Wall clock time and date at job start Mon Mar 30 2020 05:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47429 * 125.65128 * 0.02562 * 8 6 5 10 10 C 1.54913 * 104.82950 * 204.09661 * 9 8 6 11 11 C 1.55148 * 101.58145 * 322.98816 * 10 9 8 12 12 H 1.09007 * 110.72154 * 276.96195 * 11 10 9 13 13 O 1.42902 * 110.72053 * 153.86807 * 11 10 9 14 14 C 1.42899 * 114.00137 * 149.99541 * 13 11 10 15 15 C 1.50703 * 109.47220 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47462 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47413 * 119.99717 * 19 17 15 22 22 H 1.48497 * 109.47425 * 239.99667 * 19 17 15 23 23 C 1.47026 * 125.64776 * 179.71383 * 8 6 5 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.09000 * 110.36218 * 322.93187 * 9 8 6 34 34 H 1.08993 * 110.36654 * 85.14323 * 9 8 6 35 35 H 1.08999 * 111.00285 * 81.06559 * 10 9 8 36 36 H 1.09003 * 110.99864 * 204.91175 * 10 9 8 37 37 H 1.08999 * 109.47609 * 300.00840 * 14 13 11 38 38 H 1.09007 * 109.46827 * 60.00431 * 14 13 11 39 39 H 0.97004 * 119.99899 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.87895 * 298.39315 * 23 8 6 41 41 H 1.09003 * 109.88155 * 59.55077 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9159 -1.9630 -3.6040 10 6 3.5972 -1.8677 -4.9920 11 6 2.4577 -1.2685 -5.8578 12 1 1.7783 -2.0509 -6.1962 13 8 2.9930 -0.5500 -6.9710 14 6 2.1487 -0.5512 -8.1239 15 6 2.8085 0.2304 -9.2306 16 1 3.7757 0.6831 -9.0695 17 6 2.1770 0.3684 -10.4484 18 7 0.9989 -0.1825 -10.6445 19 14 2.9945 1.3378 -11.8200 20 1 4.3052 1.8529 -11.3489 21 1 3.2030 0.4537 -12.9948 22 1 2.1252 2.4779 -12.2066 23 6 1.7432 -0.3126 -4.8792 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 3.6652 -1.9564 -2.8124 34 1 2.3054 -2.8636 -3.5401 35 1 4.4569 -1.1985 -4.9601 36 1 3.8855 -2.8546 -5.3541 37 1 1.9838 -1.5773 -8.4525 38 1 1.1923 -0.0915 -7.8743 39 1 0.5548 -0.0857 -11.5014 40 1 0.6655 -0.3550 -5.0368 41 1 2.1022 0.7055 -5.0299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217357213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:31 Heat of formation + Delta-G solvation = -150.520252 kcal Electronic energy + Delta-G solvation = -21335.797342 eV Core-core repulsion = 18022.110562 eV Total energy + Delta-G solvation = -3313.686779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92120 -40.08621 -38.19085 -37.16731 -35.11038 -34.81431 -32.03483 -30.02674 -29.02103 -28.37238 -28.27697 -25.30385 -24.38538 -22.77143 -21.88524 -20.46781 -19.13145 -18.54380 -18.21551 -17.58194 -17.26394 -16.55887 -16.22872 -16.05101 -15.53323 -15.16260 -15.12912 -14.72978 -14.41883 -14.05574 -13.82827 -13.34068 -13.31085 -13.22731 -13.04324 -12.90315 -12.87108 -12.86134 -12.63370 -12.55235 -12.46116 -12.27648 -12.16271 -11.60730 -11.41063 -11.28426 -11.16097 -10.92502 -10.29288 -9.88436 -8.33098 -6.45115 0.94353 1.40588 1.41604 1.56156 1.66790 2.33890 2.79205 3.01226 3.12765 3.52836 3.53945 3.75660 3.79732 3.94831 4.01987 4.24166 4.33813 4.48162 4.55166 4.60081 4.61237 4.71418 4.72733 4.76260 4.83636 4.86655 4.88814 4.97354 5.04696 5.13384 5.17184 5.19242 5.28182 5.34220 5.42682 5.55366 5.94662 6.34294 6.49418 6.78771 7.18057 7.26531 8.79122 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.003320 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.977903 B = 8431.332403 C = 8692.461168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.181 4.181 4 C -0.132 4.132 5 O -0.359 6.359 6 C 0.663 3.337 7 O -0.597 6.597 8 N -0.603 5.603 9 C 0.110 3.890 10 C -0.119 4.119 11 C 0.069 3.931 12 H 0.081 0.919 13 O -0.390 6.390 14 C 0.207 3.793 15 C -0.549 4.549 16 H 0.062 0.938 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.112 3.888 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.116 0.884 37 H -0.003 1.003 38 H -0.013 1.013 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -4.826 22.902 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 C -0.238 4.238 4 C -0.189 4.189 5 O -0.274 6.274 6 C 0.418 3.582 7 O -0.488 6.488 8 N -0.345 5.345 9 C -0.011 4.011 10 C -0.156 4.156 11 C 0.010 3.990 12 H 0.099 0.901 13 O -0.309 6.309 14 C 0.132 3.868 15 C -0.587 4.587 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.200 1.200 23 C -0.010 4.010 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.014 0.986 38 H 0.005 0.995 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.661 -4.416 22.928 23.501 hybrid contribution -0.483 0.618 -1.060 1.318 sum 2.178 -3.798 21.868 22.302 Atomic orbital electron populations 1.22479 0.94094 1.03020 1.04152 1.22506 0.94638 0.92677 0.81630 1.22484 1.01696 0.95517 1.04138 1.21870 1.02514 1.01240 0.93255 1.86309 1.71481 1.56383 1.13183 1.17614 0.78601 0.80903 0.81040 1.90895 1.42704 1.28057 1.87145 1.47106 1.53358 1.31229 1.02842 1.22553 0.93782 0.86741 0.98073 1.22917 0.96950 1.03272 0.92511 1.23150 0.96649 0.92593 0.86622 0.90090 1.87903 1.46209 1.74498 1.22263 1.19954 0.89282 0.95082 0.82449 1.21419 1.05647 1.34203 0.97407 0.91971 1.25926 0.95462 0.96658 1.01089 1.70066 1.15756 1.45278 1.25704 0.85158 0.78578 0.78100 0.77719 1.18840 1.19494 1.19963 1.22273 0.99847 0.99306 0.79606 0.92674 0.88743 0.91728 0.88713 0.91869 0.92719 0.90935 0.91033 0.87747 0.87912 0.88815 0.90124 0.86571 0.98566 0.99549 0.92027 0.91945 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 8.37 71.98 0.60 -3.10 16 2 C 0.12 2.48 1.13 -10.79 -0.01 2.47 16 3 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 4 C -0.13 -1.63 8.85 71.98 0.64 -0.99 16 5 O -0.36 -9.33 9.42 -55.53 -0.52 -9.85 16 6 C 0.66 21.34 7.93 129.79 1.03 22.37 16 7 O -0.60 -22.59 12.21 19.82 0.24 -22.35 16 8 N -0.60 -18.50 3.33 -942.06 -3.13 -21.63 16 9 C 0.11 2.43 6.92 86.86 0.60 3.03 16 10 C -0.12 -3.02 6.81 31.98 0.22 -2.80 16 11 C 0.07 2.44 3.44 31.78 0.11 2.55 16 12 H 0.08 2.74 7.82 -2.38 -0.02 2.73 16 13 O -0.39 -18.36 10.06 -148.98 -1.50 -19.86 16 14 C 0.21 11.35 5.53 71.24 0.39 11.74 16 15 C -0.55 -32.36 9.43 25.60 0.24 -32.11 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 19 Si 0.98 44.24 29.54 68.60 2.03 46.26 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.11 4.04 6.65 86.73 0.58 4.61 16 24 H 0.05 1.54 5.88 -2.39 -0.01 1.52 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.56 5.88 -2.39 -0.01 1.54 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.89 8.04 -2.39 -0.02 1.87 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.00 -0.19 8.11 -2.39 -0.02 -0.21 16 38 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 Total: -1.00 -71.05 335.67 3.85 -67.20 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.99 Total: 9.87 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.46 Total: 5.45 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.85 Total: -76.72 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -1.78 Total: -52.06 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.05 3.85 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217357213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.321 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds