Wall clock time and date at job start Mon Mar 30 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50696 * 109.50035 * 230.47686 * 3 2 1 5 5 C 1.38229 * 119.62165 * 284.81079 * 4 3 2 6 6 C 1.38630 * 119.15967 * 179.75585 * 5 4 3 7 7 C 1.38670 * 118.42183 * 0.50701 * 6 5 4 8 8 C 1.38185 * 119.16258 * 359.73186 * 7 6 5 9 9 N 1.31859 * 119.61639 * 105.08017 * 4 3 2 10 10 C 1.53114 * 109.53454 * 110.38330 * 3 2 1 11 11 C 1.53123 * 109.16198 * 297.68970 * 10 3 2 12 12 C 1.53035 * 109.27774 * 302.35270 * 11 10 3 13 13 N 1.46846 * 109.52744 * 59.17321 * 12 11 10 14 14 C 1.46904 * 110.99942 * 174.16069 * 13 12 11 15 15 C 1.50699 * 109.46940 * 66.04866 * 14 13 12 16 16 H 1.08000 * 120.00210 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99534 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00050 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47181 * 89.99991 * 19 17 15 21 21 H 1.48498 * 109.47094 * 209.99913 * 19 17 15 22 22 H 1.48500 * 109.46939 * 329.99825 * 19 17 15 23 23 C 1.46844 * 111.19783 * 298.26158 * 13 12 11 24 24 H 1.07999 * 120.41688 * 359.97438 * 5 4 3 25 25 H 1.08003 * 120.78501 * 180.21179 * 6 5 4 26 26 H 1.07999 * 120.41929 * 179.75549 * 7 6 5 27 27 H 1.08004 * 119.61509 * 180.02562 * 8 7 6 28 28 H 1.09000 * 109.52528 * 57.59610 * 10 3 2 29 29 H 1.09001 * 109.52673 * 177.72312 * 10 3 2 30 30 H 1.08995 * 109.51026 * 182.40543 * 11 10 3 31 31 H 1.09011 * 109.49940 * 62.28508 * 11 10 3 32 32 H 1.09008 * 109.45841 * 299.15478 * 12 11 10 33 33 H 1.09003 * 109.46290 * 179.19461 * 12 11 10 34 34 H 1.08999 * 109.47060 * 186.04709 * 14 13 12 35 35 H 1.08999 * 109.47352 * 306.05023 * 14 13 12 36 36 H 0.97008 * 119.99138 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46271 * 181.75698 * 23 13 12 38 38 H 1.08998 * 109.46026 * 301.72258 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1107 0.9049 1.0957 5 6 3.0486 2.2761 0.9323 6 6 3.5090 3.0990 1.9486 7 6 4.0267 2.5093 3.0919 8 6 4.0611 1.1308 3.1820 9 7 3.6096 0.3789 2.1972 10 6 3.1198 0.5035 -1.3527 11 6 2.6549 -0.4540 -2.4534 12 6 3.1650 -1.8636 -2.1456 13 7 2.6474 -2.2992 -0.8422 14 6 3.0028 -3.6995 -0.5760 15 6 4.4976 -3.8186 -0.4261 16 1 5.1213 -2.9419 -0.5196 17 6 5.0690 -5.0469 -0.1694 18 7 6.3736 -5.1508 -0.0391 19 14 3.9904 -6.5634 -0.0082 20 1 3.8246 -7.1969 -1.3411 21 1 4.6290 -7.5284 0.9225 22 1 2.6601 -6.1705 0.5221 23 6 3.1196 -1.4221 0.2367 24 1 2.6433 2.7009 0.0259 25 1 3.4698 4.1738 1.8501 26 1 4.3980 3.1197 3.9018 27 1 4.4624 0.6639 4.0694 28 1 2.7223 1.5001 -1.5449 29 1 4.2090 0.5423 -1.3386 30 1 3.0518 -0.1249 -3.4137 31 1 1.5655 -0.4618 -2.4927 32 1 4.2548 -1.8579 -2.1201 33 1 2.8237 -2.5506 -2.9200 34 1 2.5181 -4.0289 0.3431 35 1 2.6701 -4.3230 -1.4059 36 1 6.7755 -6.0150 0.1419 37 1 2.7452 -1.7883 1.1926 38 1 4.2095 -1.4185 0.2510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852327063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:25 Heat of formation + Delta-G solvation = 47.946232 kcal Electronic energy + Delta-G solvation = -20744.017122 eV Core-core repulsion = 17778.538166 eV Total energy + Delta-G solvation = -2965.478956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76309 -39.92360 -37.38960 -35.59757 -34.25221 -33.59712 -32.81293 -30.56573 -29.29084 -25.84271 -25.53389 -24.20627 -23.16693 -22.86565 -21.49894 -19.13200 -18.28724 -17.59741 -17.18236 -16.77769 -16.36607 -15.88983 -15.47794 -15.29906 -15.21892 -14.93022 -14.73066 -14.37354 -14.04338 -13.96330 -13.66632 -13.52876 -13.35051 -13.11667 -12.88568 -12.64811 -12.46596 -12.22722 -12.03743 -11.77616 -11.69211 -11.51950 -11.24142 -10.79144 -10.76616 -10.27243 -9.97317 -9.00846 -8.29344 -6.33071 0.11637 0.42075 1.34584 1.37099 1.48407 1.73886 1.74595 2.34720 2.65317 2.99062 3.05825 3.13409 3.39401 3.69463 3.90271 3.95394 4.11016 4.12726 4.24322 4.28867 4.35618 4.63562 4.66674 4.75232 4.78815 4.87190 4.94487 4.96809 5.05496 5.06347 5.17476 5.18861 5.23163 5.30946 5.36801 5.52411 5.80351 6.09689 6.31655 6.42501 6.54781 6.72201 7.09496 7.33271 8.86398 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.005993 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.604270 B = 4670.851917 C = 5361.287588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.260 3.740 3 C 0.095 3.905 4 C 0.112 3.888 5 C -0.159 4.159 6 C -0.071 4.071 7 C -0.161 4.161 8 C 0.082 3.918 9 N -0.509 5.509 10 C -0.101 4.101 11 C -0.111 4.111 12 C 0.054 3.946 13 N -0.542 5.542 14 C 0.163 3.837 15 C -0.543 4.543 16 H 0.044 0.956 17 C 0.016 3.984 18 N -0.943 5.943 19 Si 0.940 3.060 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.254 1.254 23 C 0.102 3.898 24 H 0.160 0.840 25 H 0.175 0.825 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.031 0.969 36 H 0.265 0.735 37 H 0.057 0.943 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 18.879 1.298 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.058 4.058 3 C 0.090 3.910 4 C -0.027 4.027 5 C -0.179 4.179 6 C -0.096 4.096 7 C -0.180 4.180 8 C -0.075 4.075 9 N -0.218 5.218 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.074 4.074 13 N -0.265 5.265 14 C 0.035 3.965 15 C -0.582 4.582 16 H 0.062 0.938 17 C -0.182 4.182 18 N -0.583 5.583 19 Si 0.765 3.235 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.178 1.178 23 C -0.027 4.027 24 H 0.178 0.822 25 H 0.192 0.808 26 H 0.188 0.812 27 H 0.186 0.814 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.522 17.872 1.395 19.076 hybrid contribution 1.382 -0.730 0.354 1.603 sum -5.140 17.142 1.749 17.981 Atomic orbital electron populations 1.81090 1.13299 1.10210 1.09912 1.28596 0.94206 0.91379 0.91652 1.17199 0.81306 0.96027 0.96429 1.20561 0.97385 0.92257 0.92508 1.22206 1.01016 0.92606 1.02070 1.22047 0.93625 1.02159 0.91812 1.22578 0.99659 0.95677 1.00125 1.23200 0.95527 0.92133 0.96639 1.67367 1.10049 1.42905 1.01512 1.21820 1.02320 1.00506 0.89331 1.21657 1.01015 0.92827 0.99343 1.22063 0.97361 0.97099 0.90925 1.62405 1.58429 1.03005 1.02630 1.19999 0.93130 0.87095 0.96261 1.21832 0.92842 0.94819 1.48690 0.93792 1.25787 0.95968 1.02263 0.94173 1.70064 1.11725 1.25859 1.50694 0.85806 0.79779 0.79118 0.78839 1.18986 1.20994 1.17834 1.21509 0.97855 0.88972 0.94400 0.82222 0.80750 0.81212 0.81369 0.87244 0.89386 0.87735 0.91999 0.95637 0.91351 0.96147 0.95081 0.92581 0.92429 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.18 18.54 20.01 0.37 -16.81 16 2 C 0.26 8.68 12.25 89.44 1.10 9.77 16 3 C 0.10 2.93 0.57 -54.68 -0.03 2.90 16 4 C 0.11 3.12 5.53 42.55 0.24 3.36 16 5 C -0.16 -3.09 9.12 22.36 0.20 -2.89 16 6 C -0.07 -1.03 10.18 22.47 0.23 -0.80 16 7 C -0.16 -2.54 10.11 22.36 0.23 -2.31 16 8 C 0.08 1.90 11.18 84.67 0.95 2.85 16 9 N -0.51 -15.95 9.05 -183.88 -1.66 -17.61 16 10 C -0.10 -2.42 4.32 30.67 0.13 -2.29 16 11 C -0.11 -2.90 5.83 30.65 0.18 -2.72 16 12 C 0.05 1.95 5.13 86.33 0.44 2.39 16 13 N -0.54 -22.76 4.45 -900.93 -4.01 -26.77 16 14 C 0.16 7.95 4.20 85.56 0.36 8.31 16 15 C -0.54 -30.65 8.29 25.60 0.21 -30.44 16 16 H 0.04 2.72 6.08 -2.91 -0.02 2.70 16 17 C 0.02 0.95 5.47 84.65 0.46 1.42 16 18 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 19 Si 0.94 44.67 27.47 68.60 1.88 46.55 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 23 C 0.10 4.13 3.02 86.32 0.26 4.39 16 24 H 0.16 2.20 6.78 -2.91 -0.02 2.18 16 25 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 26 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 27 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.11 1.79 6.82 -2.39 -0.02 1.77 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.69 7.36 -2.38 -0.02 1.67 16 32 H 0.03 1.04 7.03 -2.38 -0.02 1.02 16 33 H 0.07 2.45 8.06 -2.39 -0.02 2.43 16 34 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 35 H 0.03 1.49 7.49 -2.39 -0.02 1.47 16 36 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 37 H 0.06 2.56 7.87 -2.39 -0.02 2.54 16 38 H 0.04 1.87 6.57 -2.39 -0.02 1.86 16 Total: -1.00 -73.34 309.45 2.84 -70.50 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.01 Total: 8.29 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 4.95 Total: -6.06 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -5.01 Total: -119.29 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -73.34 2.84 -70.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852327063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.449 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds