Wall clock time and date at job start Mon Mar 30 2020 05:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47429 * 125.65128 * 0.02562 * 8 6 5 10 10 C 1.54913 * 104.82950 * 204.09661 * 9 8 6 11 11 C 1.55148 * 101.58145 * 322.98816 * 10 9 8 12 12 H 1.09007 * 110.72154 * 276.96195 * 11 10 9 13 13 O 1.42902 * 110.72053 * 153.86807 * 11 10 9 14 14 C 1.42899 * 114.00137 * 149.99541 * 13 11 10 15 15 C 1.50703 * 109.47220 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47462 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47413 * 119.99717 * 19 17 15 22 22 H 1.48497 * 109.47425 * 239.99667 * 19 17 15 23 23 C 1.47026 * 125.64776 * 179.71383 * 8 6 5 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.09000 * 110.36218 * 322.93187 * 9 8 6 34 34 H 1.08993 * 110.36654 * 85.14323 * 9 8 6 35 35 H 1.08999 * 111.00285 * 81.06559 * 10 9 8 36 36 H 1.09003 * 110.99864 * 204.91175 * 10 9 8 37 37 H 1.08999 * 109.47609 * 300.00840 * 14 13 11 38 38 H 1.09007 * 109.46827 * 60.00431 * 14 13 11 39 39 H 0.97004 * 119.99899 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.87895 * 298.39315 * 23 8 6 41 41 H 1.09003 * 109.88155 * 59.55077 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9159 -1.9630 -3.6040 10 6 3.5972 -1.8677 -4.9920 11 6 2.4577 -1.2685 -5.8578 12 1 1.7783 -2.0509 -6.1962 13 8 2.9930 -0.5500 -6.9710 14 6 2.1487 -0.5512 -8.1239 15 6 2.8085 0.2304 -9.2306 16 1 3.7757 0.6831 -9.0695 17 6 2.1770 0.3684 -10.4484 18 7 0.9989 -0.1825 -10.6445 19 14 2.9945 1.3378 -11.8200 20 1 4.3052 1.8529 -11.3489 21 1 3.2030 0.4537 -12.9948 22 1 2.1252 2.4779 -12.2066 23 6 1.7432 -0.3126 -4.8792 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 3.6652 -1.9564 -2.8124 34 1 2.3054 -2.8636 -3.5401 35 1 4.4569 -1.1985 -4.9601 36 1 3.8855 -2.8546 -5.3541 37 1 1.9838 -1.5773 -8.4525 38 1 1.1923 -0.0915 -7.8743 39 1 0.5548 -0.0857 -11.5014 40 1 0.6655 -0.3550 -5.0368 41 1 2.1022 0.7055 -5.0299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217357213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:32 Heat of formation + Delta-G solvation = -129.932196 kcal Electronic energy + Delta-G solvation = -21334.904577 eV Core-core repulsion = 18022.110562 eV Total energy + Delta-G solvation = -3312.794014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76758 -38.78536 -36.82229 -35.68934 -34.08134 -32.74674 -30.72668 -28.59781 -27.58120 -27.51080 -27.04382 -23.95387 -22.40840 -21.69346 -20.53830 -19.38355 -17.90395 -16.87737 -16.50820 -16.41563 -15.85306 -15.08886 -14.91647 -14.47444 -14.33681 -13.81308 -13.75042 -13.40448 -13.14243 -12.68957 -12.65192 -12.39267 -12.19836 -12.04304 -12.02308 -11.80788 -11.58833 -11.47800 -11.38029 -11.19613 -10.84815 -10.80388 -10.46090 -10.36649 -10.04274 -10.00017 -9.17321 -8.97234 -8.64302 -8.26506 -6.15501 -4.17681 2.09248 2.90544 3.27430 3.34223 3.40320 3.86383 4.30136 4.56135 4.59965 4.68845 4.70642 4.74470 4.83656 5.21532 5.27544 5.27870 5.36180 5.37206 5.44299 5.50855 5.58195 5.64508 5.70954 5.76320 5.79582 5.96708 6.01016 6.15569 6.16385 6.22143 6.22941 6.35508 6.46249 7.01404 7.33878 7.54859 7.74543 8.07549 8.39100 8.45212 8.94575 9.47451 10.95904 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.003320 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.977903 B = 8431.332403 C = 8692.461168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.139 4.139 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.568 6.568 8 N -0.599 5.599 9 C 0.106 3.894 10 C -0.131 4.131 11 C 0.080 3.920 12 H 0.074 0.926 13 O -0.376 6.376 14 C 0.192 3.808 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.104 3.896 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.264 0.736 40 H 0.071 0.929 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -4.016 21.536 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.241 4.241 4 C -0.196 4.196 5 O -0.278 6.278 6 C 0.421 3.579 7 O -0.457 6.457 8 N -0.341 5.341 9 C -0.017 4.017 10 C -0.169 4.169 11 C 0.020 3.980 12 H 0.092 0.908 13 O -0.295 6.295 14 C 0.118 3.882 15 C -0.555 4.555 16 H 0.086 0.914 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.017 4.017 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.529 -3.576 21.523 21.871 hybrid contribution -0.094 0.372 -0.759 0.850 sum 1.435 -3.205 20.764 21.059 Atomic orbital electron populations 1.22518 0.94072 1.02864 1.04615 1.22043 0.94365 0.92250 0.81512 1.22519 1.01550 0.95422 1.04618 1.21845 1.02200 1.01046 0.94538 1.86292 1.71681 1.56342 1.13530 1.17461 0.78918 0.81237 0.80289 1.90899 1.41475 1.26741 1.86578 1.47076 1.52970 1.30313 1.03777 1.22341 0.93508 0.87379 0.98462 1.22910 0.98750 1.02437 0.92807 1.22831 0.94451 0.92833 0.87858 0.90832 1.87959 1.46407 1.73244 1.21856 1.20363 0.89949 0.96488 0.81446 1.21071 1.05399 1.33088 0.95937 0.91397 1.24948 0.94964 0.95952 0.98589 1.69969 1.14504 1.44474 1.24668 0.86273 0.79510 0.79509 0.81165 1.19447 1.20813 1.20807 1.22579 1.00504 1.00610 0.78022 0.89281 0.91256 0.92242 0.91269 0.92194 0.89252 0.91541 0.91516 0.90242 0.90140 0.91147 0.89521 0.89287 0.97317 0.97360 0.92621 0.91041 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 2 C 0.14 1.49 1.13 -90.62 -0.10 1.39 16 3 C -0.18 -2.02 8.37 37.15 0.31 -1.71 16 4 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 5 O -0.36 -4.94 9.42 -40.33 -0.38 -5.32 16 6 C 0.67 10.67 7.93 54.06 0.43 11.10 16 7 O -0.57 -10.31 12.21 -19.28 -0.24 -10.55 16 8 N -0.60 -9.25 3.33 -176.29 -0.59 -9.84 16 9 C 0.11 1.29 6.92 -2.52 -0.02 1.27 16 10 C -0.13 -1.77 6.81 -24.59 -0.17 -1.94 16 11 C 0.08 1.41 3.44 -24.90 -0.09 1.32 16 12 H 0.07 1.24 7.82 -51.92 -0.41 0.83 16 13 O -0.38 -8.61 10.06 -35.23 -0.35 -8.96 16 14 C 0.19 5.06 5.53 36.01 0.20 5.26 16 15 C -0.52 -14.90 9.43 -34.44 -0.32 -15.22 16 16 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.10 1.80 6.65 -3.06 -0.02 1.78 16 24 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.24 8.11 -51.93 -0.42 -0.18 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -31.90 335.67 -6.91 -38.81 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.89 Total: -2.43 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.76 Total: 2.35 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.15 Total: -35.54 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.97 Total: -24.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.90 -6.91 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217357213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.120 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds