Wall clock time and date at job start Mon Mar 30 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.62704 * 2 1 4 4 C 1.53002 * 109.47265 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47566 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00340 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99870 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99943 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46677 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46598 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47003 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99567 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00047 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00003 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00076 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47317 * 89.99864 * 15 13 11 17 17 H 1.48504 * 109.47083 * 210.00027 * 15 13 11 18 18 H 1.48500 * 109.46947 * 329.99819 * 15 13 11 19 19 O 1.43372 * 109.63127 * 239.76210 * 2 1 3 20 20 C 1.44194 * 107.28623 * 240.78720 * 19 2 1 21 21 C 1.54917 * 103.07986 * 21.43649 * 20 19 2 22 22 O 1.43747 * 109.63642 * 120.39490 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.30456 * 1 2 3 24 24 H 1.09001 * 109.46832 * 180.30647 * 1 2 3 25 25 H 1.09004 * 109.47261 * 60.30628 * 1 2 3 26 26 H 1.08996 * 109.47445 * 299.99932 * 3 2 1 27 27 H 1.08995 * 109.47037 * 60.00216 * 3 2 1 28 28 H 1.09000 * 109.47443 * 300.00800 * 4 3 2 29 29 H 1.09005 * 109.46852 * 60.00171 * 4 3 2 30 30 H 0.96998 * 119.99390 * 0.02562 * 5 4 3 31 31 H 1.08991 * 109.47086 * 300.00118 * 8 6 5 32 32 H 1.08995 * 109.47061 * 60.00297 * 8 6 5 33 33 H 1.09004 * 109.47284 * 300.00119 * 9 8 6 34 34 H 1.08995 * 109.47267 * 60.00259 * 9 8 6 35 35 H 1.08996 * 109.47269 * 299.99590 * 10 9 8 36 36 H 1.08995 * 109.47388 * 59.99981 * 10 9 8 37 37 H 0.97002 * 119.99949 * 180.02562 * 14 13 11 38 38 H 1.09004 * 110.69727 * 263.03594 * 20 19 2 39 39 H 1.09001 * 110.84329 * 139.90609 * 20 19 2 40 40 H 1.08991 * 110.98199 * 206.33156 * 21 20 19 41 41 H 1.08999 * 110.97420 * 82.53830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5739 1.4370 0.0006 5 7 4.0661 2.8168 0.0013 6 6 5.3917 3.0595 0.0014 7 8 6.1774 2.1355 0.0005 8 6 5.8979 4.4790 0.0014 9 6 7.4279 4.4747 0.0009 10 6 7.9418 5.9159 0.0016 11 6 9.4489 5.9118 0.0017 12 1 9.9863 4.9750 0.0009 13 6 10.1415 7.1039 0.0018 14 7 11.4566 7.1004 0.0014 15 14 9.2119 8.7242 0.0025 16 1 8.9660 9.1533 1.4026 17 1 10.0171 9.7571 -0.6976 18 1 7.9137 8.5503 -0.6973 19 8 2.0117 -0.6800 -1.1667 20 6 2.7885 -1.8078 -0.7151 21 6 2.2653 -2.0401 0.7244 22 8 2.0130 -0.6850 1.1678 23 1 -0.3633 0.5186 0.8872 24 1 -0.3633 -1.0277 0.0055 25 1 -0.3634 0.5091 -0.8927 26 1 1.6820 1.9559 -0.8899 27 1 1.6820 1.9559 0.8900 28 1 3.9355 0.9222 0.8908 29 1 3.9362 0.9220 -0.8892 30 1 3.4377 3.5558 0.0016 31 1 5.5361 4.9938 -0.8885 32 1 5.5360 4.9938 0.8914 33 1 7.7902 3.9597 0.8907 34 1 7.7895 3.9601 -0.8893 35 1 7.5797 6.4312 -0.8879 36 1 7.5802 6.4302 0.8920 37 1 11.9439 7.9391 0.0018 38 1 3.8509 -1.5642 -0.7042 39 1 2.6017 -2.6821 -1.3387 40 1 3.0245 -2.5181 1.3432 41 1 1.3458 -2.6253 0.7157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846957118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:52 Heat of formation + Delta-G solvation = -174.578014 kcal Electronic energy + Delta-G solvation = -20671.578739 eV Core-core repulsion = 17356.848737 eV Total energy + Delta-G solvation = -3314.730002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68688 -40.67226 -36.62203 -36.03999 -36.01408 -34.16785 -33.76450 -30.97579 -29.61075 -29.40058 -25.89836 -24.20281 -24.04498 -22.21831 -21.98072 -21.14876 -18.94366 -18.40758 -17.97831 -17.28191 -17.20025 -16.90613 -16.35024 -16.20012 -15.78655 -15.39699 -14.89239 -14.74992 -14.61628 -14.55204 -14.00430 -13.83736 -13.78784 -13.23542 -13.22086 -13.10992 -12.73140 -12.64649 -12.51697 -12.36432 -12.22163 -11.78368 -11.72515 -11.49056 -11.32309 -11.14305 -10.96415 -10.74384 -10.57381 -10.11524 -8.27133 -6.32915 1.39289 1.43085 1.55266 1.66086 2.17715 2.40041 2.42151 2.94649 3.07950 3.62677 3.65782 3.76692 3.92116 4.02772 4.10118 4.16779 4.23593 4.26939 4.35691 4.50004 4.54515 4.69489 4.73214 4.76946 4.86323 4.90294 4.94570 4.95735 4.97524 5.04405 5.05577 5.18771 5.41629 5.57625 5.61072 5.68839 6.09623 6.31459 6.57484 6.75851 7.29125 7.31670 8.90669 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.002746 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.041039 B =10195.971329 C =10567.953185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.249 3.751 3 C -0.128 4.128 4 C 0.128 3.872 5 N -0.717 5.717 6 C 0.509 3.491 7 O -0.591 6.591 8 C -0.130 4.130 9 C -0.082 4.082 10 C -0.009 4.009 11 C -0.541 4.541 12 H 0.018 0.982 13 C -0.005 4.005 14 N -0.958 5.958 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.235 1.235 19 O -0.394 6.394 20 C 0.013 3.987 21 C 0.014 3.986 22 O -0.391 6.391 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.419 0.581 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.064 0.936 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.483 -14.112 0.106 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.172 3.828 3 C -0.165 4.165 4 C 0.004 3.996 5 N -0.371 5.371 6 C 0.298 3.702 7 O -0.471 6.471 8 C -0.169 4.169 9 C -0.120 4.120 10 C -0.046 4.046 11 C -0.579 4.579 12 H 0.036 0.964 13 C -0.200 4.200 14 N -0.599 5.599 15 Si 0.785 3.215 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.158 1.158 19 O -0.316 6.316 20 C -0.063 4.063 21 C -0.062 4.062 22 O -0.312 6.312 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.257 0.743 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -29.821 -14.524 0.104 33.170 hybrid contribution 0.576 0.414 0.022 0.710 sum -29.245 -14.109 0.126 32.471 Atomic orbital electron populations 1.22325 0.91525 1.03949 1.04384 1.23518 0.94158 0.90399 0.74723 1.22155 0.93275 0.95436 1.05658 1.21103 0.94636 0.83075 1.00810 1.45872 1.06586 1.09320 1.75300 1.21261 0.82365 0.92233 0.74377 1.90679 1.57091 1.48060 1.51300 1.21724 0.96192 0.92330 1.06662 1.21052 0.93598 0.97186 1.00185 1.19548 0.93411 0.94259 0.97397 1.21574 0.92773 0.92832 1.50719 0.96357 1.26222 0.95748 1.04225 0.93833 1.70112 1.08632 1.28395 1.52729 0.85469 0.79670 0.76910 0.79407 1.18870 1.21230 1.15766 1.88885 1.69750 1.42843 1.30132 1.24352 0.96086 0.89870 0.96001 1.24564 1.02679 0.84289 0.94634 1.89261 1.86231 1.23202 1.32474 0.89499 0.91368 0.89728 0.87634 0.87785 0.93232 0.93372 0.74336 0.86305 0.86238 0.94646 0.94650 0.95017 0.95144 0.92499 0.91777 0.85963 0.86228 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.20 71.98 0.66 -1.09 16 2 C 0.25 3.93 1.06 30.59 0.03 3.96 16 3 C -0.13 -1.87 4.83 30.59 0.15 -1.73 16 4 C 0.13 2.88 5.38 86.38 0.46 3.34 16 5 N -0.72 -15.77 5.56 -463.05 -2.57 -18.34 16 6 C 0.51 16.07 7.83 87.66 0.69 16.76 16 7 O -0.59 -25.10 15.98 -3.04 -0.05 -25.15 16 8 C -0.13 -3.79 5.70 29.85 0.17 -3.62 16 9 C -0.08 -3.51 4.44 30.60 0.14 -3.37 16 10 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 11 C -0.54 -33.01 9.66 25.60 0.25 -32.77 16 12 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 13 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 14 N -0.96 -62.51 13.96 21.45 0.30 -62.21 16 15 Si 0.96 44.26 27.47 68.60 1.88 46.14 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.23 -9.57 6.54 99.48 0.65 -8.92 16 19 O -0.39 -7.26 10.18 -126.22 -1.28 -8.54 16 20 C 0.01 0.19 8.07 72.64 0.59 0.77 16 21 C 0.01 0.17 7.92 72.64 0.58 0.75 16 22 O -0.39 -7.04 10.33 -126.22 -1.30 -8.35 16 23 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.33 7.68 -2.39 -0.02 1.32 16 29 H 0.05 1.29 7.68 -2.38 -0.02 1.27 16 30 H 0.42 5.71 8.47 -92.71 -0.79 4.93 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 36 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 37 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -82.75 338.48 1.43 -81.32 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.16 Total: 12.23 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 4.29 Total: -17.11 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.27 Total: -80.55 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -2.64 Total: -42.04 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -82.75 1.43 -81.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846957118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.257 kcal (2) G-P(sol) polarization free energy of solvation -82.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds