1.21538 0.98889 0.99347 0.95846 1.21784 0.97010 1.01248 0.95333 1.21813 0.92320 0.90741 0.97227 0.93807 0.92999 0.81620 0.95773 0.90357 0.94610 0.88378 0.88794 0.88245 0.92259 0.89493 0.93059 0.92017 0.92803 0.89397 0.91012 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 12.84 55.43 0.71 -24.01 16 2 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.57 -15.17 8.76 -34.44 -0.30 -15.47 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 9 C 0.24 5.65 2.69 -27.89 -0.08 5.58 16 10 H 0.05 1.40 6.17 -51.93 -0.32 1.08 16 11 O -0.55 -13.49 12.59 -35.23 -0.44 -13.93 16 12 C 0.03 0.50 3.47 -3.83 -0.01 0.48 16 13 N -0.53 -8.76 2.67 -226.74 -0.61 -9.37 16 14 C 0.05 0.90 5.30 -3.94 -0.02 0.88 16 15 C -0.06 -0.95 6.33 37.30 0.24 -0.72 16 16 S -0.30 -4.32 21.79 -107.50 -2.34 -6.66 16 17 C -0.03 -0.37 2.74 -26.58 -0.07 -0.45 16 18 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.10 -1.38 4.98 -26.73 -0.13 -1.51 16 20 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 21 C -0.12 -1.56 5.38 -26.75 -0.14 -1.70 16 22 C -0.11 -1.50 4.87 -26.59 -0.13 -1.63 16 23 C 0.09 1.29 2.18 -67.56 -0.15 1.15 16 24 H 0.04 0.67 7.93 -51.93 -0.41 0.26 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.34 7.56 8.57 45.56 0.39 7.95 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.44 4.65 -51.93 -0.24 1.20 16 29 H 0.04 0.58 7.93 -51.93 -0.41 0.17 16 30 H 0.10 1.84 5.75 -51.93 -0.30 1.54 16 31 H 0.09 1.48 7.56 -51.93 -0.39 1.09 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.37 6.63 -51.93 -0.34 1.03 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.38 6.00 -51.93 -0.31 1.07 16 39 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 307.35 15.07 4.63 4.63 Total: -1.00 -28.03 307.35 -9.71 -37.74 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.59 Total: 8.62 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.06 Total: -12.73 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.11 Total: -33.38 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.44 Total: -13.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -2.34 Total: -6.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.03 -9.71 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.206 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds