Wall clock time and date at job start Mon Mar 30 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50696 * 109.50035 * 230.47686 * 3 2 1 5 5 C 1.38229 * 119.62165 * 284.81079 * 4 3 2 6 6 C 1.38630 * 119.15967 * 179.75585 * 5 4 3 7 7 C 1.38670 * 118.42183 * 0.50701 * 6 5 4 8 8 C 1.38185 * 119.16258 * 359.73186 * 7 6 5 9 9 N 1.31859 * 119.61639 * 105.08017 * 4 3 2 10 10 C 1.53114 * 109.53454 * 110.38330 * 3 2 1 11 11 C 1.53123 * 109.16198 * 297.68970 * 10 3 2 12 12 C 1.53035 * 109.27774 * 302.35270 * 11 10 3 13 13 N 1.46846 * 109.52744 * 59.17321 * 12 11 10 14 14 C 1.46904 * 110.99942 * 174.16069 * 13 12 11 15 15 C 1.50699 * 109.46940 * 66.04866 * 14 13 12 16 16 H 1.08000 * 120.00210 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99534 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00050 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47181 * 89.99991 * 19 17 15 21 21 H 1.48498 * 109.47094 * 209.99913 * 19 17 15 22 22 H 1.48500 * 109.46939 * 329.99825 * 19 17 15 23 23 C 1.46844 * 111.19783 * 298.26158 * 13 12 11 24 24 H 1.07999 * 120.41688 * 359.97438 * 5 4 3 25 25 H 1.08003 * 120.78501 * 180.21179 * 6 5 4 26 26 H 1.07999 * 120.41929 * 179.75549 * 7 6 5 27 27 H 1.08004 * 119.61509 * 180.02562 * 8 7 6 28 28 H 1.09000 * 109.52528 * 57.59610 * 10 3 2 29 29 H 1.09001 * 109.52673 * 177.72312 * 10 3 2 30 30 H 1.08995 * 109.51026 * 182.40543 * 11 10 3 31 31 H 1.09011 * 109.49940 * 62.28508 * 11 10 3 32 32 H 1.09008 * 109.45841 * 299.15478 * 12 11 10 33 33 H 1.09003 * 109.46290 * 179.19461 * 12 11 10 34 34 H 1.08999 * 109.47060 * 186.04709 * 14 13 12 35 35 H 1.08999 * 109.47352 * 306.05023 * 14 13 12 36 36 H 0.97008 * 119.99138 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46271 * 181.75698 * 23 13 12 38 38 H 1.08998 * 109.46026 * 301.72258 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1107 0.9049 1.0957 5 6 3.0486 2.2761 0.9323 6 6 3.5090 3.0990 1.9486 7 6 4.0267 2.5093 3.0919 8 6 4.0611 1.1308 3.1820 9 7 3.6096 0.3789 2.1972 10 6 3.1198 0.5035 -1.3527 11 6 2.6549 -0.4540 -2.4534 12 6 3.1650 -1.8636 -2.1456 13 7 2.6474 -2.2992 -0.8422 14 6 3.0028 -3.6995 -0.5760 15 6 4.4976 -3.8186 -0.4261 16 1 5.1213 -2.9419 -0.5196 17 6 5.0690 -5.0469 -0.1694 18 7 6.3736 -5.1508 -0.0391 19 14 3.9904 -6.5634 -0.0082 20 1 3.8246 -7.1969 -1.3411 21 1 4.6290 -7.5284 0.9225 22 1 2.6601 -6.1705 0.5221 23 6 3.1196 -1.4221 0.2367 24 1 2.6433 2.7009 0.0259 25 1 3.4698 4.1738 1.8501 26 1 4.3980 3.1197 3.9018 27 1 4.4624 0.6639 4.0694 28 1 2.7223 1.5001 -1.5449 29 1 4.2090 0.5423 -1.3386 30 1 3.0518 -0.1249 -3.4137 31 1 1.5655 -0.4618 -2.4927 32 1 4.2548 -1.8579 -2.1201 33 1 2.8237 -2.5506 -2.9200 34 1 2.5181 -4.0289 0.3431 35 1 2.6701 -4.3230 -1.4059 36 1 6.7755 -6.0150 0.1419 37 1 2.7452 -1.7883 1.1926 38 1 4.2095 -1.4185 0.2510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852327063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:25 Heat of formation + Delta-G solvation = 69.506685 kcal Electronic energy + Delta-G solvation = -20743.082191 eV Core-core repulsion = 17778.538166 eV Total energy + Delta-G solvation = -2964.544024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72427 -38.67031 -35.89726 -34.08125 -32.75895 -32.32837 -31.51688 -29.42933 -27.44234 -24.39453 -24.31488 -23.00474 -22.09303 -21.40926 -19.92753 -17.40944 -16.97880 -16.34321 -16.18046 -15.68010 -14.86224 -14.28329 -14.17138 -13.99818 -13.86268 -13.63429 -13.30151 -13.06251 -12.82713 -12.46857 -12.39258 -12.08880 -11.99580 -11.51936 -11.38031 -11.23925 -10.90330 -10.62226 -10.39403 -10.17134 -10.12528 -9.95511 -9.84253 -9.51155 -9.30067 -9.10020 -8.57592 -7.23907 -6.09088 -4.08645 0.97869 1.21977 3.05031 3.10777 3.29807 3.37730 3.42774 3.66821 4.04923 4.39113 4.42522 4.52769 4.76918 4.89751 4.91826 5.02264 5.08913 5.16492 5.24663 5.34190 5.51195 5.57836 5.67731 5.82888 6.01057 6.04648 6.06532 6.09159 6.18969 6.36564 6.56070 6.58790 6.72865 6.76385 6.96706 7.09722 7.54949 7.88762 7.97467 8.01580 8.07541 8.44988 8.92704 9.54108 11.03654 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.005993 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.604270 B = 4670.851917 C = 5361.287588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.246 3.754 3 C 0.088 3.912 4 C 0.142 3.858 5 C -0.162 4.162 6 C -0.076 4.076 7 C -0.175 4.175 8 C 0.105 3.895 9 N -0.460 5.460 10 C -0.104 4.104 11 C -0.120 4.120 12 C 0.056 3.944 13 N -0.540 5.540 14 C 0.156 3.844 15 C -0.549 4.549 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.090 3.910 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.159 0.841 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.083 0.917 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 16.440 1.687 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.073 4.073 3 C 0.083 3.917 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.102 4.102 7 C -0.195 4.195 8 C -0.052 4.052 9 N -0.167 5.167 10 C -0.143 4.143 11 C -0.158 4.158 12 C -0.072 4.072 13 N -0.263 5.263 14 C 0.030 3.970 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.040 4.040 24 H 0.154 0.846 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.176 0.824 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.482 15.412 1.794 16.456 hybrid contribution 0.987 -0.061 0.161 1.002 sum -4.495 15.351 1.955 16.115 Atomic orbital electron populations 1.81087 1.12481 1.09367 1.08657 1.28338 0.93999 0.92229 0.92706 1.17240 0.82327 0.98286 0.93877 1.20669 0.95210 0.91103 0.92760 1.21950 1.01642 0.94051 1.00568 1.21541 0.95371 1.00356 0.92912 1.22187 1.01494 0.96679 0.99117 1.22853 0.94949 0.90578 0.96835 1.67513 1.08341 1.40739 1.00141 1.21733 1.02011 0.98963 0.91560 1.21692 1.01270 0.95535 0.97293 1.21961 0.98705 0.94129 0.92412 1.62374 1.58496 1.04384 1.01086 1.20165 0.95639 0.84515 0.96678 1.21661 0.91347 0.95936 1.49847 0.90536 1.24934 0.94750 0.98920 0.94270 1.69929 1.09839 1.24942 1.48934 0.86837 0.81416 0.83094 0.78342 1.20252 1.21323 1.18784 1.21771 0.99734 0.86534 0.95912 0.84623 0.84770 0.84762 0.82361 0.91268 0.89674 0.91090 0.91765 0.93297 0.91305 0.95146 0.95575 0.92729 0.89823 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.23 18.54 42.15 0.78 -7.45 16 2 C 0.25 4.19 12.25 -20.76 -0.25 3.94 16 3 C 0.09 1.36 0.57 -158.37 -0.09 1.27 16 4 C 0.14 2.03 5.53 -82.59 -0.46 1.57 16 5 C -0.16 -1.81 9.12 -39.44 -0.36 -2.17 16 6 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 7 C -0.17 -1.64 10.11 -39.44 -0.40 -2.04 16 8 C 0.11 1.25 11.18 -17.55 -0.20 1.05 16 9 N -0.46 -7.03 9.05 -9.47 -0.09 -7.11 16 10 C -0.10 -1.34 4.32 -26.61 -0.11 -1.46 16 11 C -0.12 -1.68 5.83 -26.65 -0.16 -1.84 16 12 C 0.06 1.02 5.13 -3.84 -0.02 1.00 16 13 N -0.54 -11.06 4.45 -236.12 -1.05 -12.11 16 14 C 0.16 3.73 4.20 -4.97 -0.02 3.71 16 15 C -0.55 -14.87 8.29 -34.44 -0.29 -15.15 16 16 H 0.08 2.22 6.08 -52.49 -0.32 1.90 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 19 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 23 C 0.09 1.73 3.02 -3.84 -0.01 1.72 16 24 H 0.14 1.23 6.78 -52.49 -0.36 0.88 16 25 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 26 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.16 1.51 8.06 -52.48 -0.42 1.08 16 28 H 0.07 0.71 6.82 -51.93 -0.35 0.36 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.95 7.36 -51.92 -0.38 0.57 16 32 H 0.05 0.96 7.03 -51.92 -0.37 0.60 16 33 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 34 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 35 H 0.03 0.62 7.49 -51.93 -0.39 0.23 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 1.74 7.87 -51.93 -0.41 1.33 16 38 H 0.07 1.48 6.57 -51.93 -0.34 1.14 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -31.99 309.45 -7.44 -39.43 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.99 Total: -0.46 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.86 Total: -7.51 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.42 Total: -52.81 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.99 -7.44 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852327063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.932 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds