Wall clock time and date at job start Mon Mar 30 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45192 * 109.47679 * 2 1 4 4 C 1.34223 * 117.00387 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00343 * 180.02562 * 4 3 2 7 7 F 1.39898 * 110.36823 * 313.20003 * 6 4 3 8 8 C 1.54243 * 110.56180 * 190.84174 * 6 4 3 9 9 N 1.48229 * 104.86606 * 217.71281 * 8 6 4 10 10 C 1.36937 * 127.75618 * 218.97180 * 9 8 6 11 11 H 1.08004 * 120.00315 * 164.18167 * 10 9 8 12 12 C 1.38814 * 119.99696 * 343.90219 * 10 9 8 13 13 N 1.31611 * 120.00029 * 351.31749 * 12 10 9 14 14 Si 1.86804 * 119.99798 * 171.31911 * 12 10 9 15 15 H 1.48498 * 109.47240 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47131 * 120.00007 * 14 12 10 17 17 H 1.48494 * 109.47108 * 239.99848 * 14 12 10 18 18 C 1.48377 * 104.49123 * 38.70791 * 9 8 6 19 19 C 1.53359 * 110.41766 * 75.56409 * 6 4 3 20 20 C 1.52788 * 115.64996 * 248.52446 * 19 6 4 21 21 C 1.53959 * 86.77387 * 142.59435 * 20 19 6 22 22 C 1.52775 * 115.68216 * 349.50731 * 19 6 4 23 23 H 1.09010 * 109.46800 * 300.00344 * 1 2 3 24 24 H 1.09003 * 109.46376 * 59.99516 * 1 2 3 25 25 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47162 * 239.99775 * 2 1 3 27 27 H 1.09011 * 109.46956 * 120.00253 * 2 1 3 28 28 H 1.09004 * 110.34390 * 98.83034 * 8 6 4 29 29 H 1.08997 * 110.26432 * 336.55363 * 8 6 4 30 30 H 0.97000 * 120.00316 * 179.97438 * 13 12 10 31 31 H 1.09000 * 110.45548 * 80.28828 * 18 9 8 32 32 H 1.09008 * 110.45598 * 202.85222 * 18 9 8 33 33 H 1.08995 * 113.66881 * 257.06953 * 20 19 6 34 34 H 1.09000 * 113.66162 * 28.12955 * 20 19 6 35 35 H 1.08996 * 113.58732 * 220.72367 * 21 20 19 36 36 H 1.09005 * 113.58078 * 89.91667 * 21 20 19 37 37 H 1.08996 * 113.66628 * 331.90599 * 22 19 6 38 38 H 1.08998 * 113.66719 * 102.87101 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9209 2.9372 0.0012 7 9 3.2778 3.7307 -0.9549 8 6 5.4388 2.8956 -0.2700 9 7 6.0094 3.9521 0.5992 10 6 7.0261 4.8211 0.3053 11 1 7.1785 5.6999 0.9145 12 6 7.8644 4.5697 -0.7721 13 7 7.7943 3.4182 -1.4057 14 14 9.0920 5.8656 -1.3227 15 1 8.9718 7.0628 -0.4525 16 1 10.4685 5.3172 -1.2237 17 1 8.8113 6.2470 -2.7301 18 6 5.2273 3.8609 1.8568 19 6 3.7939 3.5682 1.3932 20 6 2.8135 4.7348 1.5035 21 6 2.4460 4.1812 2.8923 22 6 2.9207 2.8059 2.3884 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8901 28 1 5.6427 3.1148 -1.3181 29 1 5.8441 1.9208 0.0010 30 1 8.3799 3.2426 -2.1588 31 1 5.6001 3.0473 2.4791 32 1 5.2667 4.8056 2.3993 33 1 3.2970 5.7111 1.5357 34 1 1.9961 4.6889 0.7839 35 1 1.3786 4.2214 3.1094 36 1 3.0580 4.5851 3.6988 37 1 2.1335 2.2168 1.9181 38 1 3.4898 2.2405 3.1263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852318726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:26 Heat of formation + Delta-G solvation = -98.775051 kcal Electronic energy + Delta-G solvation = -22554.846601 eV Core-core repulsion = 19119.943357 eV Total energy + Delta-G solvation = -3434.903244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.96785 -41.98688 -40.35751 -38.02665 -36.89286 -33.85616 -32.74021 -31.04114 -28.51717 -27.19967 -26.63964 -24.87079 -23.42687 -23.17544 -21.59067 -19.91433 -18.99301 -18.93234 -18.06519 -17.95562 -17.09455 -16.54789 -16.22310 -15.77802 -15.42671 -15.17834 -14.95581 -14.86467 -14.69372 -13.84120 -13.66108 -13.54271 -13.22648 -13.10820 -12.99494 -12.90349 -12.78011 -12.72217 -12.53695 -12.20908 -12.04941 -11.90376 -11.69748 -11.52204 -11.37330 -11.15216 -11.06551 -10.79472 -9.02586 -7.97329 -5.36922 0.81389 1.31791 1.46392 1.48089 1.58646 2.44418 3.02606 3.22226 3.23841 3.37520 3.56605 3.60586 3.88133 3.91668 3.98238 4.06001 4.09526 4.21273 4.32358 4.57470 4.74916 4.80060 4.80578 4.85017 4.92034 4.92768 5.03653 5.08658 5.10966 5.16712 5.24431 5.31660 5.37505 5.48810 5.51782 6.03065 6.45892 6.88174 7.57339 8.32370 9.17280 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.006448 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.168541 B = 4341.150728 C = 4956.151080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 O -0.345 6.345 4 C 0.472 3.528 5 O -0.512 6.512 6 C 0.114 3.886 7 F -0.190 7.190 8 C 0.158 3.842 9 N -0.610 5.610 10 C -0.241 4.241 11 H 0.093 0.907 12 C -0.062 4.062 13 N -0.951 5.951 14 Si 0.985 3.015 15 H -0.258 1.258 16 H -0.290 1.290 17 H -0.292 1.292 18 C 0.147 3.853 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.136 4.136 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.251 0.749 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.251 -2.641 7.408 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 O -0.262 6.262 4 C 0.313 3.687 5 O -0.400 6.400 6 C 0.093 3.907 7 F -0.170 7.170 8 C 0.030 3.970 9 N -0.334 5.334 10 C -0.369 4.369 11 H 0.110 0.890 12 C -0.256 4.256 13 N -0.599 5.599 14 Si 0.812 3.188 15 H -0.182 1.182 16 H -0.217 1.217 17 H -0.219 1.219 18 C 0.022 3.978 19 C -0.120 4.120 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.174 4.174 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.871 -2.874 7.256 17.686 hybrid contribution 1.198 0.010 -1.065 1.603 sum -14.672 -2.864 6.191 16.180 Atomic orbital electron populations 1.21828 0.89470 1.04645 1.03946 1.23486 0.97743 0.78843 1.02846 1.86595 1.22271 1.34393 1.82918 1.23638 0.81596 0.91602 0.71833 1.90654 1.61173 1.42745 1.45398 1.21893 0.94479 0.83550 0.90779 1.92832 1.83089 1.75147 1.65978 1.21697 0.84938 0.92635 0.97692 1.45116 1.38670 1.38449 1.11168 1.19486 1.04177 1.00976 1.12278 0.88959 1.25862 1.00700 0.98911 1.00112 1.70089 1.42040 1.23723 1.24013 0.84931 0.77716 0.78462 0.77706 1.18214 1.21714 1.21914 1.21580 0.87500 1.00007 0.88718 1.23034 0.97845 1.00278 0.90854 1.22717 0.97290 0.96166 0.98961 1.22745 1.02788 0.93494 0.95646 1.23149 0.98474 0.98307 0.97456 0.90606 0.91514 0.87674 0.91701 0.90552 0.91880 0.94906 0.93940 0.94926 0.90482 0.91186 0.89426 0.88630 0.88735 0.88638 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.04 1.02 6.19 71.98 0.45 1.47 16 3 O -0.35 -10.78 8.41 -51.35 -0.43 -11.22 16 4 C 0.47 18.52 5.73 71.24 0.41 18.93 16 5 O -0.51 -22.61 15.19 21.96 0.33 -22.27 16 6 C 0.11 4.90 1.66 -11.00 -0.02 4.88 16 7 F -0.19 -8.37 15.59 44.97 0.70 -7.67 16 8 C 0.16 8.42 5.10 86.47 0.44 8.86 16 9 N -0.61 -32.30 3.39 -689.38 -2.34 -34.63 16 10 C -0.24 -13.56 10.35 84.03 0.87 -12.69 16 11 H 0.09 4.85 7.84 -2.91 -0.02 4.83 16 12 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 13 N -0.95 -59.03 10.88 21.65 0.24 -58.80 16 14 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 C 0.15 6.06 6.47 86.18 0.56 6.62 16 19 C -0.12 -4.20 1.13 -52.06 -0.06 -4.26 16 20 C -0.11 -3.33 6.80 30.85 0.21 -3.12 16 21 C -0.11 -2.39 7.94 31.24 0.25 -2.14 16 22 C -0.14 -3.70 6.53 30.85 0.20 -3.50 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 27 H 0.08 1.69 8.13 -2.38 -0.02 1.67 16 28 H 0.06 3.83 6.54 -2.39 -0.02 3.81 16 29 H 0.03 1.91 6.79 -2.39 -0.02 1.90 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 31 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 32 H 0.08 2.88 7.90 -2.38 -0.02 2.86 16 33 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 34 H 0.09 2.54 7.51 -2.39 -0.02 2.53 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.10 2.52 5.56 -2.39 -0.01 2.51 16 38 H 0.08 2.01 8.04 -2.39 -0.02 1.99 16 Total: -1.00 -70.56 309.51 6.08 -64.47 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.05 Total: 11.67 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.50 Total: 10.54 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -2.10 Total: -93.43 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.10 Total: -33.49 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.70 Total: -7.67 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -70.56 6.08 -64.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852318726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.303 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds