Wall clock time and date at job start Mon Mar 30 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.47258 * 60.00321 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00000 * 160.37064 * 7 2 1 9 9 N 1.36929 * 120.00092 * 340.36317 * 7 2 1 10 10 C 1.46507 * 120.00166 * 320.46124 * 9 7 2 11 11 C 1.52998 * 109.47284 * 269.99880 * 10 9 7 12 12 O 1.42901 * 109.46856 * 64.99786 * 11 10 9 13 13 C 1.42901 * 113.99749 * 179.97438 * 12 11 10 14 14 C 1.52581 * 109.23036 * 271.23863 * 13 12 11 15 15 C 1.53090 * 109.95856 * 169.00291 * 14 13 12 16 16 S 1.81744 * 108.84121 * 63.02535 * 15 14 13 17 17 C 1.81748 * 102.22184 * 306.73252 * 16 15 14 18 18 C 1.52586 * 109.22520 * 149.99998 * 13 12 11 19 19 C 1.46506 * 120.00361 * 140.45986 * 9 7 2 20 20 C 1.53006 * 117.49317 * 3.29084 * 19 9 7 21 21 C 1.52999 * 117.49701 * 294.67080 * 19 9 7 22 22 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 23 23 H 1.08996 * 109.46831 * 30.00293 * 10 9 7 24 24 H 1.08997 * 109.47005 * 149.99419 * 10 9 7 25 25 H 1.08997 * 109.46854 * 184.99827 * 11 10 9 26 26 H 1.09001 * 109.46944 * 305.00156 * 11 10 9 27 27 H 1.08999 * 109.21942 * 30.59872 * 13 12 11 28 28 H 1.09007 * 109.38694 * 289.15595 * 14 13 12 29 29 H 1.08998 * 109.38562 * 48.85151 * 14 13 12 30 30 H 1.09001 * 109.57798 * 303.21701 * 15 14 13 31 31 H 1.09002 * 109.57445 * 182.83011 * 15 14 13 32 32 H 1.08997 * 109.57727 * 293.46129 * 17 16 15 33 33 H 1.09004 * 109.57799 * 173.07261 * 17 16 15 34 34 H 1.09001 * 109.38647 * 311.14347 * 18 13 12 35 35 H 1.08997 * 109.39025 * 70.84925 * 18 13 12 36 36 H 1.09002 * 115.55343 * 148.99517 * 19 9 7 37 37 H 1.08997 * 117.49909 * 0.02562 * 20 19 9 38 38 H 1.08999 * 117.49364 * 145.01811 * 20 19 9 39 39 H 1.09002 * 117.49561 * 214.97211 * 21 19 9 40 40 H 1.08998 * 117.50120 * 359.97347 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0432 -1.2290 -0.3148 9 7 1.3854 -2.3536 0.3975 10 6 0.4634 -2.3310 1.5358 11 6 1.2383 -2.6091 2.8254 12 8 2.1614 -1.5449 3.0652 13 6 2.9396 -1.7071 4.2527 14 6 2.1931 -1.0889 5.4312 15 6 2.8698 -1.4872 6.7454 16 16 4.5555 -0.8081 6.7668 17 6 5.2394 -1.4266 5.2007 18 6 4.2959 -1.0351 4.0603 19 6 1.6387 -3.6085 -0.3150 20 6 2.6694 -3.5831 -1.4456 21 6 1.1790 -3.6991 -1.7715 22 1 -0.4850 0.8368 0.0731 23 1 -0.0101 -1.3514 1.6004 24 1 -0.3012 -3.0957 1.3993 25 1 0.5410 -2.6803 3.6601 26 1 1.7837 -3.5476 2.7263 27 1 3.0892 -2.7702 4.4412 28 1 2.2003 -0.0032 5.3348 29 1 1.1624 -1.4437 5.4328 30 1 2.9129 -2.5738 6.8194 31 1 2.3030 -1.0842 7.5847 32 1 5.3287 -2.5120 5.2445 33 1 6.2210 -0.9841 5.0307 34 1 4.7254 -1.3526 3.1101 35 1 4.1659 0.0470 4.0535 36 1 1.5766 -4.5133 0.2896 37 1 3.1592 -2.6330 -1.6589 38 1 3.2856 -4.4714 -1.5847 39 1 0.8148 -4.6636 -2.1252 40 1 0.6876 -2.8253 -2.1995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929465563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:13 Heat of formation + Delta-G solvation = -6.207423 kcal Electronic energy + Delta-G solvation = -19783.877743 eV Core-core repulsion = 16919.201708 eV Total energy + Delta-G solvation = -2864.676034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.36618 -36.89933 -34.74059 -33.16622 -31.53770 -30.81027 -27.94779 -25.90745 -24.14216 -23.04221 -21.63574 -21.19511 -20.54235 -19.60908 -16.93538 -16.50914 -16.17503 -15.23438 -15.07706 -14.58181 -14.24753 -14.06273 -13.72831 -13.68764 -13.01451 -12.96289 -12.75203 -12.36749 -12.16635 -11.74405 -11.51813 -11.42601 -10.94391 -10.70744 -10.64882 -10.56116 -10.42942 -10.15349 -10.02850 -9.74205 -9.64697 -9.54865 -9.25291 -8.83498 -8.35346 -7.73952 -6.44346 -5.67747 -3.31932 1.73160 2.47810 3.43170 3.51290 3.53836 4.12321 4.55360 4.78078 4.85863 4.98565 4.99449 5.10259 5.20828 5.26681 5.36361 5.46831 5.50371 5.61602 5.64689 5.90203 5.92124 6.04467 6.07937 6.08147 6.16063 6.30755 6.35956 6.38378 6.51287 6.54652 6.70314 6.71716 7.08523 7.27462 7.60824 7.89972 8.01162 8.60689 9.24309 9.86968 10.43314 11.28868 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.005979 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.302517 B = 4682.133312 C = 5258.538229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.020 3.980 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.236 4.236 8 H 0.059 0.941 9 N -0.545 5.545 10 C 0.147 3.853 11 C 0.048 3.952 12 O -0.337 6.337 13 C 0.082 3.918 14 C -0.146 4.146 15 C -0.074 4.074 16 S -0.281 6.281 17 C -0.072 4.072 18 C -0.119 4.119 19 C 0.119 3.881 20 C -0.195 4.195 21 C -0.221 4.221 22 H 0.251 0.749 23 H 0.103 0.897 24 H 0.042 0.958 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -5.605 10.386 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.180 4.180 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.366 4.366 8 H 0.077 0.923 9 N -0.261 5.261 10 C 0.021 3.979 11 C -0.031 4.031 12 O -0.255 6.255 13 C 0.023 3.977 14 C -0.185 4.185 15 C -0.222 4.222 16 S -0.055 6.055 17 C -0.220 4.220 18 C -0.158 4.158 19 C 0.010 3.990 20 C -0.233 4.233 21 C -0.262 4.262 22 H 0.061 0.939 23 H 0.120 0.880 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.558 -4.654 11.006 13.178 hybrid contribution -0.203 -0.149 -0.659 0.705 sum 5.355 -4.803 10.347 12.602 Atomic orbital electron populations 1.70036 1.05546 1.25813 1.51899 1.25089 0.94862 0.98516 0.99543 0.86378 0.79888 0.84354 0.76989 1.20149 1.22128 1.21421 1.18849 0.92767 0.84807 1.40134 0.92338 1.43261 1.50420 1.03210 1.29246 1.20976 0.90456 1.03452 0.83025 1.23474 0.91365 0.89038 0.99224 1.88292 1.52789 1.44984 1.39447 1.21867 0.91404 0.97637 0.86838 1.22275 1.00140 1.03226 0.92826 1.23399 0.94258 1.02985 1.01541 1.86750 1.15583 1.72979 1.30218 1.23436 1.01697 1.03445 0.93456 1.21730 0.93504 1.02492 0.98103 1.21229 1.00733 0.90646 0.86379 1.22995 0.92156 1.01718 1.06442 1.23351 0.96827 1.00861 1.05201 0.93860 0.87989 0.93934 0.95662 0.95377 0.93428 0.89944 0.90550 0.90093 0.87869 0.89960 0.87543 0.89419 0.90026 0.89986 0.88472 0.91005 0.91433 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.50 55.49 0.64 -24.81 16 2 C 0.02 0.54 4.98 -17.44 -0.09 0.45 16 3 Si 0.89 22.08 29.60 -169.99 -5.03 17.05 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.30 7.97 -15.07 -0.12 -6.42 16 8 H 0.06 1.61 6.75 -52.48 -0.35 1.25 16 9 N -0.54 -13.21 2.73 -165.66 -0.45 -13.66 16 10 C 0.15 3.33 5.76 -4.04 -0.02 3.31 16 11 C 0.05 0.92 6.05 37.16 0.22 1.14 16 12 O -0.34 -6.87 9.44 -35.23 -0.33 -7.20 16 13 C 0.08 1.28 2.35 -27.16 -0.06 1.22 16 14 C -0.15 -2.01 5.35 -26.90 -0.14 -2.15 16 15 C -0.07 -0.84 6.45 37.20 0.24 -0.60 16 16 S -0.28 -3.57 22.33 -107.50 -2.40 -5.97 16 17 C -0.07 -0.86 6.45 37.21 0.24 -0.62 16 18 C -0.12 -1.76 5.39 -26.89 -0.14 -1.91 16 19 C 0.12 2.54 6.56 -67.92 -0.45 2.09 16 20 C -0.19 -3.88 9.80 -26.73 -0.26 -4.14 16 21 C -0.22 -4.54 10.36 -26.73 -0.28 -4.82 16 22 H 0.25 6.99 8.32 -40.82 -0.34 6.65 16 23 H 0.10 2.66 5.59 -51.93 -0.29 2.37 16 24 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 25 H 0.03 0.43 7.59 -51.93 -0.39 0.03 16 26 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.05 0.70 7.71 -51.93 -0.40 0.30 16 28 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 29 H 0.08 1.04 7.56 -51.93 -0.39 0.64 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.10 2.12 6.46 -51.93 -0.34 1.79 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -28.85 329.92 -10.25 -39.11 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.78 Total: 2.97 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.86 Total: -12.46 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.19 Total: -38.47 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.33 Total: -7.20 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.40 Total: -5.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.85 -10.25 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.898 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds