Wall clock time and date at job start Mon Mar 30 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45192 * 109.47679 * 2 1 4 4 C 1.34223 * 117.00387 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00343 * 180.02562 * 4 3 2 7 7 F 1.39898 * 110.36823 * 313.20003 * 6 4 3 8 8 C 1.54243 * 110.56180 * 190.84174 * 6 4 3 9 9 N 1.48229 * 104.86606 * 217.71281 * 8 6 4 10 10 C 1.36937 * 127.75618 * 218.97180 * 9 8 6 11 11 H 1.08004 * 120.00315 * 164.18167 * 10 9 8 12 12 C 1.38814 * 119.99696 * 343.90219 * 10 9 8 13 13 N 1.31611 * 120.00029 * 351.31749 * 12 10 9 14 14 Si 1.86804 * 119.99798 * 171.31911 * 12 10 9 15 15 H 1.48498 * 109.47240 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47131 * 120.00007 * 14 12 10 17 17 H 1.48494 * 109.47108 * 239.99848 * 14 12 10 18 18 C 1.48377 * 104.49123 * 38.70791 * 9 8 6 19 19 C 1.53359 * 110.41766 * 75.56409 * 6 4 3 20 20 C 1.52788 * 115.64996 * 248.52446 * 19 6 4 21 21 C 1.53959 * 86.77387 * 142.59435 * 20 19 6 22 22 C 1.52775 * 115.68216 * 349.50731 * 19 6 4 23 23 H 1.09010 * 109.46800 * 300.00344 * 1 2 3 24 24 H 1.09003 * 109.46376 * 59.99516 * 1 2 3 25 25 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47162 * 239.99775 * 2 1 3 27 27 H 1.09011 * 109.46956 * 120.00253 * 2 1 3 28 28 H 1.09004 * 110.34390 * 98.83034 * 8 6 4 29 29 H 1.08997 * 110.26432 * 336.55363 * 8 6 4 30 30 H 0.97000 * 120.00316 * 179.97438 * 13 12 10 31 31 H 1.09000 * 110.45548 * 80.28828 * 18 9 8 32 32 H 1.09008 * 110.45598 * 202.85222 * 18 9 8 33 33 H 1.08995 * 113.66881 * 257.06953 * 20 19 6 34 34 H 1.09000 * 113.66162 * 28.12955 * 20 19 6 35 35 H 1.08996 * 113.58732 * 220.72367 * 21 20 19 36 36 H 1.09005 * 113.58078 * 89.91667 * 21 20 19 37 37 H 1.08996 * 113.66628 * 331.90599 * 22 19 6 38 38 H 1.08998 * 113.66719 * 102.87101 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9209 2.9372 0.0012 7 9 3.2778 3.7307 -0.9549 8 6 5.4388 2.8956 -0.2700 9 7 6.0094 3.9521 0.5992 10 6 7.0261 4.8211 0.3053 11 1 7.1785 5.6999 0.9145 12 6 7.8644 4.5697 -0.7721 13 7 7.7943 3.4182 -1.4057 14 14 9.0920 5.8656 -1.3227 15 1 8.9718 7.0628 -0.4525 16 1 10.4685 5.3172 -1.2237 17 1 8.8113 6.2470 -2.7301 18 6 5.2273 3.8609 1.8568 19 6 3.7939 3.5682 1.3932 20 6 2.8135 4.7348 1.5035 21 6 2.4460 4.1812 2.8923 22 6 2.9207 2.8059 2.3884 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8901 28 1 5.6427 3.1148 -1.3181 29 1 5.8441 1.9208 0.0010 30 1 8.3799 3.2426 -2.1588 31 1 5.6001 3.0473 2.4791 32 1 5.2667 4.8056 2.3993 33 1 3.2970 5.7111 1.5357 34 1 1.9961 4.6889 0.7839 35 1 1.3786 4.2214 3.1094 36 1 3.0580 4.5851 3.6988 37 1 2.1335 2.2168 1.9181 38 1 3.4898 2.2405 3.1263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852318726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:27 Heat of formation + Delta-G solvation = -80.797840 kcal Electronic energy + Delta-G solvation = -22554.067050 eV Core-core repulsion = 19119.943357 eV Total energy + Delta-G solvation = -3434.123694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.23531 -40.49189 -38.94584 -36.57409 -35.12025 -31.93565 -31.68535 -29.26903 -26.79910 -25.60693 -25.16473 -23.58498 -22.18755 -21.47355 -19.97701 -18.42504 -17.42452 -17.23748 -16.53219 -16.39418 -15.43839 -14.90784 -14.77649 -14.16287 -13.84031 -13.81782 -13.33921 -13.21081 -13.09050 -12.86283 -12.10257 -12.05732 -11.90356 -11.76689 -11.53746 -11.42654 -11.35124 -10.99898 -10.85897 -10.56108 -10.48615 -10.29346 -10.09359 -10.02302 -9.91646 -9.65562 -9.53329 -8.73755 -6.95748 -5.84471 -3.21170 2.38094 2.73326 3.37688 3.43104 3.45986 4.38413 4.58441 4.64785 4.81934 4.88049 4.88750 4.96598 5.05130 5.22586 5.27893 5.45294 5.48412 5.60381 5.66050 5.70937 5.79430 5.86790 5.92716 5.97209 6.01063 6.10211 6.31011 6.40496 6.52521 6.58466 6.67506 6.70639 7.15062 7.39680 7.63294 7.94346 8.08835 9.01348 9.65847 10.38196 11.29975 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.006448 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.168541 B = 4341.150728 C = 4956.151080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.463 3.537 5 O -0.484 6.484 6 C 0.116 3.884 7 F -0.185 7.185 8 C 0.150 3.850 9 N -0.587 5.587 10 C -0.231 4.231 11 H 0.082 0.918 12 C -0.002 4.002 13 N -0.913 5.913 14 Si 0.916 3.084 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.288 1.288 18 C 0.148 3.852 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.143 4.143 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.257 0.743 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -3.366 5.657 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.270 6.270 4 C 0.303 3.697 5 O -0.370 6.370 6 C 0.094 3.906 7 F -0.165 7.165 8 C 0.023 3.977 9 N -0.310 5.310 10 C -0.359 4.359 11 H 0.099 0.901 12 C -0.200 4.200 13 N -0.558 5.558 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.215 1.215 18 C 0.022 3.978 19 C -0.113 4.113 20 C -0.151 4.151 21 C -0.170 4.170 22 C -0.180 4.180 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.634 -3.611 5.469 15.127 hybrid contribution 0.575 0.317 -0.517 0.836 sum -13.060 -3.294 4.951 14.350 Atomic orbital electron populations 1.21790 0.92775 1.02664 1.03515 1.23021 0.95280 0.80973 1.02586 1.86621 1.24748 1.31808 1.83801 1.24120 0.80508 0.92803 0.72270 1.90662 1.60209 1.42184 1.43904 1.22153 0.97245 0.81994 0.89209 1.92854 1.83356 1.74848 1.65423 1.22129 0.81531 0.94009 0.99999 1.44859 1.38288 1.38846 1.09000 1.19032 1.04005 1.00456 1.12379 0.90066 1.24956 0.98394 0.96900 0.99725 1.69875 1.40920 1.21550 1.23471 0.86005 0.80533 0.80502 0.78437 1.20226 1.21574 1.21481 1.21414 0.86725 0.99233 0.90425 1.22919 0.98402 0.97792 0.92174 1.22661 0.98217 0.97490 0.96714 1.22797 1.00701 0.96210 0.97306 1.23126 0.99256 0.97083 0.98550 0.91542 0.91464 0.90475 0.91275 0.91292 0.87851 0.91977 0.93301 0.94811 0.92130 0.90691 0.89609 0.91584 0.90098 0.89135 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.35 -5.74 8.41 -39.24 -0.33 -6.07 16 4 C 0.46 9.04 5.73 36.01 0.21 9.24 16 5 O -0.48 -10.43 15.19 -18.75 -0.28 -10.71 16 6 C 0.12 2.44 1.66 -90.93 -0.15 2.29 16 7 F -0.18 -4.01 15.59 2.25 0.04 -3.97 16 8 C 0.15 3.82 5.10 -2.44 -0.01 3.80 16 9 N -0.59 -15.15 3.39 -169.25 -0.57 -15.72 16 10 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16 11 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 12 C 0.00 -0.06 5.40 -17.43 -0.09 -0.15 16 13 N -0.91 -27.05 10.88 55.49 0.60 -26.44 16 14 Si 0.92 21.91 29.56 -169.99 -5.03 16.88 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 C 0.15 3.09 6.47 -2.76 -0.02 3.08 16 19 C -0.11 -2.03 1.13 -154.31 -0.17 -2.21 16 20 C -0.11 -1.80 6.80 -26.34 -0.18 -1.98 16 21 C -0.13 -1.73 7.94 -25.74 -0.20 -1.93 16 22 C -0.14 -2.14 6.53 -26.34 -0.17 -2.31 16 23 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.07 0.83 8.13 -51.92 -0.42 0.41 16 28 H 0.10 2.93 6.54 -51.93 -0.34 2.60 16 29 H 0.06 1.69 6.79 -51.93 -0.35 1.33 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.06 1.18 7.90 -51.92 -0.41 0.77 16 33 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 34 H 0.09 1.35 7.51 -51.93 -0.39 0.96 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.34 5.56 -51.93 -0.29 1.05 16 38 H 0.07 1.02 8.04 -51.93 -0.42 0.61 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -31.14 309.51 -6.79 -37.94 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.54 Total: 0.20 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.34 Total: 3.24 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.03 Total: -42.16 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.62 Total: -16.79 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.14 -6.79 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852318726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.862 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds