Wall clock time and date at job start Mon Mar 30 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00380 * 2 1 4 4 H 1.48501 * 109.47155 * 269.99460 * 3 2 1 5 5 H 1.48498 * 109.47217 * 29.99485 * 3 2 1 6 6 H 1.48502 * 109.47505 * 149.99728 * 3 2 1 7 7 C 1.37880 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00366 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46630 * 300.00133 * 9 7 2 11 11 O 1.42898 * 109.47036 * 59.99728 * 9 7 2 12 12 C 1.52992 * 109.47371 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.47316 * 180.02562 * 12 9 7 14 14 C 1.46419 * 110.99930 * 296.30264 * 13 12 9 15 15 C 1.53276 * 109.77095 * 161.81593 * 14 13 12 16 16 S 1.81892 * 108.41044 * 62.16967 * 15 14 13 17 17 C 1.81763 * 102.00651 * 308.77040 * 16 15 14 18 18 H 1.08999 * 110.08586 * 171.19802 * 17 16 15 19 19 C 1.52953 * 109.52122 * 291.79767 * 17 16 15 20 20 C 1.53046 * 109.31596 * 179.77213 * 19 17 16 21 21 C 1.52956 * 109.60684 * 300.30879 * 20 19 17 22 22 C 1.53016 * 109.63692 * 59.48673 * 21 20 19 23 23 C 1.46616 * 111.00233 * 170.18970 * 13 12 9 24 24 H 1.08991 * 109.59962 * 77.30965 * 23 13 12 25 25 H 0.97001 * 119.99356 * 0.02562 * 1 2 3 26 26 H 0.96704 * 114.00136 * 60.00102 * 11 9 7 27 27 H 1.09000 * 109.47304 * 60.00214 * 12 9 7 28 28 H 1.09001 * 109.47460 * 300.00259 * 12 9 7 29 29 H 1.08996 * 109.41804 * 281.90745 * 14 13 12 30 30 H 1.09004 * 109.41862 * 41.72301 * 14 13 12 31 31 H 1.08994 * 109.67795 * 302.43371 * 15 14 13 32 32 H 1.09002 * 109.67665 * 181.89730 * 15 14 13 33 33 H 1.09001 * 109.49270 * 299.72680 * 19 17 16 34 34 H 1.08998 * 109.49437 * 59.82161 * 19 17 16 35 35 H 1.08997 * 109.45115 * 60.35482 * 20 19 17 36 36 H 1.08998 * 109.44687 * 180.29530 * 20 19 17 37 37 H 1.09005 * 109.44348 * 179.53513 * 21 20 19 38 38 H 1.08999 * 109.44437 * 299.46655 * 21 20 19 39 39 H 1.09000 * 109.51295 * 179.87550 * 22 21 20 40 40 H 1.08994 * 109.51206 * 59.71987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5106 -4.9343 -0.0001 14 6 0.7232 -5.0862 1.2250 15 6 -0.3561 -6.1548 1.0186 16 16 0.4646 -7.7414 0.6753 17 6 1.6081 -7.2935 -0.6647 18 1 2.2853 -8.1221 -0.8716 19 6 0.8106 -6.9549 -1.9252 20 6 1.7774 -6.5730 -3.0486 21 6 2.6075 -5.3614 -2.6216 22 6 3.3955 -5.6988 -1.3540 23 6 2.4159 -6.0637 -0.2333 24 1 2.9635 -6.2885 0.6819 25 1 -0.4849 0.8401 -0.0004 26 1 0.9223 -2.5300 -1.9975 27 1 2.8717 -3.6045 0.8905 28 1 2.8718 -3.6045 -0.8894 29 1 1.3789 -5.3865 2.0423 30 1 0.2499 -4.1358 1.4718 31 1 -0.9891 -5.8790 0.1753 32 1 -0.9626 -6.2428 1.9200 33 1 0.2245 -7.8223 -2.2288 34 1 0.1432 -6.1180 -1.7196 35 1 2.4409 -7.4122 -3.2573 36 1 1.2110 -6.3262 -3.9465 37 1 3.3008 -5.0969 -3.4201 38 1 1.9447 -4.5193 -2.4228 39 1 3.9880 -4.8349 -1.0528 40 1 4.0558 -6.5436 -1.5499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809576497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:41 Heat of formation + Delta-G solvation = -69.283630 kcal Electronic energy + Delta-G solvation = -20539.695466 eV Core-core repulsion = 17672.284242 eV Total energy + Delta-G solvation = -2867.411224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86350 -37.76961 -36.12601 -34.19576 -32.91518 -31.45984 -30.82661 -28.89409 -26.19047 -24.26142 -23.36710 -23.11517 -21.74926 -19.86414 -18.89744 -17.84373 -16.86540 -16.63231 -16.54817 -16.09909 -15.85823 -15.66763 -15.34515 -14.60837 -14.38954 -14.25034 -13.77793 -13.54607 -13.42934 -13.19191 -13.07010 -12.97677 -12.82023 -12.64232 -12.41220 -12.18338 -12.03120 -11.92458 -11.46605 -11.33850 -11.06501 -10.84211 -10.62321 -10.37212 -10.05870 -9.11483 -8.66278 -8.12028 -6.37078 0.86153 1.40270 1.41251 1.51167 1.53909 2.38364 2.87522 3.14688 3.63932 3.80421 3.97219 4.01258 4.15265 4.22778 4.27408 4.32002 4.40355 4.48784 4.51563 4.55108 4.60074 4.70427 4.78653 4.83397 4.91831 4.94504 5.05893 5.15056 5.30198 5.32853 5.41641 5.43331 5.61789 5.69412 5.80805 6.01036 6.20353 6.30558 6.76242 7.37095 7.65335 8.91916 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.005962 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.559695 B = 4695.586060 C = 5162.838554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.029 3.971 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.586 4.586 8 H 0.057 0.943 9 C 0.240 3.760 10 H 0.020 0.980 11 O -0.565 6.565 12 C 0.047 3.953 13 N -0.528 5.528 14 C 0.057 3.943 15 C -0.059 4.059 16 S -0.297 6.297 17 C -0.023 4.023 18 H 0.123 0.877 19 C -0.099 4.099 20 C -0.102 4.102 21 C -0.117 4.117 22 C -0.111 4.111 23 C 0.088 3.912 24 H 0.040 0.960 25 H 0.260 0.740 26 H 0.349 0.651 27 H 0.015 0.985 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -14.108 -3.340 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.625 4.625 8 H 0.075 0.925 9 C 0.182 3.818 10 H 0.037 0.963 11 O -0.368 6.368 12 C -0.080 4.080 13 N -0.253 5.253 14 C -0.073 4.073 15 C -0.207 4.207 16 S -0.067 6.067 17 C -0.152 4.152 18 H 0.140 0.860 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.022 4.022 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.194 0.806 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.074 -15.096 -2.698 15.867 hybrid contribution 1.226 2.385 0.160 2.687 sum 5.300 -12.711 -2.538 14.004 Atomic orbital electron populations 1.70215 1.07541 1.27185 1.48509 1.25826 0.95402 1.02643 0.93504 0.85631 0.78722 0.79217 0.78426 1.19787 1.21139 1.19092 1.22049 0.93451 0.92897 1.54085 0.92491 1.19160 0.87698 0.89836 0.85064 0.96277 1.86521 1.38380 1.96405 1.15463 1.22800 0.96161 0.88863 1.00174 1.61129 1.26439 1.01794 1.35893 1.22158 0.95332 0.98775 0.91002 1.23387 0.99182 0.92729 1.05437 1.86565 1.51454 1.19158 1.49532 1.23331 0.97198 0.99801 0.94850 0.85951 1.21636 0.97820 1.01266 0.93062 1.21429 0.97674 0.97908 0.97149 1.21494 0.98766 0.98851 0.96357 1.21784 0.96754 1.01961 0.94531 1.21909 0.92328 0.90136 0.97797 0.94170 0.93119 0.80647 0.96632 0.89270 0.94352 0.91280 0.90045 0.86803 0.91289 0.92522 0.90711 0.91628 0.91344 0.92466 0.91977 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.96 12.84 21.45 0.28 -52.68 16 2 C 0.03 1.58 5.40 84.66 0.46 2.04 16 3 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.59 -31.36 8.76 25.60 0.22 -31.14 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.24 11.81 2.69 29.85 0.08 11.89 16 10 H 0.02 1.08 6.17 -2.39 -0.01 1.07 16 11 O -0.56 -28.46 12.59 -148.98 -1.88 -30.34 16 12 C 0.05 1.83 3.47 86.30 0.30 2.13 16 13 N -0.53 -17.62 2.67 -871.28 -2.33 -19.95 16 14 C 0.06 1.94 5.30 86.49 0.46 2.40 16 15 C -0.06 -1.75 6.33 72.07 0.46 -1.29 16 16 S -0.30 -8.16 21.79 -56.49 -1.23 -9.39 16 17 C -0.02 -0.57 2.74 30.69 0.08 -0.48 16 18 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 19 C -0.10 -2.43 4.98 30.59 0.15 -2.27 16 20 C -0.10 -2.16 5.92 30.59 0.18 -1.98 16 21 C -0.12 -2.83 5.38 30.58 0.16 -2.66 16 22 C -0.11 -2.64 4.87 30.69 0.15 -2.49 16 23 C 0.09 2.41 2.18 45.17 0.10 2.51 16 24 H 0.04 1.16 7.93 -2.39 -0.02 1.14 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.35 15.90 8.57 -74.05 -0.63 15.26 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 3.26 4.65 -2.39 -0.01 3.25 16 29 H 0.04 1.27 7.93 -2.39 -0.02 1.25 16 30 H 0.07 2.76 5.75 -2.38 -0.01 2.74 16 31 H 0.08 2.63 7.56 -2.39 -0.02 2.61 16 32 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.76 6.63 -2.39 -0.02 1.75 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.75 6.00 -2.39 -0.01 1.74 16 39 H 0.06 1.61 6.21 -2.39 -0.01 1.59 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.45 307.35 0.07 -60.38 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.40 Total: 28.57 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 2.81 Total: -21.36 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.05 Total: -72.63 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.88 Total: -30.34 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.23 Total: -9.39 kcal Total: -60.45 0.07 -60.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.906 kcal (2) G-P(sol) polarization free energy of solvation -60.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds