Wall clock time and date at job start Mon Mar 30 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35048 * 126.39491 * 2 1 4 4 N 1.30500 * 108.69827 * 179.76369 * 3 2 1 5 5 C 1.34129 * 109.25353 * 0.38501 * 4 3 2 6 6 C 1.50704 * 125.98459 * 179.87746 * 5 4 3 7 7 N 1.46902 * 109.47233 * 274.68979 * 6 5 4 8 8 C 1.46900 * 110.99670 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46845 * 179.97438 * 8 7 6 10 10 C 1.38628 * 119.75010 * 269.72679 * 9 8 7 11 11 C 1.37618 * 120.24847 * 179.72116 * 10 9 8 12 12 C 1.40716 * 119.74303 * 0.57171 * 11 10 9 13 13 C 1.41393 * 120.24510 * 179.68073 * 12 11 10 14 14 H 1.08000 * 120.00302 * 204.40926 * 13 12 11 15 15 C 1.39945 * 120.00231 * 24.41065 * 13 12 11 16 16 N 1.30823 * 119.99688 * 17.84190 * 15 13 12 17 17 Si 1.86798 * 120.00141 * 197.84823 * 15 13 12 18 18 H 1.48499 * 109.47373 * 59.99602 * 17 15 13 19 19 H 1.48509 * 109.47128 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46996 * 299.99312 * 17 15 13 21 21 C 1.40717 * 119.51170 * 359.70573 * 12 11 10 22 22 C 1.37613 * 119.74644 * 359.97438 * 21 12 11 23 23 C 1.34667 * 108.02165 * 359.61717 * 5 4 3 24 24 H 1.09005 * 109.47488 * 269.99737 * 1 2 3 25 25 H 1.09001 * 109.47761 * 29.99666 * 1 2 3 26 26 H 1.09005 * 109.47416 * 149.99999 * 1 2 3 27 27 H 1.08004 * 125.65026 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46746 * 154.68943 * 6 5 4 29 29 H 1.08995 * 109.47233 * 34.69266 * 6 5 4 30 30 H 1.00900 * 110.99634 * 303.95378 * 7 6 5 31 31 H 1.08996 * 109.47157 * 299.99721 * 8 7 6 32 32 H 1.08995 * 109.47075 * 60.00108 * 8 7 6 33 33 H 1.08002 * 119.87683 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.13118 * 180.28371 * 11 10 9 35 35 H 0.97003 * 120.00156 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12877 * 179.97438 * 21 12 11 37 37 H 1.08000 * 119.88142 * 180.02562 * 22 21 12 38 38 H 1.07995 * 126.58892 * 180.20744 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6904 0.0051 5 6 3.5460 -0.6504 0.0000 6 6 4.7891 -1.5024 0.0007 7 7 5.2615 -1.6805 -1.3789 8 6 6.4743 -2.5084 -1.4172 9 6 6.9278 -2.6692 -2.8454 10 6 6.4610 -3.7345 -3.5996 11 6 6.8639 -3.8880 -4.9065 12 6 7.7626 -2.9651 -5.4728 13 6 8.1889 -3.1164 -6.8125 14 1 9.1289 -2.6909 -7.1314 15 6 7.3927 -3.8175 -7.7252 16 7 6.1286 -4.0290 -7.4629 17 14 8.1350 -4.4514 -9.3178 18 1 9.2403 -5.3936 -9.0083 19 1 7.0908 -5.1556 -10.1048 20 1 8.6639 -3.3096 -10.1064 21 6 8.2344 -1.8908 -4.6960 22 6 7.8129 -1.7534 -3.3933 23 6 2.2772 -1.1017 0.0000 24 1 -0.3634 0.0000 1.0277 25 1 -0.3635 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.9333 2.1145 -0.0004 28 1 4.5621 -2.4758 0.4355 29 1 5.5645 -1.0132 0.5900 30 1 4.5372 -2.0735 -1.9611 31 1 7.2617 -2.0265 -0.8376 32 1 6.2586 -3.4887 -0.9923 33 1 5.7753 -4.4445 -3.1612 34 1 6.4955 -4.7161 -5.4937 35 1 5.5768 -4.5152 -8.0954 36 1 8.9248 -1.1769 -5.1205 37 1 8.1732 -0.9294 -2.7952 38 1 1.9613 -2.1344 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842719946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:50 Heat of formation + Delta-G solvation = 60.713962 kcal Electronic energy + Delta-G solvation = -19139.247286 eV Core-core repulsion = 16174.321981 eV Total energy + Delta-G solvation = -2964.925305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.90045 -39.55787 -37.16565 -35.52923 -34.66012 -32.35011 -31.13943 -30.59714 -28.70185 -27.57483 -25.74229 -24.13531 -22.85657 -22.08146 -21.64794 -21.01411 -19.19375 -17.98913 -17.21765 -16.60586 -16.53443 -16.05269 -15.63907 -15.45267 -15.31403 -15.06320 -14.70278 -14.33214 -13.95177 -13.76798 -13.63200 -13.41594 -13.27918 -12.98598 -12.92369 -12.64537 -12.61674 -12.28725 -12.02169 -11.38073 -11.23726 -10.99493 -10.81284 -10.43434 -9.48938 -9.31189 -9.16662 -9.08712 -8.61709 -6.31057 0.96038 1.15334 1.19077 1.38074 1.49358 1.54448 2.03085 2.16782 2.22087 2.73227 3.58303 3.71736 3.88132 4.00002 4.11757 4.29553 4.35002 4.41183 4.47633 4.49440 4.64021 4.70456 4.74078 4.74796 4.86472 4.98681 5.07014 5.18357 5.35394 5.40798 5.50910 5.74076 5.78895 5.98740 6.12555 6.24427 6.30803 6.36650 6.42789 6.56491 6.72960 6.96704 7.07136 7.24621 8.35210 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.003268 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.519226 B = 8565.310483 C = 9099.170604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.463 5.463 3 C 0.174 3.826 4 N -0.529 5.529 5 C -0.023 4.023 6 C 0.147 3.853 7 N -0.690 5.690 8 C 0.132 3.868 9 C -0.199 4.199 10 C -0.096 4.096 11 C -0.189 4.189 12 C 0.079 3.921 13 C -0.505 4.505 14 H 0.072 0.928 15 C 0.035 3.965 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.261 1.261 21 C -0.247 4.247 22 C -0.075 4.075 23 C -0.049 4.049 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.234 0.766 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.336 0.664 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.288 0.712 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.239 3.008 13.214 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.145 5.145 3 C -0.109 4.109 4 N -0.248 5.248 5 C -0.152 4.152 6 C 0.018 3.982 7 N -0.322 5.322 8 C 0.005 3.995 9 C -0.201 4.201 10 C -0.115 4.115 11 C -0.209 4.209 12 C 0.076 3.924 13 C -0.534 4.534 14 H 0.091 0.909 15 C -0.180 4.180 16 N -0.451 5.451 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.185 1.185 21 C -0.266 4.266 22 C -0.093 4.093 23 C -0.184 4.184 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.251 0.749 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.609 4.024 13.146 18.654 hybrid contribution -0.713 -1.426 -0.792 1.780 sum -13.322 2.597 12.353 18.353 Atomic orbital electron populations 1.22361 0.73815 1.06211 1.04973 1.45660 1.09247 1.06110 1.53476 1.25604 0.84956 0.95170 1.05173 1.70094 1.21570 1.12642 1.20481 1.20711 0.94508 0.90783 1.09192 1.20042 0.92309 0.95995 0.89842 1.60487 1.07693 1.54116 1.09910 1.20478 0.92015 0.94564 0.92485 1.19351 1.04847 0.99048 0.96848 1.20787 0.99099 0.97656 0.93945 1.21253 1.04040 1.00885 0.94720 1.17967 0.90921 0.90117 0.93351 1.19808 1.06047 1.32639 0.94930 0.90936 1.26757 0.94229 0.93373 1.03600 1.69881 1.06447 1.31117 1.37696 0.85252 0.78974 0.79178 0.76261 1.18492 1.18988 1.18516 1.21167 1.08656 1.00425 0.96378 1.20647 0.96945 0.97416 0.94331 1.22818 0.90420 0.93988 1.11166 0.88928 0.87618 0.88698 0.74942 0.92506 0.91208 0.84647 0.91145 0.94386 0.87417 0.88101 0.90181 0.88985 0.87477 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.18 127.77 1.43 1.91 16 2 N -0.46 -8.28 3.15 -552.53 -1.74 -10.02 16 3 C 0.17 3.81 12.56 180.26 2.26 6.07 16 4 N -0.53 -16.47 11.25 -188.31 -2.12 -18.59 16 5 C -0.02 -0.66 6.60 41.39 0.27 -0.39 16 6 C 0.15 4.22 6.22 85.56 0.53 4.75 16 7 N -0.69 -23.73 6.48 -521.98 -3.38 -27.11 16 8 C 0.13 4.65 5.80 85.56 0.50 5.14 16 9 C -0.20 -8.79 5.41 -19.67 -0.11 -8.90 16 10 C -0.10 -4.52 9.67 22.22 0.21 -4.31 16 11 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 12 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 13 C -0.50 -28.52 9.05 23.46 0.21 -28.31 16 14 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 15 C 0.04 1.83 5.14 85.26 0.44 2.27 16 16 N -0.83 -44.43 10.95 21.83 0.24 -44.19 16 17 Si 0.98 39.35 29.59 68.60 2.03 41.38 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 21 C -0.25 -13.01 9.80 22.73 0.22 -12.79 16 22 C -0.07 -3.53 9.67 22.22 0.21 -3.32 16 23 C -0.05 -1.07 11.49 83.09 0.95 -0.12 16 24 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 25 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.23 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.34 11.79 8.71 -89.69 -0.78 11.00 16 31 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 32 H 0.04 1.19 8.08 -2.39 -0.02 1.18 16 33 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 35 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 36 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -71.27 327.86 2.53 -68.74 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.28 Total: 33.52 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 7.23 Total: -43.74 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -7.00 Total: -99.91 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -71.27 2.53 -68.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842719946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.453 kcal (2) G-P(sol) polarization free energy of solvation -71.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds