Wall clock time and date at job start Mon Mar 30 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.62704 * 2 1 4 4 C 1.53002 * 109.47265 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47566 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00340 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99870 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99943 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46677 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46598 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47003 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99567 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00047 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00003 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00076 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47317 * 89.99864 * 15 13 11 17 17 H 1.48504 * 109.47083 * 210.00027 * 15 13 11 18 18 H 1.48500 * 109.46947 * 329.99819 * 15 13 11 19 19 O 1.43372 * 109.63127 * 239.76210 * 2 1 3 20 20 C 1.44194 * 107.28623 * 240.78720 * 19 2 1 21 21 C 1.54917 * 103.07986 * 21.43649 * 20 19 2 22 22 O 1.43747 * 109.63642 * 120.39490 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.30456 * 1 2 3 24 24 H 1.09001 * 109.46832 * 180.30647 * 1 2 3 25 25 H 1.09004 * 109.47261 * 60.30628 * 1 2 3 26 26 H 1.08996 * 109.47445 * 299.99932 * 3 2 1 27 27 H 1.08995 * 109.47037 * 60.00216 * 3 2 1 28 28 H 1.09000 * 109.47443 * 300.00800 * 4 3 2 29 29 H 1.09005 * 109.46852 * 60.00171 * 4 3 2 30 30 H 0.96998 * 119.99390 * 0.02562 * 5 4 3 31 31 H 1.08991 * 109.47086 * 300.00118 * 8 6 5 32 32 H 1.08995 * 109.47061 * 60.00297 * 8 6 5 33 33 H 1.09004 * 109.47284 * 300.00119 * 9 8 6 34 34 H 1.08995 * 109.47267 * 60.00259 * 9 8 6 35 35 H 1.08996 * 109.47269 * 299.99590 * 10 9 8 36 36 H 1.08995 * 109.47388 * 59.99981 * 10 9 8 37 37 H 0.97002 * 119.99949 * 180.02562 * 14 13 11 38 38 H 1.09004 * 110.69727 * 263.03594 * 20 19 2 39 39 H 1.09001 * 110.84329 * 139.90609 * 20 19 2 40 40 H 1.08991 * 110.98199 * 206.33156 * 21 20 19 41 41 H 1.08999 * 110.97420 * 82.53830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5739 1.4370 0.0006 5 7 4.0661 2.8168 0.0013 6 6 5.3917 3.0595 0.0014 7 8 6.1774 2.1355 0.0005 8 6 5.8979 4.4790 0.0014 9 6 7.4279 4.4747 0.0009 10 6 7.9418 5.9159 0.0016 11 6 9.4489 5.9118 0.0017 12 1 9.9863 4.9750 0.0009 13 6 10.1415 7.1039 0.0018 14 7 11.4566 7.1004 0.0014 15 14 9.2119 8.7242 0.0025 16 1 8.9660 9.1533 1.4026 17 1 10.0171 9.7571 -0.6976 18 1 7.9137 8.5503 -0.6973 19 8 2.0117 -0.6800 -1.1667 20 6 2.7885 -1.8078 -0.7151 21 6 2.2653 -2.0401 0.7244 22 8 2.0130 -0.6850 1.1678 23 1 -0.3633 0.5186 0.8872 24 1 -0.3633 -1.0277 0.0055 25 1 -0.3634 0.5091 -0.8927 26 1 1.6820 1.9559 -0.8899 27 1 1.6820 1.9559 0.8900 28 1 3.9355 0.9222 0.8908 29 1 3.9362 0.9220 -0.8892 30 1 3.4377 3.5558 0.0016 31 1 5.5361 4.9938 -0.8885 32 1 5.5360 4.9938 0.8914 33 1 7.7902 3.9597 0.8907 34 1 7.7895 3.9601 -0.8893 35 1 7.5797 6.4312 -0.8879 36 1 7.5802 6.4302 0.8920 37 1 11.9439 7.9391 0.0018 38 1 3.8509 -1.5642 -0.7042 39 1 2.6017 -2.6821 -1.3387 40 1 3.0245 -2.5181 1.3432 41 1 1.3458 -2.6253 0.7157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846957118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:53 Heat of formation + Delta-G solvation = -147.556742 kcal Electronic energy + Delta-G solvation = -20670.407009 eV Core-core repulsion = 17356.848737 eV Total energy + Delta-G solvation = -3313.558272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05700 -39.39665 -35.52285 -35.37713 -34.22195 -33.06034 -32.03433 -29.83082 -28.90285 -28.06529 -24.36393 -23.64466 -22.81469 -21.41516 -20.41280 -19.75104 -17.77819 -17.10690 -16.70034 -16.38975 -16.29893 -15.70102 -15.36130 -14.86887 -14.56456 -14.16455 -14.03306 -13.65322 -13.31404 -13.25131 -13.08337 -12.67775 -12.62010 -12.54181 -12.05840 -11.89385 -11.75178 -11.63054 -11.41176 -10.93691 -10.74886 -10.56655 -10.12565 -9.95585 -9.79402 -9.65902 -9.35633 -9.09178 -8.98401 -8.48042 -5.97729 -3.95281 2.93613 2.97917 3.21615 3.33991 3.40904 3.44148 3.56034 4.16185 4.32497 4.38028 4.49927 4.54519 4.75847 4.83514 4.94319 4.99069 5.16364 5.19547 5.19671 5.27799 5.35648 5.45805 5.50080 5.61279 5.63501 5.64606 5.76386 5.88150 6.16636 6.48520 6.61269 6.68975 6.74176 6.96900 7.42170 7.50100 7.61189 7.86155 8.46745 8.62787 9.09229 9.64428 11.16041 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.002746 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.041039 B =10195.971329 C =10567.953185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.258 3.742 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.741 5.741 6 C 0.512 3.488 7 O -0.536 6.536 8 C -0.141 4.141 9 C -0.087 4.087 10 C -0.015 4.015 11 C -0.518 4.518 12 H 0.072 0.928 13 C 0.064 3.936 14 N -0.905 5.905 15 Si 0.882 3.118 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 O -0.376 6.376 20 C 0.018 3.982 21 C 0.016 3.984 22 O -0.368 6.368 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.589 -15.798 0.067 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.181 3.819 3 C -0.172 4.172 4 C -0.001 4.001 5 N -0.394 5.394 6 C 0.299 3.701 7 O -0.412 6.412 8 C -0.181 4.181 9 C -0.126 4.126 10 C -0.052 4.052 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.545 5.545 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.190 1.190 19 O -0.297 6.297 20 C -0.058 4.058 21 C -0.061 4.061 22 O -0.289 6.289 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.857 -16.205 0.064 30.516 hybrid contribution -0.731 1.071 0.035 1.297 sum -26.589 -15.134 0.099 30.594 Atomic orbital electron populations 1.22350 0.93381 1.03401 1.03553 1.23279 0.92882 0.90640 0.75142 1.22134 0.96211 0.94771 1.04092 1.21164 0.92264 0.83912 1.02724 1.46102 1.07652 1.08211 1.77450 1.21163 0.81399 0.92633 0.74868 1.90686 1.55407 1.46609 1.48457 1.21865 1.00653 0.91945 1.03656 1.21263 0.89276 0.99488 1.02526 1.19611 0.97277 0.92230 0.96085 1.21178 0.89557 0.94554 1.50314 0.90940 1.25056 0.94747 0.99162 0.94735 1.69927 1.06222 1.26847 1.51455 0.86751 0.80298 0.83643 0.78396 1.20364 1.21477 1.19033 1.88912 1.69459 1.42079 1.29258 1.24239 0.97100 0.89630 0.94854 1.24388 1.01463 0.85038 0.95174 1.89293 1.85938 1.21859 1.31783 0.90440 0.91693 0.90526 0.89240 0.89439 0.91210 0.91399 0.76833 0.89393 0.89396 0.92121 0.92095 0.96664 0.97098 0.92821 0.90082 0.88173 0.87149 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.20 37.16 0.34 -0.77 16 2 C 0.26 2.24 1.06 -26.73 -0.03 2.21 16 3 C -0.13 -1.13 4.83 -26.73 -0.13 -1.26 16 4 C 0.12 1.43 5.38 -4.04 -0.02 1.41 16 5 N -0.74 -8.91 5.56 -60.29 -0.33 -9.25 16 6 C 0.51 8.34 7.83 -10.99 -0.09 8.25 16 7 O -0.54 -11.05 15.98 5.56 0.09 -10.96 16 8 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 9 C -0.09 -1.87 4.44 -26.73 -0.12 -1.99 16 10 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 11 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 12 H 0.07 2.34 7.99 -52.48 -0.42 1.92 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.91 -28.71 13.96 55.43 0.77 -27.93 16 15 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 19 O -0.38 -3.62 10.18 -59.04 -0.60 -4.22 16 20 C 0.02 0.13 8.07 38.17 0.31 0.44 16 21 C 0.02 0.10 7.92 38.17 0.30 0.41 16 22 O -0.37 -3.50 10.33 -59.04 -0.61 -4.11 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 29 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 30 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 35 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -36.03 338.48 -7.37 -43.40 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.99 Total: -1.30 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.13 Total: -8.08 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.44 Total: -37.18 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.12 Total: -19.29 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.03 -7.37 -43.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846957118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.154 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds