Wall clock time and date at job start Mon Mar 30 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.47258 * 60.00321 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00000 * 160.37064 * 7 2 1 9 9 N 1.36929 * 120.00092 * 340.36317 * 7 2 1 10 10 C 1.46507 * 120.00166 * 320.46124 * 9 7 2 11 11 C 1.52998 * 109.47284 * 269.99880 * 10 9 7 12 12 O 1.42901 * 109.46856 * 64.99786 * 11 10 9 13 13 C 1.42901 * 113.99749 * 179.97438 * 12 11 10 14 14 C 1.52581 * 109.23036 * 271.23863 * 13 12 11 15 15 C 1.53090 * 109.95856 * 169.00291 * 14 13 12 16 16 S 1.81744 * 108.84121 * 63.02535 * 15 14 13 17 17 C 1.81748 * 102.22184 * 306.73252 * 16 15 14 18 18 C 1.52586 * 109.22520 * 149.99998 * 13 12 11 19 19 C 1.46506 * 120.00361 * 140.45986 * 9 7 2 20 20 C 1.53006 * 117.49317 * 3.29084 * 19 9 7 21 21 C 1.52999 * 117.49701 * 294.67080 * 19 9 7 22 22 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 23 23 H 1.08996 * 109.46831 * 30.00293 * 10 9 7 24 24 H 1.08997 * 109.47005 * 149.99419 * 10 9 7 25 25 H 1.08997 * 109.46854 * 184.99827 * 11 10 9 26 26 H 1.09001 * 109.46944 * 305.00156 * 11 10 9 27 27 H 1.08999 * 109.21942 * 30.59872 * 13 12 11 28 28 H 1.09007 * 109.38694 * 289.15595 * 14 13 12 29 29 H 1.08998 * 109.38562 * 48.85151 * 14 13 12 30 30 H 1.09001 * 109.57798 * 303.21701 * 15 14 13 31 31 H 1.09002 * 109.57445 * 182.83011 * 15 14 13 32 32 H 1.08997 * 109.57727 * 293.46129 * 17 16 15 33 33 H 1.09004 * 109.57799 * 173.07261 * 17 16 15 34 34 H 1.09001 * 109.38647 * 311.14347 * 18 13 12 35 35 H 1.08997 * 109.39025 * 70.84925 * 18 13 12 36 36 H 1.09002 * 115.55343 * 148.99517 * 19 9 7 37 37 H 1.08997 * 117.49909 * 0.02562 * 20 19 9 38 38 H 1.08999 * 117.49364 * 145.01811 * 20 19 9 39 39 H 1.09002 * 117.49561 * 214.97211 * 21 19 9 40 40 H 1.08998 * 117.50120 * 359.97347 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0432 -1.2290 -0.3148 9 7 1.3854 -2.3536 0.3975 10 6 0.4634 -2.3310 1.5358 11 6 1.2383 -2.6091 2.8254 12 8 2.1614 -1.5449 3.0652 13 6 2.9396 -1.7071 4.2527 14 6 2.1931 -1.0889 5.4312 15 6 2.8698 -1.4872 6.7454 16 16 4.5555 -0.8081 6.7668 17 6 5.2394 -1.4266 5.2007 18 6 4.2959 -1.0351 4.0603 19 6 1.6387 -3.6085 -0.3150 20 6 2.6694 -3.5831 -1.4456 21 6 1.1790 -3.6991 -1.7715 22 1 -0.4850 0.8368 0.0731 23 1 -0.0101 -1.3514 1.6004 24 1 -0.3012 -3.0957 1.3993 25 1 0.5410 -2.6803 3.6601 26 1 1.7837 -3.5476 2.7263 27 1 3.0892 -2.7702 4.4412 28 1 2.2003 -0.0032 5.3348 29 1 1.1624 -1.4437 5.4328 30 1 2.9129 -2.5738 6.8194 31 1 2.3030 -1.0842 7.5847 32 1 5.3287 -2.5120 5.2445 33 1 6.2210 -0.9841 5.0307 34 1 4.7254 -1.3526 3.1101 35 1 4.1659 0.0470 4.0535 36 1 1.5766 -4.5133 0.2896 37 1 3.1592 -2.6330 -1.6589 38 1 3.2856 -4.4714 -1.5847 39 1 0.8148 -4.6636 -2.1252 40 1 0.6876 -2.8253 -2.1995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929465563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:13 Heat of formation + Delta-G solvation = -21.118232 kcal Electronic energy + Delta-G solvation = -19784.524324 eV Core-core repulsion = 16919.201708 eV Total energy + Delta-G solvation = -2865.322615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73836 -38.58193 -36.10551 -34.95023 -32.70929 -32.56248 -29.65104 -27.14611 -26.00347 -24.13227 -23.26596 -22.80885 -21.72994 -21.42722 -18.29837 -17.95241 -17.74394 -16.95509 -16.69682 -16.05779 -15.64501 -15.52210 -15.21640 -14.75216 -14.46089 -14.29470 -13.88157 -13.80755 -13.58259 -13.36545 -13.19935 -12.82854 -12.62556 -12.48712 -12.34606 -12.07900 -11.89821 -11.80541 -11.65315 -11.34461 -11.29209 -10.87708 -10.74093 -10.40285 -10.22803 -8.72937 -8.41975 -7.70818 -5.39138 0.78309 1.42024 1.46526 1.52740 1.53976 2.53790 2.84430 3.23914 3.48576 3.55105 3.70471 3.82431 3.95787 3.99730 4.19830 4.28168 4.32835 4.39817 4.46584 4.50333 4.55167 4.61937 4.69764 4.71767 4.85757 4.88641 4.93169 4.96649 5.00892 5.11057 5.18181 5.20152 5.40229 5.58708 5.72441 5.81153 6.50115 6.67575 7.24884 7.92953 8.43065 9.19437 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.005979 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.302517 B = 4682.133312 C = 5258.538229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.224 4.224 8 H 0.047 0.953 9 N -0.561 5.561 10 C 0.144 3.856 11 C 0.059 3.941 12 O -0.376 6.376 13 C 0.078 3.922 14 C -0.140 4.140 15 C -0.063 4.063 16 S -0.303 6.303 17 C -0.061 4.061 18 C -0.117 4.117 19 C 0.102 3.898 20 C -0.182 4.182 21 C -0.217 4.217 22 H 0.246 0.754 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -7.625 11.581 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.223 4.223 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.355 4.355 8 H 0.065 0.935 9 N -0.278 5.278 10 C 0.018 3.982 11 C -0.019 4.019 12 O -0.295 6.295 13 C 0.020 3.980 14 C -0.179 4.179 15 C -0.211 4.211 16 S -0.078 6.078 17 C -0.209 4.209 18 C -0.156 4.156 19 C -0.006 4.006 20 C -0.220 4.220 21 C -0.258 4.258 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.593 -6.690 12.207 15.402 hybrid contribution -0.507 0.423 -1.047 1.238 sum 6.085 -6.267 11.159 14.172 Atomic orbital electron populations 1.70140 1.06464 1.25755 1.53992 1.25577 0.95374 1.00651 1.00651 0.85648 0.79256 0.81831 0.76322 1.19542 1.22440 1.22053 1.18865 0.92256 0.85996 1.38389 0.93498 1.43426 1.50496 1.03550 1.30352 1.20917 0.90964 1.01784 0.84490 1.23205 0.91575 0.89095 0.98030 1.88230 1.53594 1.45812 1.41853 1.22074 0.91234 0.98844 0.85859 1.22175 1.00442 1.01819 0.93458 1.23400 0.93071 1.04068 1.00523 1.86879 1.16730 1.73717 1.30424 1.23390 1.01322 1.04523 0.91637 1.21688 0.93930 1.01157 0.98825 1.21557 1.01769 0.90380 0.86917 1.22991 0.91998 1.02071 1.04987 1.23252 0.97251 1.00877 1.04445 0.94474 0.91739 0.92854 0.93264 0.94069 0.91769 0.91952 0.90185 0.88246 0.86236 0.88224 0.86253 0.90748 0.92044 0.86924 0.91095 0.87204 0.88045 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 11.50 21.65 0.25 -53.91 16 2 C -0.03 -1.46 4.98 84.86 0.42 -1.04 16 3 Si 0.94 46.57 29.60 68.60 2.03 48.60 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 7 C -0.22 -12.16 7.97 84.03 0.67 -11.49 16 8 H 0.05 2.62 6.75 -2.91 -0.02 2.60 16 9 N -0.56 -27.06 2.73 -678.01 -1.85 -28.91 16 10 C 0.14 6.50 5.76 86.38 0.50 7.00 16 11 C 0.06 2.18 6.05 71.98 0.44 2.62 16 12 O -0.38 -15.12 9.44 -148.98 -1.41 -16.52 16 13 C 0.08 2.34 2.35 30.32 0.07 2.41 16 14 C -0.14 -3.65 5.35 30.49 0.16 -3.49 16 15 C -0.06 -1.27 6.45 72.01 0.46 -0.81 16 16 S -0.30 -7.09 22.33 -56.49 -1.26 -8.35 16 17 C -0.06 -1.33 6.45 72.02 0.46 -0.86 16 18 C -0.12 -3.37 5.39 30.49 0.16 -3.20 16 19 C 0.10 4.15 6.56 44.99 0.30 4.44 16 20 C -0.18 -6.90 9.80 30.60 0.30 -6.60 16 21 C -0.22 -8.60 10.36 30.60 0.32 -8.28 16 22 H 0.25 14.19 8.32 -92.71 -0.77 13.41 16 23 H 0.06 3.45 5.59 -2.39 -0.01 3.43 16 24 H 0.05 2.21 8.07 -2.39 -0.02 2.19 16 25 H 0.05 1.56 7.59 -2.39 -0.02 1.54 16 26 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 27 H 0.06 1.70 7.71 -2.39 -0.02 1.69 16 28 H 0.06 1.87 8.06 -2.38 -0.02 1.85 16 29 H 0.08 2.03 7.56 -2.39 -0.02 2.01 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 1.98 8.06 -2.39 -0.02 1.97 16 36 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 37 H 0.07 3.07 6.46 -2.39 -0.02 3.05 16 38 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -63.46 329.92 3.02 -60.44 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.99 Total: 17.94 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.27 Total: -19.29 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.60 Total: -82.82 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.41 Total: -16.52 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.26 Total: -8.35 kcal Total: -63.46 3.02 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.321 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds