Wall clock time and date at job start Mon Mar 30 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46818 * 2 1 4 4 C 1.50694 * 109.47253 * 120.00606 * 2 1 3 5 5 H 1.07991 * 120.00481 * 114.36407 * 4 2 1 6 6 C 1.37879 * 119.99554 * 294.35780 * 4 2 1 7 7 N 1.31522 * 119.99865 * 156.77132 * 6 4 2 8 8 Si 1.86801 * 120.00552 * 336.77041 * 6 4 2 9 9 H 1.48497 * 109.47283 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46763 * 59.99898 * 8 6 4 11 11 H 1.48499 * 109.46984 * 300.00274 * 8 6 4 12 12 C 1.50699 * 109.47170 * 240.00695 * 2 1 3 13 13 O 1.21279 * 119.99723 * 239.99576 * 12 2 1 14 14 N 1.34784 * 120.00160 * 59.99474 * 12 2 1 15 15 C 1.46496 * 119.99913 * 179.97438 * 14 12 2 16 16 H 1.08998 * 115.54044 * 350.59451 * 15 14 12 17 17 C 1.53040 * 117.48444 * 204.99910 * 15 14 12 18 18 H 1.09003 * 119.40632 * 5.42571 * 17 15 14 19 19 C 1.53436 * 118.58754 * 161.07542 * 17 15 14 20 20 C 1.50965 * 107.03404 * 62.97545 * 19 17 15 21 21 C 1.38790 * 129.72620 * 180.34424 * 20 19 17 22 22 C 1.38014 * 120.31414 * 179.97438 * 21 20 19 23 23 C 1.38245 * 119.87712 * 359.96553 * 22 21 20 24 24 C 1.38011 * 119.89038 * 0.02562 * 23 22 21 25 25 C 1.37815 * 110.46174 * 0.32446 * 20 19 17 26 26 C 1.50934 * 110.47920 * 0.06372 * 25 20 19 27 27 H 1.08998 * 117.44797 * 139.27296 * 26 25 20 28 28 H 1.08995 * 109.47403 * 293.07529 * 1 2 3 29 29 H 1.08998 * 109.47720 * 53.08108 * 1 2 3 30 30 H 1.09007 * 109.46493 * 173.07748 * 1 2 3 31 31 H 0.96995 * 119.99732 * 354.93344 * 7 6 4 32 32 H 0.97000 * 119.99751 * 0.02562 * 14 12 2 33 33 H 1.08994 * 109.92189 * 182.32136 * 19 17 15 34 34 H 1.08999 * 109.91835 * 303.63207 * 19 17 15 35 35 H 1.08006 * 119.83973 * 359.95017 * 21 20 19 36 36 H 1.07997 * 120.06132 * 179.97438 * 22 21 20 37 37 H 1.08009 * 120.05473 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.84509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5761 -1.6385 1.1338 6 6 1.7978 -0.1756 2.4793 7 7 1.8058 -0.9534 3.5398 8 14 1.4688 1.6538 2.6652 9 1 1.2484 1.9740 4.0984 10 1 0.2598 2.0211 1.8849 11 1 2.6358 2.4205 2.1600 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6963 -1.1193 14 7 1.7067 -0.2497 -2.4547 15 6 2.1955 -0.9399 -3.6509 16 1 2.9411 -1.7151 -3.4744 17 6 2.3191 -0.1210 -4.9378 18 1 2.1309 0.9523 -4.9094 19 6 3.2146 -0.6540 -6.0640 20 6 2.6181 -1.9632 -6.5212 21 6 3.0519 -2.8398 -7.5059 22 6 2.3483 -3.9982 -7.7665 23 6 1.2063 -4.2878 -7.0432 24 6 0.7735 -3.4174 -6.0635 25 6 1.4792 -2.2514 -5.8007 26 6 1.2023 -1.1626 -4.7927 27 1 0.1656 -0.8542 -4.6584 28 1 -0.3634 0.4028 0.9454 29 1 -0.3634 0.6173 -0.8216 30 1 -0.3632 -1.0203 -0.1239 31 1 1.9033 -1.9129 3.4368 32 1 1.1493 0.5391 -2.5436 33 1 3.2323 0.0552 -6.8915 34 1 4.2251 -0.8170 -5.6893 35 1 3.9441 -2.6141 -8.0712 36 1 2.6893 -4.6772 -8.5340 37 1 0.6537 -5.1937 -7.2445 38 1 -0.1189 -3.6441 -5.4992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926763631.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:10 Heat of formation + Delta-G solvation = 10.383094 kcal Electronic energy + Delta-G solvation = -19806.319667 eV Core-core repulsion = 16806.919101 eV Total energy + Delta-G solvation = -2999.400567 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89896 -38.88287 -37.14549 -33.80160 -33.44958 -31.62253 -31.06139 -29.78330 -27.72937 -24.86317 -23.86518 -22.48045 -21.67309 -20.53885 -20.48477 -19.34446 -17.40971 -16.71266 -16.27698 -15.93845 -15.24553 -15.06162 -14.37488 -13.94894 -13.67227 -13.62086 -13.29236 -13.15577 -12.70647 -12.64257 -12.53933 -12.07585 -11.79979 -11.53027 -11.41370 -11.26215 -10.98297 -10.88189 -10.54863 -10.23173 -10.08568 -9.86617 -9.03295 -8.95664 -8.86579 -8.79716 -8.19394 -8.13744 -6.47311 -4.02812 1.19208 1.24757 3.23627 3.35105 3.38838 3.41941 3.58309 3.63113 3.91210 4.44883 4.50140 4.56117 4.73049 4.77074 4.91809 4.96277 5.02218 5.21667 5.26202 5.38935 5.45004 5.57192 5.63116 5.74184 5.80186 5.89542 6.07604 6.13753 6.17116 6.30284 6.37623 6.39499 6.50091 6.54233 6.83880 6.86879 6.93467 7.21323 7.77630 8.21124 8.47202 9.03826 9.05036 9.63246 10.92292 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036780 B = 0.003755 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.110841 B = 7455.615128 C = 7685.529774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.007 3.993 3 H 0.045 0.955 4 C -0.597 4.597 5 H 0.076 0.924 6 C 0.036 3.964 7 N -0.897 5.897 8 Si 1.035 2.965 9 H -0.284 1.284 10 H -0.277 1.277 11 H -0.283 1.283 12 C 0.531 3.469 13 O -0.530 6.530 14 N -0.717 5.717 15 C 0.135 3.865 16 H 0.133 0.867 17 C -0.172 4.172 18 H 0.123 0.877 19 C -0.050 4.050 20 C -0.096 4.096 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.101 4.101 25 C -0.057 4.057 26 C -0.144 4.144 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.271 0.729 32 H 0.398 0.602 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 1.205 -22.960 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.015 4.015 3 H 0.063 0.937 4 C -0.635 4.635 5 H 0.094 0.906 6 C -0.170 4.170 7 N -0.529 5.529 8 Si 0.862 3.138 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.209 1.209 12 C 0.320 3.680 13 O -0.403 6.403 14 N -0.368 5.368 15 C 0.027 3.973 16 H 0.151 0.849 17 C -0.191 4.191 18 H 0.141 0.859 19 C -0.087 4.087 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.057 4.057 26 C -0.164 4.164 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.232 0.768 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.668 1.656 -21.663 21.791 hybrid contribution -0.164 -0.845 -1.338 1.591 sum -1.832 0.810 -23.001 23.088 Atomic orbital electron populations 1.22120 0.96978 1.00393 1.00330 1.19180 0.93643 0.96843 0.91864 0.93734 1.21885 1.40577 1.11497 0.89530 0.90621 1.25710 0.93562 1.05676 0.92011 1.70819 1.43742 1.06561 1.31814 0.84183 0.77032 0.76193 0.76368 1.20929 1.20322 1.20936 1.21598 0.78453 0.84278 0.83652 1.90566 1.37072 1.26362 1.86335 1.45732 1.54735 1.31802 1.04506 1.21388 0.97804 0.97571 0.80531 0.84930 1.23432 1.00242 0.97696 0.97740 0.85880 1.20239 0.98967 0.93124 0.96409 1.20509 0.95824 0.96897 0.96332 1.20618 1.00125 0.94219 0.97724 1.21001 0.95814 0.97024 1.00153 1.21020 0.97138 0.99442 0.96410 1.20736 1.00077 0.93261 0.97845 1.19673 0.95426 0.94593 0.96026 1.22056 0.97089 0.96365 1.00855 0.86473 0.91950 0.95515 0.93380 0.91882 0.76795 0.89758 0.89750 0.86215 0.85931 0.85881 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.77 37.16 0.33 -2.56 16 2 C 0.01 0.15 2.23 -92.93 -0.21 -0.05 16 3 H 0.05 0.99 6.72 -51.93 -0.35 0.64 16 4 C -0.60 -17.25 8.57 -34.44 -0.30 -17.54 16 5 H 0.08 2.49 7.02 -52.49 -0.37 2.12 16 6 C 0.04 1.05 5.19 -17.82 -0.09 0.96 16 7 N -0.90 -27.64 13.70 55.43 0.76 -26.88 16 8 Si 1.03 24.26 26.45 -169.99 -4.50 19.77 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -5.83 6.16 56.52 0.35 -5.48 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.53 11.83 7.14 -10.98 -0.08 11.75 16 13 O -0.53 -14.03 15.03 5.56 0.08 -13.95 16 14 N -0.72 -11.91 5.47 -53.80 -0.29 -12.20 16 15 C 0.13 2.04 6.01 -67.93 -0.41 1.63 16 16 H 0.13 2.35 7.40 -51.93 -0.38 1.96 16 17 C -0.17 -1.96 7.03 -90.16 -0.63 -2.60 16 18 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.05 -0.52 6.57 -27.53 -0.18 -0.70 16 20 C -0.10 -1.12 6.12 -104.44 -0.64 -1.76 16 21 C -0.11 -1.13 10.04 -39.46 -0.40 -1.52 16 22 C -0.12 -1.19 10.05 -39.66 -0.40 -1.59 16 23 C -0.12 -1.26 10.04 -39.66 -0.40 -1.66 16 24 C -0.10 -1.21 10.04 -39.46 -0.40 -1.60 16 25 C -0.06 -0.73 5.94 -104.46 -0.62 -1.35 16 26 C -0.14 -1.84 6.80 -91.46 -0.62 -2.46 16 27 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.06 1.34 5.49 -51.93 -0.28 1.06 16 29 H 0.03 0.43 7.77 -51.93 -0.40 0.03 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.27 8.43 8.73 -40.82 -0.36 8.08 16 32 H 0.40 5.37 8.39 -40.82 -0.34 5.03 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -33.54 316.00 -9.37 -42.91 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.14 Total: 6.66 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -5.04 Total: -21.07 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.46 Total: -39.08 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.08 Total: -13.95 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.50 Total: 19.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.54 -9.37 -42.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926763631.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.296 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds