Wall clock time and date at job start Mon Mar 30 2020 05:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46818 * 2 1 4 4 C 1.50694 * 109.47253 * 120.00606 * 2 1 3 5 5 H 1.07991 * 120.00481 * 114.36407 * 4 2 1 6 6 C 1.37879 * 119.99554 * 294.35780 * 4 2 1 7 7 N 1.31522 * 119.99865 * 156.77132 * 6 4 2 8 8 Si 1.86801 * 120.00552 * 336.77041 * 6 4 2 9 9 H 1.48497 * 109.47283 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46763 * 59.99898 * 8 6 4 11 11 H 1.48499 * 109.46984 * 300.00274 * 8 6 4 12 12 C 1.50699 * 109.47170 * 240.00695 * 2 1 3 13 13 O 1.21279 * 119.99723 * 239.99576 * 12 2 1 14 14 N 1.34784 * 120.00160 * 59.99474 * 12 2 1 15 15 C 1.46496 * 119.99913 * 179.97438 * 14 12 2 16 16 H 1.08998 * 115.54044 * 350.59451 * 15 14 12 17 17 C 1.53040 * 117.48444 * 204.99910 * 15 14 12 18 18 H 1.09003 * 119.40632 * 5.42571 * 17 15 14 19 19 C 1.53436 * 118.58754 * 161.07542 * 17 15 14 20 20 C 1.50965 * 107.03404 * 62.97545 * 19 17 15 21 21 C 1.38790 * 129.72620 * 180.34424 * 20 19 17 22 22 C 1.38014 * 120.31414 * 179.97438 * 21 20 19 23 23 C 1.38245 * 119.87712 * 359.96553 * 22 21 20 24 24 C 1.38011 * 119.89038 * 0.02562 * 23 22 21 25 25 C 1.37815 * 110.46174 * 0.32446 * 20 19 17 26 26 C 1.50934 * 110.47920 * 0.06372 * 25 20 19 27 27 H 1.08998 * 117.44797 * 139.27296 * 26 25 20 28 28 H 1.08995 * 109.47403 * 293.07529 * 1 2 3 29 29 H 1.08998 * 109.47720 * 53.08108 * 1 2 3 30 30 H 1.09007 * 109.46493 * 173.07748 * 1 2 3 31 31 H 0.96995 * 119.99732 * 354.93344 * 7 6 4 32 32 H 0.97000 * 119.99751 * 0.02562 * 14 12 2 33 33 H 1.08994 * 109.92189 * 182.32136 * 19 17 15 34 34 H 1.08999 * 109.91835 * 303.63207 * 19 17 15 35 35 H 1.08006 * 119.83973 * 359.95017 * 21 20 19 36 36 H 1.07997 * 120.06132 * 179.97438 * 22 21 20 37 37 H 1.08009 * 120.05473 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.84509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5761 -1.6385 1.1338 6 6 1.7978 -0.1756 2.4793 7 7 1.8058 -0.9534 3.5398 8 14 1.4688 1.6538 2.6652 9 1 1.2484 1.9740 4.0984 10 1 0.2598 2.0211 1.8849 11 1 2.6358 2.4205 2.1600 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6963 -1.1193 14 7 1.7067 -0.2497 -2.4547 15 6 2.1955 -0.9399 -3.6509 16 1 2.9411 -1.7151 -3.4744 17 6 2.3191 -0.1210 -4.9378 18 1 2.1309 0.9523 -4.9094 19 6 3.2146 -0.6540 -6.0640 20 6 2.6181 -1.9632 -6.5212 21 6 3.0519 -2.8398 -7.5059 22 6 2.3483 -3.9982 -7.7665 23 6 1.2063 -4.2878 -7.0432 24 6 0.7735 -3.4174 -6.0635 25 6 1.4792 -2.2514 -5.8007 26 6 1.2023 -1.1626 -4.7927 27 1 0.1656 -0.8542 -4.6584 28 1 -0.3634 0.4028 0.9454 29 1 -0.3634 0.6173 -0.8216 30 1 -0.3632 -1.0203 -0.1239 31 1 1.9033 -1.9129 3.4368 32 1 1.1493 0.5391 -2.5436 33 1 3.2323 0.0552 -6.8915 34 1 4.2251 -0.8170 -5.6893 35 1 3.9441 -2.6141 -8.0712 36 1 2.6893 -4.6772 -8.5340 37 1 0.6537 -5.1937 -7.2445 38 1 -0.1189 -3.6441 -5.4992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926763631.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:09 Heat of formation + Delta-G solvation = -11.725313 kcal Electronic energy + Delta-G solvation = -19807.278360 eV Core-core repulsion = 16806.919101 eV Total energy + Delta-G solvation = -3000.359259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87096 -40.46722 -38.18665 -35.82243 -34.87922 -33.15156 -32.32137 -30.83862 -28.58479 -26.82468 -25.25934 -23.72286 -22.77366 -21.62987 -21.39597 -20.98535 -19.50244 -17.87153 -17.83422 -17.00785 -16.15876 -16.07149 -16.03169 -15.60115 -15.18939 -14.65974 -14.52004 -14.40018 -13.98641 -13.83467 -13.65975 -13.48674 -13.33329 -13.08236 -12.83816 -12.36667 -12.24638 -12.19696 -11.98297 -11.74745 -11.65448 -11.11277 -11.06135 -10.65362 -10.35720 -10.14603 -9.70099 -9.23322 -8.79119 -6.35139 0.34198 0.42654 1.49963 1.59559 1.69548 1.79163 2.06620 2.55373 2.56114 2.94019 3.03084 3.51581 3.58943 3.72127 3.91559 4.03186 4.10189 4.15131 4.23250 4.37570 4.45349 4.57961 4.64610 4.67015 4.73864 4.83749 4.84748 4.91117 5.00407 5.10356 5.15259 5.24757 5.48367 5.50929 5.51150 5.57745 5.71026 5.85907 6.05828 6.07396 6.60879 6.67910 7.36595 7.45838 8.59133 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036780 B = 0.003755 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.110841 B = 7455.615128 C = 7685.529774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.001 3.999 3 H 0.072 0.928 4 C -0.612 4.612 5 H 0.013 0.987 6 C -0.016 4.016 7 N -0.930 5.930 8 Si 1.083 2.917 9 H -0.291 1.291 10 H -0.227 1.227 11 H -0.262 1.262 12 C 0.528 3.472 13 O -0.590 6.590 14 N -0.689 5.689 15 C 0.096 3.904 16 H 0.095 0.905 17 C -0.138 4.138 18 H 0.153 0.847 19 C -0.052 4.052 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.089 4.089 26 C -0.136 4.136 27 H 0.128 0.872 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.249 0.751 32 H 0.418 0.582 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 4.218 -26.218 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.649 4.649 5 H 0.031 0.969 6 C -0.214 4.214 7 N -0.565 5.565 8 Si 0.901 3.099 9 H -0.217 1.217 10 H -0.150 1.150 11 H -0.187 1.187 12 C 0.317 3.683 13 O -0.468 6.468 14 N -0.340 5.340 15 C -0.011 4.011 16 H 0.113 0.887 17 C -0.157 4.157 18 H 0.171 0.829 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.089 4.089 26 C -0.156 4.156 27 H 0.146 0.854 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.256 0.744 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.791 4.686 -25.007 25.595 hybrid contribution 0.245 -1.960 -0.444 2.025 sum -2.546 2.726 -25.451 25.723 Atomic orbital electron populations 1.21995 0.94203 1.00634 1.02299 1.19162 0.95639 0.97248 0.90019 0.91022 1.21976 1.40289 1.09820 0.92841 0.96887 1.27490 0.92343 1.10321 0.91284 1.70975 1.46911 1.05505 1.33102 0.83636 0.79724 0.69584 0.76913 1.21679 1.15004 1.18735 1.21409 0.78026 0.83567 0.85251 1.90551 1.39977 1.28991 1.87319 1.45231 1.53708 1.31790 1.03312 1.21324 0.99471 0.99150 0.81154 0.88685 1.23573 0.99033 0.98717 0.94336 0.82925 1.20351 0.98489 0.93244 0.96787 1.20799 0.95570 0.97785 0.96639 1.20979 1.00885 0.94070 0.97492 1.21409 0.95184 0.97177 1.00217 1.21346 0.97614 0.99856 0.95890 1.20965 1.00537 0.93701 0.98730 1.19893 0.96727 0.95353 0.96931 1.22051 0.97558 0.97264 0.98695 0.85388 0.92485 0.89926 0.95099 0.94220 0.74409 0.86851 0.89743 0.83891 0.83170 0.83824 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.77 71.98 0.63 -4.53 16 2 C 0.00 0.05 2.23 -12.29 -0.03 0.03 16 3 H 0.07 2.95 6.72 -2.39 -0.02 2.93 16 4 C -0.61 -36.80 8.57 25.60 0.22 -36.58 16 5 H 0.01 0.91 7.02 -2.91 -0.02 0.89 16 6 C -0.02 -0.97 5.19 84.65 0.44 -0.53 16 7 N -0.93 -60.03 13.70 21.45 0.29 -59.73 16 8 Si 1.08 47.36 26.45 68.60 1.81 49.17 16 9 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 10 H -0.23 -8.12 6.16 99.48 0.61 -7.51 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 12 C 0.53 23.86 7.14 87.66 0.63 24.49 16 13 O -0.59 -33.28 15.03 -3.03 -0.05 -33.32 16 14 N -0.69 -21.96 5.47 -442.52 -2.42 -24.38 16 15 C 0.10 2.86 6.01 44.99 0.27 3.13 16 16 H 0.10 3.57 7.40 -2.39 -0.02 3.56 16 17 C -0.14 -2.76 7.03 -10.50 -0.07 -2.84 16 18 H 0.15 2.20 8.14 -2.39 -0.02 2.19 16 19 C -0.05 -0.94 6.57 30.08 0.20 -0.74 16 20 C -0.11 -2.34 6.12 -19.75 -0.12 -2.46 16 21 C -0.12 -2.14 10.04 22.35 0.22 -1.92 16 22 C -0.12 -2.10 10.05 22.22 0.22 -1.88 16 23 C -0.13 -2.49 10.04 22.22 0.22 -2.26 16 24 C -0.12 -2.84 10.04 22.35 0.22 -2.61 16 25 C -0.09 -2.20 5.94 -19.76 -0.12 -2.31 16 26 C -0.14 -3.27 6.80 -11.34 -0.08 -3.35 16 27 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.26 5.49 -2.39 -0.01 2.25 16 29 H 0.08 2.27 7.77 -2.39 -0.02 2.25 16 30 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.25 16.68 8.73 -92.71 -0.81 15.87 16 32 H 0.42 9.75 8.39 -92.71 -0.78 8.98 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -81.02 316.00 2.67 -78.36 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.16 Total: 24.28 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 2.86 Total: -34.37 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.13 Total: -84.11 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.05 Total: -33.32 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.81 Total: 49.17 kcal Total: -81.02 2.67 -78.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926763631.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.631 kcal (2) G-P(sol) polarization free energy of solvation -81.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds