Wall clock time and date at job start Mon Mar 30 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35048 * 126.39491 * 2 1 4 4 N 1.30500 * 108.69827 * 179.76369 * 3 2 1 5 5 C 1.34129 * 109.25353 * 0.38501 * 4 3 2 6 6 C 1.50704 * 125.98459 * 179.87746 * 5 4 3 7 7 N 1.46902 * 109.47233 * 274.68979 * 6 5 4 8 8 C 1.46900 * 110.99670 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46845 * 179.97438 * 8 7 6 10 10 C 1.38628 * 119.75010 * 269.72679 * 9 8 7 11 11 C 1.37618 * 120.24847 * 179.72116 * 10 9 8 12 12 C 1.40716 * 119.74303 * 0.57171 * 11 10 9 13 13 C 1.41393 * 120.24510 * 179.68073 * 12 11 10 14 14 H 1.08000 * 120.00302 * 204.40926 * 13 12 11 15 15 C 1.39945 * 120.00231 * 24.41065 * 13 12 11 16 16 N 1.30823 * 119.99688 * 17.84190 * 15 13 12 17 17 Si 1.86798 * 120.00141 * 197.84823 * 15 13 12 18 18 H 1.48499 * 109.47373 * 59.99602 * 17 15 13 19 19 H 1.48509 * 109.47128 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46996 * 299.99312 * 17 15 13 21 21 C 1.40717 * 119.51170 * 359.70573 * 12 11 10 22 22 C 1.37613 * 119.74644 * 359.97438 * 21 12 11 23 23 C 1.34667 * 108.02165 * 359.61717 * 5 4 3 24 24 H 1.09005 * 109.47488 * 269.99737 * 1 2 3 25 25 H 1.09001 * 109.47761 * 29.99666 * 1 2 3 26 26 H 1.09005 * 109.47416 * 149.99999 * 1 2 3 27 27 H 1.08004 * 125.65026 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46746 * 154.68943 * 6 5 4 29 29 H 1.08995 * 109.47233 * 34.69266 * 6 5 4 30 30 H 1.00900 * 110.99634 * 303.95378 * 7 6 5 31 31 H 1.08996 * 109.47157 * 299.99721 * 8 7 6 32 32 H 1.08995 * 109.47075 * 60.00108 * 8 7 6 33 33 H 1.08002 * 119.87683 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.13118 * 180.28371 * 11 10 9 35 35 H 0.97003 * 120.00156 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12877 * 179.97438 * 21 12 11 37 37 H 1.08000 * 119.88142 * 180.02562 * 22 21 12 38 38 H 1.07995 * 126.58892 * 180.20744 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6904 0.0051 5 6 3.5460 -0.6504 0.0000 6 6 4.7891 -1.5024 0.0007 7 7 5.2615 -1.6805 -1.3789 8 6 6.4743 -2.5084 -1.4172 9 6 6.9278 -2.6692 -2.8454 10 6 6.4610 -3.7345 -3.5996 11 6 6.8639 -3.8880 -4.9065 12 6 7.7626 -2.9651 -5.4728 13 6 8.1889 -3.1164 -6.8125 14 1 9.1289 -2.6909 -7.1314 15 6 7.3927 -3.8175 -7.7252 16 7 6.1286 -4.0290 -7.4629 17 14 8.1350 -4.4514 -9.3178 18 1 9.2403 -5.3936 -9.0083 19 1 7.0908 -5.1556 -10.1048 20 1 8.6639 -3.3096 -10.1064 21 6 8.2344 -1.8908 -4.6960 22 6 7.8129 -1.7534 -3.3933 23 6 2.2772 -1.1017 0.0000 24 1 -0.3634 0.0000 1.0277 25 1 -0.3635 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.9333 2.1145 -0.0004 28 1 4.5621 -2.4758 0.4355 29 1 5.5645 -1.0132 0.5900 30 1 4.5372 -2.0735 -1.9611 31 1 7.2617 -2.0265 -0.8376 32 1 6.2586 -3.4887 -0.9923 33 1 5.7753 -4.4445 -3.1612 34 1 6.4955 -4.7161 -5.4937 35 1 5.5768 -4.5152 -8.0954 36 1 8.9248 -1.1769 -5.1205 37 1 8.1732 -0.9294 -2.7952 38 1 1.9613 -2.1344 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842719946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:51 Heat of formation + Delta-G solvation = 79.250783 kcal Electronic energy + Delta-G solvation = -19138.443470 eV Core-core repulsion = 16174.321981 eV Total energy + Delta-G solvation = -2964.121489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02659 -37.70667 -35.75421 -34.09379 -33.37005 -30.78476 -29.38241 -29.11520 -27.66925 -26.27798 -24.35984 -22.59436 -21.25601 -20.90604 -20.16750 -19.67967 -17.22069 -17.15299 -15.80697 -15.51093 -15.04247 -14.70611 -14.26942 -14.13952 -13.90459 -13.75872 -13.24188 -12.99712 -12.92499 -12.79781 -12.32967 -11.85808 -11.70116 -11.52751 -11.38348 -10.99549 -10.88823 -10.48305 -10.28345 -9.85920 -9.59824 -9.48186 -9.31211 -9.07453 -8.44697 -7.85043 -7.36292 -7.20732 -6.70308 -4.28197 2.00381 2.70939 2.80934 3.08989 3.11304 3.14070 3.17063 3.29941 3.97225 4.44360 4.56382 4.63389 4.79875 4.80412 5.04950 5.06540 5.25744 5.44510 5.77246 5.79806 5.92948 5.99655 6.08521 6.20268 6.38221 6.46753 6.53478 6.72679 7.02531 7.13689 7.13976 7.36336 7.46209 7.56120 7.69736 7.89061 7.98865 8.12613 8.16125 8.23801 8.38424 8.71174 8.96571 9.05741 10.24220 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.003268 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.519226 B = 8565.310483 C = 9099.170604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.467 5.467 3 C 0.176 3.824 4 N -0.474 5.474 5 C 0.017 3.983 6 C 0.141 3.859 7 N -0.676 5.676 8 C 0.125 3.875 9 C -0.211 4.211 10 C -0.096 4.096 11 C -0.167 4.167 12 C 0.112 3.888 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.228 4.228 22 C -0.068 4.068 23 C -0.057 4.057 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.203 0.797 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.339 0.661 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.279 0.721 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 3.244 12.383 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.151 5.151 3 C -0.107 4.107 4 N -0.192 5.192 5 C -0.113 4.113 6 C 0.011 3.989 7 N -0.308 5.308 8 C -0.003 4.003 9 C -0.213 4.213 10 C -0.115 4.115 11 C -0.186 4.186 12 C 0.109 3.891 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.141 4.141 16 N -0.420 5.420 17 Si 0.732 3.268 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.248 4.248 22 C -0.086 4.086 23 C -0.190 4.190 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.219 0.781 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.883 4.249 12.288 16.955 hybrid contribution -1.121 -1.584 -0.698 2.062 sum -12.004 2.665 11.590 16.897 Atomic orbital electron populations 1.22007 0.76873 1.04687 1.03277 1.45380 1.07464 1.07110 1.55129 1.25012 0.85574 0.93530 1.06536 1.70187 1.18973 1.11730 1.18294 1.20613 0.93528 0.90703 1.06461 1.20102 0.92169 0.94846 0.91804 1.60588 1.07953 1.54338 1.07904 1.20568 0.91263 0.93105 0.95317 1.18912 1.06699 1.00649 0.95029 1.20517 0.99210 0.96891 0.94855 1.21257 1.03001 1.00925 0.93437 1.17615 0.89805 0.89119 0.92533 1.19562 1.05419 1.30326 0.94076 0.90563 1.25898 0.94120 0.93940 1.00170 1.69833 1.05314 1.30719 1.36102 0.86394 0.79709 0.79807 0.80929 1.18875 1.20419 1.19041 1.20983 1.08041 1.00433 0.95303 1.20357 0.96865 0.96575 0.94840 1.22474 0.90986 0.92529 1.13030 0.90756 0.89497 0.89743 0.78073 0.94793 0.90204 0.84270 0.91930 0.96380 0.89970 0.86606 0.90969 0.89133 0.89371 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.18 59.85 0.67 1.06 16 2 N -0.47 -4.78 3.15 -125.99 -0.40 -5.17 16 3 C 0.18 2.08 12.56 -90.37 -1.14 0.95 16 4 N -0.47 -7.54 11.25 -10.87 -0.12 -7.66 16 5 C 0.02 0.25 6.60 -82.85 -0.55 -0.30 16 6 C 0.14 2.11 6.22 -4.97 -0.03 2.08 16 7 N -0.68 -12.07 6.48 -116.34 -0.75 -12.82 16 8 C 0.13 2.31 5.80 -4.97 -0.03 2.28 16 9 C -0.21 -4.75 5.41 -104.33 -0.56 -5.31 16 10 C -0.10 -2.27 9.67 -39.66 -0.38 -2.65 16 11 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 12 C 0.11 3.07 5.57 -106.83 -0.60 2.48 16 13 C -0.46 -12.65 9.05 -37.74 -0.34 -12.99 16 14 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 15 C 0.08 1.95 5.14 -17.34 -0.09 1.87 16 16 N -0.79 -20.94 10.95 55.55 0.61 -20.33 16 17 Si 0.91 19.02 29.59 -169.99 -5.03 13.99 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.23 -5.86 9.80 -38.87 -0.38 -6.24 16 22 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 23 C -0.06 -0.69 11.49 -16.57 -0.19 -0.88 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.20 1.58 8.06 -52.48 -0.42 1.15 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.34 6.16 8.71 -39.29 -0.34 5.82 16 31 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 35 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 36 H 0.09 2.21 8.06 -52.48 -0.42 1.78 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -31.88 327.86 -10.38 -42.26 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.28 Total: 9.21 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -4.34 Total: -24.40 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.66 Total: -45.99 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.88 -10.38 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842719946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.511 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds